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Lag0036567 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036567
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr3:48640719..48647460
RNA-Seq ExpressionLag0036567
SyntenyLag0036567
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsIPR021109 - Aspartic peptidase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]2.5e-2868.57Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHIG-------------NVLFNVSVGSTGIVRGDDVCWLHTVFRAKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TWLELY ESVH+              +++FNVSVGSTGIVRGDDVCWLH VFR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHIG-------------NVLFNVSVGSTGIVRGDDVCWLHTVFRAKLAGGPG

Query:  GGVTT
          VTT
Subjt:  GGVTT

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]4.0e-2664.55Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHIGNVLFNVSVGSTGIVRGDDVCWLHTVFRAKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWLELY+E VH+            GIVR DDVCWLH VFRAK A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHIGNVLFNVSVGSTGIVRGDDVCWLHTVFRAKLA

Query:  GGPGGGVTTP
        GGPGGGV  P
Subjt:  GGPGGGVTTP

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.8e-2558.54Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHIGNVLFNVS----------VGSTGIVRGDDVCW
        MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   S+SSTWLELY+ESVH+  + +  S           GS GIVRGDDVCW
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHIGNVLFNVS----------VGSTGIVRGDDVCW

Query:  LHTVFRAKLAGGPGGGVTTPVSM
        LH VFRAK AGGP GGVT  V +
Subjt:  LHTVFRAKLAGGPGGGVTTPVSM

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]3.4e-2550.72Show/hide
Query:  IELPVPDTLPTSAESSRSSSSTWLELYIESVHIG-------------NVLFNVSVGSTGIVRGDDVCWLHTVFRAKLAGGPGGGVTT--------PVSMG
        IELPVPDTLPTSAESS S+SSTWLELY ESVH+              +++FNVSVGSTGIVRGDDVCWLH VFRAK  GGPGGGVTT         +  G
Subjt:  IELPVPDTLPTSAESSRSSSSTWLELYIESVHIG-------------NVLFNVSVGSTGIVRGDDVCWLHTVFRAKLAGGPGGGVTT--------PVSMG

Query:  GKELGRAHCDLGANINLMPLSVYRQLGIGEARPTTVTL
         +   R+  ++G    + P    +  GI   +    T+
Subjt:  GKELGRAHCDLGANINLMPLSVYRQLGIGEARPTTVTL

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]4.0e-2664.55Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHIGNVLFNVSVGSTGIVRGDDVCWLHTVFRAKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWLELY+E VH+            GIVR DDVCWLH VFRAK A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHIGNVLFNVSVGSTGIVRGDDVCWLHTVFRAKLA

Query:  GGPGGGVTTP
        GGPGGGV  P
Subjt:  GGPGGGVTTP

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein1.2e-2868.57Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHIG-------------NVLFNVSVGSTGIVRGDDVCWLHTVFRAKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TWLELY ESVH+              +++FNVSVGSTGIVRGDDVCWLH VFR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHIG-------------NVLFNVSVGSTGIVRGDDVCWLHTVFRAKLAGGPG

Query:  GGVTT
          VTT
Subjt:  GGVTT

A0A5A7VMG9 Reverse transcriptase1.9e-2664.55Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHIGNVLFNVSVGSTGIVRGDDVCWLHTVFRAKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWLELY+E VH+            GIVR DDVCWLH VFRAK A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHIGNVLFNVSVGSTGIVRGDDVCWLHTVFRAKLA

Query:  GGPGGGVTTP
        GGPGGGV  P
Subjt:  GGPGGGVTTP

A0A5D3CCC7 DNA/RNA polymerases superfamily protein2.8e-2558.54Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHIGNVLFNVS----------VGSTGIVRGDDVCW
        MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   S+SSTWLELY+ESVH+  + +  S           GS GIVRGDDVCW
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHIGNVLFNVS----------VGSTGIVRGDDVCW

Query:  LHTVFRAKLAGGPGGGVTTPVSM
        LH VFRAK AGGP GGVT  V +
Subjt:  LHTVFRAKLAGGPGGGVTTPVSM

A0A5D3CJX3 CCHC-type domain-containing protein1.6e-2550.72Show/hide
Query:  IELPVPDTLPTSAESSRSSSSTWLELYIESVHIG-------------NVLFNVSVGSTGIVRGDDVCWLHTVFRAKLAGGPGGGVTT--------PVSMG
        IELPVPDTLPTSAESS S+SSTWLELY ESVH+              +++FNVSVGSTGIVRGDDVCWLH VFRAK  GGPGGGVTT         +  G
Subjt:  IELPVPDTLPTSAESSRSSSSTWLELYIESVHIG-------------NVLFNVSVGSTGIVRGDDVCWLHTVFRAKLAGGPGGGVTT--------PVSMG

Query:  GKELGRAHCDLGANINLMPLSVYRQLGIGEARPTTVTL
         +   R+  ++G    + P    +  GI   +    T+
Subjt:  GKELGRAHCDLGANINLMPLSVYRQLGIGEARPTTVTL

A0A5D3DX39 Reverse transcriptase1.9e-2664.55Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHIGNVLFNVSVGSTGIVRGDDVCWLHTVFRAKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWLELY+E VH+            GIVR DDVCWLH VFRAK A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVHIGNVLFNVSVGSTGIVRGDDVCWLHTVFRAKLA

Query:  GGPGGGVTTP
        GGPGGGV  P
Subjt:  GGPGGGVTTP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACGCTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTACGTGGTTGGAGTTGTATATTGAGTCTGTTCATATTGGAAATGTATTGTTTAACGTTTCAGTTGGGTCAACAGGGATCGTTAGAGGAGACGATGTTTGTTGGC
TTCACACCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAACTCCTGTCTCCATGGGTGGAAAGGAGTTGGGGAGAGCACATTGTGATTTAGGTGCA
AACATAAACCTTATGCCTCTTTCGGTTTATCGACAGTTAGGTATAGGTGAAGCTAGGCCTACAACAGTTACACTCCAATTGGCAGATAAATCTATCACATATCTTGAAGG
TAAAATTGAGGATGTTCTAGTCCAGGTGTTGGATGAGTTTGTTGAGGACCACTTTGAGAAGGAATTGATGGAGTACCATACCCAAAAATTTGGAGAAATCCAAATTAAGG
ATTTGGAAATATGTGGATTGGAGTATGAGCATAAAGATGTAGCCGATACGAAAAGTCGGAAGAGAAAAAAAGATCAGGGAAATGAGCTTGAGACTGAGATGGAACTGAGT
GAAGAAGTTGAGCTTGATGAAAGATTTCGGTTCAGAATCCCAGAGAGTTCCAGTGATATTAAGTTGTTTGACAAGGGGATTATTGACACTGCTAGACTTCAGAGAGAAAC
CTTTTGCTTGAGCATTCCTTCTAGCCTAGTCATGACTGCAGCAAAAGTTCTGAGCGTCGAGACGCTGAGGAGACAACGTCTCGACGCTGTCGCCTTATCGCACGCGTCTG
GAATGGAAAACACGCAGCGTCGAGACGCTAAGGTCGCAGCGTCGAGACGCTGTGACCTTTTCGAGCCTAATCAGATATGGAAGGGCAGCGTCGAGACGCTCAAGGAGCAG
CATCTCGACGCTGGTCCTCACCGGAGCTTTGGAAGCAATTCGGGGCTTAAACGAGCGAAACCGGAGCGTAAAATGACAATTCTGCCCCTGGAGCCTCATCAGCGTCGAGA
CGCTCGTCATACAGAGTCGAGACGCTTGCTCAATAGCGTCACGACGCTAGGGCAATCCGAGAAATATTTTCCAAAATTGAAGGGACAATGTCAAGACGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACGCTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTACGTGGTTGGAGTTGTATATTGAGTCTGTTCATATTGGAAATGTATTGTTTAACGTTTCAGTTGGGTCAACAGGGATCGTTAGAGGAGACGATGTTTGTTGGC
TTCACACCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAACTCCTGTCTCCATGGGTGGAAAGGAGTTGGGGAGAGCACATTGTGATTTAGGTGCA
AACATAAACCTTATGCCTCTTTCGGTTTATCGACAGTTAGGTATAGGTGAAGCTAGGCCTACAACAGTTACACTCCAATTGGCAGATAAATCTATCACATATCTTGAAGG
TAAAATTGAGGATGTTCTAGTCCAGGTGTTGGATGAGTTTGTTGAGGACCACTTTGAGAAGGAATTGATGGAGTACCATACCCAAAAATTTGGAGAAATCCAAATTAAGG
ATTTGGAAATATGTGGATTGGAGTATGAGCATAAAGATGTAGCCGATACGAAAAGTCGGAAGAGAAAAAAAGATCAGGGAAATGAGCTTGAGACTGAGATGGAACTGAGT
GAAGAAGTTGAGCTTGATGAAAGATTTCGGTTCAGAATCCCAGAGAGTTCCAGTGATATTAAGTTGTTTGACAAGGGGATTATTGACACTGCTAGACTTCAGAGAGAAAC
CTTTTGCTTGAGCATTCCTTCTAGCCTAGTCATGACTGCAGCAAAAGTTCTGAGCGTCGAGACGCTGAGGAGACAACGTCTCGACGCTGTCGCCTTATCGCACGCGTCTG
GAATGGAAAACACGCAGCGTCGAGACGCTAAGGTCGCAGCGTCGAGACGCTGTGACCTTTTCGAGCCTAATCAGATATGGAAGGGCAGCGTCGAGACGCTCAAGGAGCAG
CATCTCGACGCTGGTCCTCACCGGAGCTTTGGAAGCAATTCGGGGCTTAAACGAGCGAAACCGGAGCGTAAAATGACAATTCTGCCCCTGGAGCCTCATCAGCGTCGAGA
CGCTCGTCATACAGAGTCGAGACGCTTGCTCAATAGCGTCACGACGCTAGGGCAATCCGAGAAATATTTTCCAAAATTGAAGGGACAATGTCAAGACGCTTGA
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHIGNVLFNVSVGSTGIVRGDDVCWLHTVFRAKLAGGPGGGVTTPVSMGGKELGRAHCDLGA
NINLMPLSVYRQLGIGEARPTTVTLQLADKSITYLEGKIEDVLVQVLDEFVEDHFEKELMEYHTQKFGEIQIKDLEICGLEYEHKDVADTKSRKRKKDQGNELETEMELS
EEVELDERFRFRIPESSSDIKLFDKGIIDTARLQRETFCLSIPSSLVMTAAKVLSVETLRRQRLDAVALSHASGMENTQRRDAKVAASRRCDLFEPNQIWKGSVETLKEQ
HLDAGPHRSFGSNSGLKRAKPERKMTILPLEPHQRRDARHTESRRLLNSVTTLGQSEKYFPKLKGQCQDA