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Lag0036550 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036550
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr3:48310709..48312033
RNA-Seq ExpressionLag0036550
SyntenyLag0036550
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065966.1 hypothetical protein E6C27_scaffold62G00430 [Cucumis melo var. makuwa]2.3e-0860Show/hide
Query:  MSMTATEEENQCSVSTSTRPSAFQRLSVSTSKKSQSSTSIFDRLKVTSDQPRRKIDNLDVKLFNE
        +SM   EEENQC  ST TR SAF+RLS+STSKK + STS FDR K+T++Q +R+I +L  KLF+E
Subjt:  MSMTATEEENQCSVSTSTRPSAFQRLSVSTSKKSQSSTSIFDRLKVTSDQPRRKIDNLDVKLFNE
TYK02147.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.1e-0860Show/hide
Query:  MSMTATEEENQCSVSTSTRPSAFQRLSVSTSKKSQSSTSIFDRLKVTSDQPRRKIDNLDVKLFNE
        +SM   EEENQC  S STR  AF+RLS+STSKK + STS FDRLK+T+DQ +R++  L  KLF E
Subjt:  MSMTATEEENQCSVSTSTRPSAFQRLSVSTSKKSQSSTSIFDRLKVTSDQPRRKIDNLDVKLFNE
TYK23553.1 hypothetical protein E5676_scaffold500G00600 [Cucumis melo var. makuwa]1.8e-0860Show/hide
Query:  MSMTATEEENQCSVSTSTRPSAFQRLSVSTSKKSQSSTSIFDRLKVTSDQPRRKIDNLDVKLFNE
        +SMT  EEENQC  ST  R SAF+RLS+STSKK + STS FDRLK+T+DQ +R++ +L  K F+E
Subjt:  MSMTATEEENQCSVSTSTRPSAFQRLSVSTSKKSQSSTSIFDRLKVTSDQPRRKIDNLDVKLFNE
TYK27425.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.1e-0858.46Show/hide
Query:  MSMTATEEENQCSVSTSTRPSAFQRLSVSTSKKSQSSTSIFDRLKVTSDQPRRKIDNLDVKLFNE
        +SM   EEENQC  S STR SAF+RLS+STSKK + STS+F+RLK+T+DQ +R+  +L  K F+E
Subjt:  MSMTATEEENQCSVSTSTRPSAFQRLSVSTSKKSQSSTSIFDRLKVTSDQPRRKIDNLDVKLFNE
TYK30263.1 gag protease polyprotein [Cucumis melo var. makuwa]2.3e-0860Show/hide
Query:  MSMTATEEENQCSVSTSTRPSAFQRLSVSTSKKSQSSTSIFDRLKVTSDQPRRKIDNLDVKLFNE
        +SM   EEENQC  ST TR SAF+RLS+STSKK + STS FDR K+T++Q +R+I +L  KLF+E
Subjt:  MSMTATEEENQCSVSTSTRPSAFQRLSVSTSKKSQSSTSIFDRLKVTSDQPRRKIDNLDVKLFNE
TrEMBL top hitse value%identityAlignment
A0A5A7V4E9 Retrotransposon gag protein2.5e-0858.46Show/hide
Query:  MSMTATEEENQCSVSTSTRPSAFQRLSVSTSKKSQSSTSIFDRLKVTSDQPRRKIDNLDVKLFNE
        +SM   EEENQC  S STR SAF+RLS+STSKK + STS+F+RLK+T+DQ +R+  +L  K F+E
Subjt:  MSMTATEEENQCSVSTSTRPSAFQRLSVSTSKKSQSSTSIFDRLKVTSDQPRRKIDNLDVKLFNE
A0A5A7VHY3 Uncharacterized protein1.1e-0860Show/hide
Query:  MSMTATEEENQCSVSTSTRPSAFQRLSVSTSKKSQSSTSIFDRLKVTSDQPRRKIDNLDVKLFNE
        +SM   EEENQC  ST TR SAF+RLS+STSKK + STS FDR K+T++Q +R+I +L  KLF+E
Subjt:  MSMTATEEENQCSVSTSTRPSAFQRLSVSTSKKSQSSTSIFDRLKVTSDQPRRKIDNLDVKLFNE
A0A5D3DIY2 Uncharacterized protein8.5e-0960Show/hide
Query:  MSMTATEEENQCSVSTSTRPSAFQRLSVSTSKKSQSSTSIFDRLKVTSDQPRRKIDNLDVKLFNE
        +SMT  EEENQC  ST  R SAF+RLS+STSKK + STS FDRLK+T+DQ +R++ +L  K F+E
Subjt:  MSMTATEEENQCSVSTSTRPSAFQRLSVSTSKKSQSSTSIFDRLKVTSDQPRRKIDNLDVKLFNE
A0A5D3DVW2 Retrotransposon gag protein2.5e-0858.46Show/hide
Query:  MSMTATEEENQCSVSTSTRPSAFQRLSVSTSKKSQSSTSIFDRLKVTSDQPRRKIDNLDVKLFNE
        +SM   EEENQC  S STR SAF+RLS+STSKK + STS+F+RLK+T+DQ +R+  +L  K F+E
Subjt:  MSMTATEEENQCSVSTSTRPSAFQRLSVSTSKKSQSSTSIFDRLKVTSDQPRRKIDNLDVKLFNE
A0A5D3E2D7 Gag protease polyprotein1.1e-0860Show/hide
Query:  MSMTATEEENQCSVSTSTRPSAFQRLSVSTSKKSQSSTSIFDRLKVTSDQPRRKIDNLDVKLFNE
        +SM   EEENQC  ST TR SAF+RLS+STSKK + STS FDR K+T++Q +R+I +L  KLF+E
Subjt:  MSMTATEEENQCSVSTSTRPSAFQRLSVSTSKKSQSSTSIFDRLKVTSDQPRRKIDNLDVKLFNE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGACCGCGACAGAAGAAGAAAATCAATGTTCGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGACTAAGTGTCTCCACATCGAAGAAAAGTCAATCTTC
AACATCTATCTTTGATCGCCTCAAAGTAACAAGCGATCAACCTCGAAGAAAGATAGATAACTTAGATGTGAAATTGTTCAATGAAGTAGCAGTAACAAAAAGCTTCATAG
TAGCATCCCGTCACTTCTTTCTCTCAAGCTTGAAGGTTCTCACGCGCTTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATACGCTGCAGTTCCTTCC
TCCAAGTCAGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTATTGTTTCTTCCTCCAAGTTCGAAAGTTCTCACGCG
CTTCGCTGCAGTTCCTTCCTCCAAGTACGAAGGTTCTCACGCGTTTTCGCTGCAGTTCCTTCCTCCAAGTCCGAAGGGGTTCTCACGCGCTTTCGTTGCAGATCCTTCCT
CCAAGTTCAAAGGTTCTCACGCACTTAGTTCCTTCCTCCAAGTTCTTTCAAGTTCAAAGGTTCTCACGCGCTTCGTTGTTCCAGTTCCTTCCCCACAAGTTGTTCTCACG
CGCTTCGCTACTTCCTCCAAAATTCGGAGGTTCTCATCCAAATTTGAAGGGTTCTCACGCGCTGCGCTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGACCGCGACAGAAGAAGAAAATCAATGTTCGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGACTAAGTGTCTCCACATCGAAGAAAAGTCAATCTTC
AACATCTATCTTTGATCGCCTCAAAGTAACAAGCGATCAACCTCGAAGAAAGATAGATAACTTAGATGTGAAATTGTTCAATGAAGTAGCAGTAACAAAAAGCTTCATAG
TAGCATCCCGTCACTTCTTTCTCTCAAGCTTGAAGGTTCTCACGCGCTTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATACGCTGCAGTTCCTTCC
TCCAAGTCAGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTATTGTTTCTTCCTCCAAGTTCGAAAGTTCTCACGCG
CTTCGCTGCAGTTCCTTCCTCCAAGTACGAAGGTTCTCACGCGTTTTCGCTGCAGTTCCTTCCTCCAAGTCCGAAGGGGTTCTCACGCGCTTTCGTTGCAGATCCTTCCT
CCAAGTTCAAAGGTTCTCACGCACTTAGTTCCTTCCTCCAAGTTCTTTCAAGTTCAAAGGTTCTCACGCGCTTCGTTGTTCCAGTTCCTTCCCCACAAGTTGTTCTCACG
CGCTTCGCTACTTCCTCCAAAATTCGGAGGTTCTCATCCAAATTTGAAGGGTTCTCACGCGCTGCGCTGTAG
Protein sequenceShow/hide protein sequence
MSMTATEEENQCSVSTSTRPSAFQRLSVSTSKKSQSSTSIFDRLKVTSDQPRRKIDNLDVKLFNEVAVTKSFIVASRHFFLSSLKVLTRFRCSSFLQVRRFSRAYAAVPS
SKSEGSHALRCSSFLQVRRFSRASLLFLPPSSKVLTRFAAVPSSKYEGSHAFSLQFLPPSPKGFSRAFVADPSSKFKGSHALSSFLQVLSSSKVLTRFVVPVPSPQVVLT
RFATSSKIRRFSSKFEGFSRAAL