; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0036548 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036548
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr3:48303932..48304366
RNA-Seq ExpressionLag0036548
SyntenyLag0036548
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_021732105.1 uncharacterized protein LOC110698909 [Chenopodium quinoa]3.1e-3752.55Show/hide
Query:  ILDSIPTCITEAHNNMLLRDFTREDIYAVLKSMHPSNAPGPDEIQAIFYQKYWDIVGESVCDFCLDFLNGNESLDQVNQTYITLIPKIKDPSNMKDFRPI
        ++  +PT +++A N MLLR ++RE+++  LK MHPS APGPD + AIFYQ++W IVG  V DF +  LNGN  L+++N+T I L+ K+K+P +  DFRPI
Subjt:  ILDSIPTCITEAHNNMLLRDFTREDIYAVLKSMHPSNAPGPDEIQAIFYQKYWDIVGESVCDFCLDFLNGNESLDQVNQTYITLIPKIKDPSNMKDFRPI

Query:  SLCSVLYKITAKALAIRLRTVLDRIISPSQSAFVPGR
        SLC+V+YK+  K + +RL+ VL  IIS +QSAFVPGR
Subjt:  SLCSVLYKITAKALAIRLRTVLDRIISPSQSAFVPGR

XP_021736509.1 uncharacterized protein LOC110703057 [Chenopodium quinoa]3.2e-3448.59Show/hide
Query:  ESIATILDSIPTCITEAHNNMLLRDFTREDIYAVLKSMHPSNAPGPDEIQAIFYQKYWDIVGESVCDFCLDFLNGNESLDQVNQTYITLIPKIKDPSNMK
        E    +L  +   I +++N  LLR +T+E++Y  LK MHP  APGPD + AIFYQK+W IVG+ V  F  + L G   L+ VN+T I+LIPK+K P++M 
Subjt:  ESIATILDSIPTCITEAHNNMLLRDFTREDIYAVLKSMHPSNAPGPDEIQAIFYQKYWDIVGESVCDFCLDFLNGNESLDQVNQTYITLIPKIKDPSNMK

Query:  DFRPISLCSVLYKITAKALAIRLRTVLDRIISPSQSAFVPGR
        +FRPISLC+VLYK+ +K + +RL+++L  +++ +QSAFVPGR
Subjt:  DFRPISLCSVLYKITAKALAIRLRTVLDRIISPSQSAFVPGR

XP_021737341.1 uncharacterized protein LOC110703870 [Chenopodium quinoa]1.1e-3450Show/hide
Query:  ESIATILDSIPTCITEAHNNMLLRDFTREDIYAVLKSMHPSNAPGPDEIQAIFYQKYWDIVGESVCDFCLDFLNGNESLDQVNQTYITLIPKIKDPSNMK
        E  A +L+S+   I+E HN+ LL+ F++++I+A + S HP  APGPD I AIFYQK+W IVG+ V +   + L+G  S  Q+N+T I LIPK+  P++M 
Subjt:  ESIATILDSIPTCITEAHNNMLLRDFTREDIYAVLKSMHPSNAPGPDEIQAIFYQKYWDIVGESVCDFCLDFLNGNESLDQVNQTYITLIPKIKDPSNMK

Query:  DFRPISLCSVLYKITAKALAIRLRTVLDRIISPSQSAFVPGR
        +FRPI+LC+V+YKI +KA+ +RL+ +L  +IS +QSAFVPGR
Subjt:  DFRPISLCSVLYKITAKALAIRLRTVLDRIISPSQSAFVPGR

XP_023881891.1 uncharacterized protein LOC111994244 [Quercus suber]3.7e-3855Show/hide
Query:  IATILDSIPTCITEAHNNMLLRDFTREDIYAVLKSMHPSNAPGPDEIQAIFYQKYWDIVGESVCDFCLDFLNGNESLDQVNQTYITLIPKIKDPSNMKDF
        I+ +LD+IPT +TE  N+ L+++FTRE+I   L  MHP+ APGPD + AIF+QKYW+IVG  +    LD LN N S+ ++N+T ITL+PKIK+P+ M DF
Subjt:  IATILDSIPTCITEAHNNMLLRDFTREDIYAVLKSMHPSNAPGPDEIQAIFYQKYWDIVGESVCDFCLDFLNGNESLDQVNQTYITLIPKIKDPSNMKDF

Query:  RPISLCSVLYKITAKALAIRLRTVLDRIISPSQSAFVPGR
        RPISLC+V+YK+ +K LA RL+ +L +IIS +QSAF+ GR
Subjt:  RPISLCSVLYKITAKALAIRLRTVLDRIISPSQSAFVPGR

XP_023891716.1 uncharacterized protein LOC112003738 [Quercus suber]2.5e-3452.86Show/hide
Query:  IATILDSIPTCITEAHNNMLLRDFTREDIYAVLKSMHPSNAPGPDEIQAIFYQKYWDIVGESVCDFCLDFLNGNESLDQVNQTYITLIPKIKDPSNMKDF
        I  ++++IPT +TE  N  L RD TRE++   LK +HP+ APGPD + AIFYQKYW IVG SV +  L+ LN N  + ++N+T I+LIPK   P  M DF
Subjt:  IATILDSIPTCITEAHNNMLLRDFTREDIYAVLKSMHPSNAPGPDEIQAIFYQKYWDIVGESVCDFCLDFLNGNESLDQVNQTYITLIPKIKDPSNMKDF

Query:  RPISLCSVLYKITAKALAIRLRTVLDRIISPSQSAFVPGR
        RPISLC+V+YK+ +K LA RL+ +L  IIS +QSAF P R
Subjt:  RPISLCSVLYKITAKALAIRLRTVLDRIISPSQSAFVPGR

TrEMBL top hitse value%identityAlignment
A0A2N9FNH6 Reverse transcriptase domain-containing protein1.8e-3555.32Show/hide
Query:  SIATILDSIPTCITEAHNNMLLRDFTREDIYAVLKSMHPSNAPGPDEIQAIFYQKYWDIVGESVCDFCLDFLNGNESLDQVNQTYITLIPKIKDPSNMKD
        +IA ++ S+   +T+  N++LL  FT E+I + L  MHP+ APGPD + A+FYQK+W IVG+ V +  L+FL+  + L  VN T+ITLIPKI  P  M  
Subjt:  SIATILDSIPTCITEAHNNMLLRDFTREDIYAVLKSMHPSNAPGPDEIQAIFYQKYWDIVGESVCDFCLDFLNGNESLDQVNQTYITLIPKIKDPSNMKD

Query:  FRPISLCSVLYKITAKALAIRLRTVLDRIISPSQSAFVPGR
        FRPISLC+VLYKI +K LA RL+TVLD IIS +QSAFVPGR
Subjt:  FRPISLCSVLYKITAKALAIRLRTVLDRIISPSQSAFVPGR

A0A2N9GPZ7 Reverse transcriptase domain-containing protein5.4e-3552.11Show/hide
Query:  ESIATILDSIPTCITEAHNNMLLRDFTREDIYAVLKSMHPSNAPGPDEIQAIFYQKYWDIVGESVCDFCLDFLNGNESLDQVNQTYITLIPKIKDPSNMK
        ESI T+L  + + +T A N+ L  +FT++++   LK M+P+ APGPD + AIFYQ YWDIVG  V    L  L+    L ++N T+I LIPK+K+P N+ 
Subjt:  ESIATILDSIPTCITEAHNNMLLRDFTREDIYAVLKSMHPSNAPGPDEIQAIFYQKYWDIVGESVCDFCLDFLNGNESLDQVNQTYITLIPKIKDPSNMK

Query:  DFRPISLCSVLYKITAKALAIRLRTVLDRIISPSQSAFVPGR
        DFRPISLC+V+YKI +K LA RL+ VL  +IS +QSAFVPGR
Subjt:  DFRPISLCSVLYKITAKALAIRLRTVLDRIISPSQSAFVPGR

A0A2N9I335 Reverse transcriptase domain-containing protein1.8e-3552.82Show/hide
Query:  ESIATILDSIPTCITEAHNNMLLRDFTREDIYAVLKSMHPSNAPGPDEIQAIFYQKYWDIVGESVCDFCLDFLNGNESLDQVNQTYITLIPKIKDPSNMK
        E+I + LD +   +TE  NNMLL DF  E++   LK M+P+ APGPD + A+FYQ YWDIVG  V    L  L+    ++++N T+I LIPK+K+P  + 
Subjt:  ESIATILDSIPTCITEAHNNMLLRDFTREDIYAVLKSMHPSNAPGPDEIQAIFYQKYWDIVGESVCDFCLDFLNGNESLDQVNQTYITLIPKIKDPSNMK

Query:  DFRPISLCSVLYKITAKALAIRLRTVLDRIISPSQSAFVPGR
        DFRPISLC+V+YKI +K LA RL+ VL  +IS SQSAFVPGR
Subjt:  DFRPISLCSVLYKITAKALAIRLRTVLDRIISPSQSAFVPGR

A0A2N9IPS8 Reverse transcriptase domain-containing protein5.4e-3552.11Show/hide
Query:  ESIATILDSIPTCITEAHNNMLLRDFTREDIYAVLKSMHPSNAPGPDEIQAIFYQKYWDIVGESVCDFCLDFLNGNESLDQVNQTYITLIPKIKDPSNMK
        ESI T+L  + + +T A N+ L  +FT++++   LK M+P+ APGPD + AIFYQ YWDIVG  V    L  L+    L ++N T+I LIPK+K+P N+ 
Subjt:  ESIATILDSIPTCITEAHNNMLLRDFTREDIYAVLKSMHPSNAPGPDEIQAIFYQKYWDIVGESVCDFCLDFLNGNESLDQVNQTYITLIPKIKDPSNMK

Query:  DFRPISLCSVLYKITAKALAIRLRTVLDRIISPSQSAFVPGR
        DFRPISLC+V+YKI +K LA RL+ VL  +IS +QSAFVPGR
Subjt:  DFRPISLCSVLYKITAKALAIRLRTVLDRIISPSQSAFVPGR

A0A2N9J3U0 Reverse transcriptase domain-containing protein1.8e-3555.32Show/hide
Query:  SIATILDSIPTCITEAHNNMLLRDFTREDIYAVLKSMHPSNAPGPDEIQAIFYQKYWDIVGESVCDFCLDFLNGNESLDQVNQTYITLIPKIKDPSNMKD
        +IA ++ S+   +T+  N++LL  FT E+I + L  MHP+ APGPD + A+FYQK+W IVG+ V +  L+FL+  + L  VN T+ITLIPKI  P  M  
Subjt:  SIATILDSIPTCITEAHNNMLLRDFTREDIYAVLKSMHPSNAPGPDEIQAIFYQKYWDIVGESVCDFCLDFLNGNESLDQVNQTYITLIPKIKDPSNMKD

Query:  FRPISLCSVLYKITAKALAIRLRTVLDRIISPSQSAFVPGR
        FRPISLC+VLYKI +K LA RL+TVLD IIS +QSAFVPGR
Subjt:  FRPISLCSVLYKITAKALAIRLRTVLDRIISPSQSAFVPGR

SwissProt top hitse value%identityAlignment
P08548 LINE-1 reverse transcriptase homolog1.7e-0930.37Show/hide
Query:  ITEAHNNMLLRDFTREDIYAVLKSMHPSNAPGPDEIQAIFYQKYWDIVGESVCDFCLDFLNGNESLDQVNQTY----ITLIPKI-KDPSNMKDFRPISLC
        +++    ML R  +  +I + ++++    +PGPD   + FYQ +     E +    L+     E    +  T+    ITLIPK  KDP+  +++RPISL 
Subjt:  ITEAHNNMLLRDFTREDIYAVLKSMHPSNAPGPDEIQAIFYQKYWDIVGESVCDFCLDFLNGNESLDQVNQTY----ITLIPKI-KDPSNMKDFRPISLC

Query:  SVLYKITAKALAIRLRTVLDRIISPSQSAFVPGRQ
        ++  KI  K L  R++  + +II   Q  F+PG Q
Subjt:  SVLYKITAKALAIRLRTVLDRIISPSQSAFVPGRQ

P11369 LINE-1 retrotransposable element ORF2 protein4.4e-1035.34Show/hide
Query:  EDIYAVLKSMHPSNAPGPDEIQAIFYQKYWDIVGESVCDFCLDFLNGNESLDQVNQTYITLIPK-IKDPSNMKDFRPISLCSVLYKITAKALAIRLRTVL
        ++I AV+ S+    +PGPD   A FYQ + + +   +              +   +  ITLIPK  KDP+ +++FRPISL ++  KI  K LA R++  +
Subjt:  EDIYAVLKSMHPSNAPGPDEIQAIFYQKYWDIVGESVCDFCLDFLNGNESLDQVNQTYITLIPK-IKDPSNMKDFRPISLCSVLYKITAKALAIRLRTVL

Query:  DRIISPSQSAFVPGRQ
          II P Q  F+PG Q
Subjt:  DRIISPSQSAFVPGRQ

P14381 Transposon TX1 uncharacterized 149 kDa protein2.3e-1432.59Show/hide
Query:  DSIPTCITEAHNNMLLRDFTREDIYAVLKSMHPSNAPGPDEIQAIFYQKYWDIVGESVCDFCLDFLNGNESLDQVNQTYITLIPKIKDPSNMKDFRPISL
        D +P  ++E     L    T +++   L+ M  + +PG D +   F+Q +WD +G        +     E      +  ++L+PK  D   +K++RP+SL
Subjt:  DSIPTCITEAHNNMLLRDFTREDIYAVLKSMHPSNAPGPDEIQAIFYQKYWDIVGESVCDFCLDFLNGNESLDQVNQTYITLIPKIKDPSNMKDFRPISL

Query:  CSVLYKITAKALAIRLRTVLDRIISPSQSAFVPGR
         S  YKI AKA+++RL++VL  +I P QS  VPGR
Subjt:  CSVLYKITAKALAIRLRTVLDRIISPSQSAFVPGR

Arabidopsis top hitse value%identityAlignment
AT1G43760.1 DNAse I-like superfamily protein2.4e-1137.21Show/hide
Query:  EDIYAVLKSMHPSNAPGPDEIQAIFYQKYWDIVGESVCDFCLDFLNGNESLDQVNQTYITLIPKIKDPSNMKDFRPISLCSVLYKI
        ++I A + +M  + APGPD   A F+ + W +V +S      +F      L + N T ITLIPK+     +  FRP+S C+V+YKI
Subjt:  EDIYAVLKSMHPSNAPGPDEIQAIFYQKYWDIVGESVCDFCLDFLNGNESLDQVNQTYITLIPKIKDPSNMKDFRPISLCSVLYKI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTCAATTGCAACCATTTTGGATTCTATCCCAACTTGCATCACAGAGGCTCATAATAACATGTTGCTAAGAGATTTTACTCGTGAAGATATTTATGCGGTGTTAAA
AAGCATGCATCCTTCCAATGCTCCAGGCCCCGATGAGATTCAAGCAATCTTTTATCAGAAATACTGGGATATTGTGGGGGAGAGTGTCTGTGATTTTTGCTTAGATTTCC
TTAATGGTAATGAATCTTTAGATCAGGTGAATCAAACTTACATAACTTTAATTCCAAAGATCAAAGACCCTAGCAATATGAAAGACTTCAGGCCCATAAGTTTGTGTTCT
GTCCTTTACAAAATTACTGCCAAAGCTCTAGCCATTAGATTAAGAACTGTGCTTGATAGAATCATATCTCCTAGTCAATCAGCTTTTGTTCCGGGAAGACAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGTCAATTGCAACCATTTTGGATTCTATCCCAACTTGCATCACAGAGGCTCATAATAACATGTTGCTAAGAGATTTTACTCGTGAAGATATTTATGCGGTGTTAAA
AAGCATGCATCCTTCCAATGCTCCAGGCCCCGATGAGATTCAAGCAATCTTTTATCAGAAATACTGGGATATTGTGGGGGAGAGTGTCTGTGATTTTTGCTTAGATTTCC
TTAATGGTAATGAATCTTTAGATCAGGTGAATCAAACTTACATAACTTTAATTCCAAAGATCAAAGACCCTAGCAATATGAAAGACTTCAGGCCCATAAGTTTGTGTTCT
GTCCTTTACAAAATTACTGCCAAAGCTCTAGCCATTAGATTAAGAACTGTGCTTGATAGAATCATATCTCCTAGTCAATCAGCTTTTGTTCCGGGAAGACAATGA
Protein sequenceShow/hide protein sequence
MESIATILDSIPTCITEAHNNMLLRDFTREDIYAVLKSMHPSNAPGPDEIQAIFYQKYWDIVGESVCDFCLDFLNGNESLDQVNQTYITLIPKIKDPSNMKDFRPISLCS
VLYKITAKALAIRLRTVLDRIISPSQSAFVPGRQ