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Lag0036549 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036549
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr3:48304617..48305346
RNA-Seq ExpressionLag0036549
SyntenyLag0036549
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RHN78164.1 putative RNA-directed DNA polymerase [Medicago truncatula]1.4e-0740Show/hide
Query:  SFMYAQQSRKDEEIYRSIKKLLLSYEMASGQTINFEKSSFMASPNTKLPQVDKIKELLGVQHKESFGQYLGLPSQMGRSKKEVLT
        SF++ Q +  + +   ++K++LL YE ASGQ IN+ KS+   S NT+   +  I  +LGV      G+YLGLPS +GR+KK + +
Subjt:  SFMYAQQSRKDEEIYRSIKKLLLSYEMASGQTINFEKSSFMASPNTKLPQVDKIKELLGVQHKESFGQYLGLPSQMGRSKKEVLT

XP_012087680.1 uncharacterized protein LOC105646435 [Jatropha curcas]6.5e-1043.64Show/hide
Query:  IGSFMYAQQSRKDEEIYRSIKKLLLSYEMASGQTINFEKSSFMASPNTKLPQVDKIKELLGVQHKESFGQYLGLPSQMGRSKKEVL--TTSRIAFRKL--
        IG  +  +  R ++   R++K +LL+YE ASGQ I+ +KSS   S NT   + D I   LGV+ K+S G YLGLPS +GR K+EV      RI +RK+  
Subjt:  IGSFMYAQQSRKDEEIYRSIKKLLLSYEMASGQTINFEKSSFMASPNTKLPQVDKIKELLGVQHKESFGQYLGLPSQMGRSKKEVL--TTSRIAFRKL--

Query:  YKDGKGSSGG
        +KDG  S  G
Subjt:  YKDGKGSSGG

XP_019159987.1 PREDICTED: uncharacterized protein LOC109156589 [Ipomoea nil]3.6e-0850Show/hide
Query:  IKKLLLSYEMASGQTINFEKSSFMASPNTKLPQVDKIKELLGVQHKESFGQYLGLPSQMGRSKKEV
        IK+ L+ YE  SGQ +N+ KSS   S NT++PQ +++   LGV+   SFG+YLGLPS +GR+K+ V
Subjt:  IKKLLLSYEMASGQTINFEKSSFMASPNTKLPQVDKIKELLGVQHKESFGQYLGLPSQMGRSKKEV

XP_019199805.1 PREDICTED: uncharacterized protein LOC109193404 [Ipomoea nil]3.6e-0845.21Show/hide
Query:  RKDEEIYRSIKKLLLSYEMASGQTINFEKSSFMASPNTKLPQVDKIKELLGVQHKESFGQYLGLPSQMGRSKK
        + +EE    +KK L  YE  SGQ +N+ KS+   S NT++   D + ++LGV    +FG+YLGLPS MGR+KK
Subjt:  RKDEEIYRSIKKLLLSYEMASGQTINFEKSSFMASPNTKLPQVDKIKELLGVQHKESFGQYLGLPSQMGRSKK

XP_022157437.1 uncharacterized protein LOC111024135 [Momordica charantia]6.5e-1050.54Show/hide
Query:  RSIKKLLLSYEMA-SGQTINFEKSSFMASPNTKLPQVDKIKELLGVQHKESFGQYLGLPSQMGRSKKEVLTTSRIAFRKLYKDGKG---SSGG
        RSIK +L SYE A SGQ IN +KS F+ S NTK   V  I++ L V H ES GQYLGLPSQ GR+K++V    +    K  +  KG   S GG
Subjt:  RSIKKLLLSYEMA-SGQTINFEKSSFMASPNTKLPQVDKIKELLGVQHKESFGQYLGLPSQMGRSKKEVLTTSRIAFRKLYKDGKG---SSGG

TrEMBL top hitse value%identityAlignment
A0A1U8J230 uncharacterized protein LOC1079027814.5e-0948.05Show/hide
Query:  IKKLLLSYEMASGQTINFEKSSFMASPNTKLPQVDKIKELLGVQHKESFGQYLGLPSQMGRSKKEVLTTSRIAFRKL
        IK++L +YE ASGQ INF KS  M S NTKLP    +  +LGV      G+YLGLPS +GR+KK++ +  R   R++
Subjt:  IKKLLLSYEMASGQTINFEKSSFMASPNTKLPQVDKIKELLGVQHKESFGQYLGLPSQMGRSKKEVLTTSRIAFRKL

A0A2N9EK17 Reverse transcriptase domain-containing protein5.0e-0832.2Show/hide
Query:  MGPFILVLVLNLCIGSFMYAQQSRK---DEEIYRSIKKLLLSYEMASGQTINFEKSSFMASPNTKLPQVDKIKELLGVQHKESFGQYLGLPSQMGRSKKE
        + P++ ++        F  A++ R+    +    ++K++L +YEMASGQ +NFEKS+F  S NT     + I  +LG     +FG+YLGLP  +GR K++
Subjt:  MGPFILVLVLNLCIGSFMYAQQSRK---DEEIYRSIKKLLLSYEMASGQTINFEKSSFMASPNTKLPQVDKIKELLGVQHKESFGQYLGLPSQMGRSKKE

Query:  VLTTSRIAFRKLYKDGKG
            ++    K  +  KG
Subjt:  VLTTSRIAFRKLYKDGKG

A0A2Z6MQE8 CCHC-type domain-containing protein8.6e-0836.05Show/hide
Query:  RSIKKLLLSYEMASGQTINFEKSSFMASPNTKLPQVDKIKELLGVQHKESFGQYLGLPSQMGRSKKEVLT--TSRI-------AFRKLYKDGKG-SSGGV
        R I ++L +YE ASGQ IN  KS    S N  L   + + EL+GV H    G  LG+PS +GRSKK        RI         R L K GK      V
Subjt:  RSIKKLLLSYEMASGQTINFEKSSFMASPNTKLPQVDKIKELLGVQHKESFGQYLGLPSQMGRSKKEVLT--TSRI-------AFRKLYKDGKG-SSGGV

Query:  LQTHEGKYIGAVGKSSVYISIRGFGLSRLTNLQSSYVVKAKLEDRSQ
        LQ      +  +GK S+    R FG SRL + Q  Y  + ++E+  +
Subjt:  LQTHEGKYIGAVGKSSVYISIRGFGLSRLTNLQSSYVVKAKLEDRSQ

A0A396JLU7 Putative RNA-directed DNA polymerase6.6e-0840Show/hide
Query:  SFMYAQQSRKDEEIYRSIKKLLLSYEMASGQTINFEKSSFMASPNTKLPQVDKIKELLGVQHKESFGQYLGLPSQMGRSKKEVLT
        SF++ Q +  + +   ++K++LL YE ASGQ IN+ KS+   S NT+   +  I  +LGV      G+YLGLPS +GR+KK + +
Subjt:  SFMYAQQSRKDEEIYRSIKKLLLSYEMASGQTINFEKSSFMASPNTKLPQVDKIKELLGVQHKESFGQYLGLPSQMGRSKKEVLT

A0A6J1DUG8 uncharacterized protein LOC1110241353.1e-1050.54Show/hide
Query:  RSIKKLLLSYEMA-SGQTINFEKSSFMASPNTKLPQVDKIKELLGVQHKESFGQYLGLPSQMGRSKKEVLTTSRIAFRKLYKDGKG---SSGG
        RSIK +L SYE A SGQ IN +KS F+ S NTK   V  I++ L V H ES GQYLGLPSQ GR+K++V    +    K  +  KG   S GG
Subjt:  RSIKKLLLSYEMA-SGQTINFEKSSFMASPNTKLPQVDKIKELLGVQHKESFGQYLGLPSQMGRSKKEVLTTSRIAFRKLYKDGKG---SSGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGACCCTTTATCCTCGTACTTGTTCTTAATTTGTGCATAGGGTCTTTCATGTATGCTCAACAAAGCAGAAAGGATGAGGAAATTTACAGGTCTATTAAAAAGCTTCT
TCTCAGTTATGAAATGGCTTCAGGGCAAACCATTAATTTTGAGAAGTCTTCTTTTATGGCAAGCCCAAACACAAAGCTTCCTCAAGTTGACAAAATCAAGGAGCTCCTGG
GGGTCCAACATAAGGAGAGCTTTGGTCAATATCTAGGCTTGCCGTCTCAAATGGGTAGGAGCAAGAAGGAAGTTTTGACAACATCAAGGATCGCGTTTAGGAAGCTTTAC
AAGGATGGAAAGGGAAGTTCTGGTGGGGTGCTACAGACACATGAAGGAAAATACATTGGCGCAGTTGGAAAAAGCTCTGTCTACATAAGCATCAGGGGGTTTGGGCTTTC
GAGACTTACAAATCTTCAATCGAGCTATGTTGTCAAAGCAAAGTTGGAGGATCGTTCACAACCCGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGACCCTTTATCCTCGTACTTGTTCTTAATTTGTGCATAGGGTCTTTCATGTATGCTCAACAAAGCAGAAAGGATGAGGAAATTTACAGGTCTATTAAAAAGCTTCT
TCTCAGTTATGAAATGGCTTCAGGGCAAACCATTAATTTTGAGAAGTCTTCTTTTATGGCAAGCCCAAACACAAAGCTTCCTCAAGTTGACAAAATCAAGGAGCTCCTGG
GGGTCCAACATAAGGAGAGCTTTGGTCAATATCTAGGCTTGCCGTCTCAAATGGGTAGGAGCAAGAAGGAAGTTTTGACAACATCAAGGATCGCGTTTAGGAAGCTTTAC
AAGGATGGAAAGGGAAGTTCTGGTGGGGTGCTACAGACACATGAAGGAAAATACATTGGCGCAGTTGGAAAAAGCTCTGTCTACATAAGCATCAGGGGGTTTGGGCTTTC
GAGACTTACAAATCTTCAATCGAGCTATGTTGTCAAAGCAAAGTTGGAGGATCGTTCACAACCCGAATAG
Protein sequenceShow/hide protein sequence
MGPFILVLVLNLCIGSFMYAQQSRKDEEIYRSIKKLLLSYEMASGQTINFEKSSFMASPNTKLPQVDKIKELLGVQHKESFGQYLGLPSQMGRSKKEVLTTSRIAFRKLY
KDGKGSSGGVLQTHEGKYIGAVGKSSVYISIRGFGLSRLTNLQSSYVVKAKLEDRSQPE