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Lag0036573 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036573
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr3:48732148..48732882
RNA-Seq ExpressionLag0036573
SyntenyLag0036573
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015380691.1 uncharacterized protein LOC107174364 [Citrus sinensis]4.2e-2640.94Show/hide
Query:  GPWAFDRSLVVLKEPKDIASALETDFSDCSFWVQIHNVPMKWQTRGMAQHLGGKIGVVEEVGGSNGNDWIGPILWIRVRIRLDRPLRRGFHMQDDDGKDS
        GPW FDR+L+VL EPK I    +  F+  +FW+QI NVP+    + + Q LGG IG VEE+      + +G    IRV I +  PL++   ++ +   D 
Subjt:  GPWAFDRSLVVLKEPKDIASALETDFSDCSFWVQIHNVPMKWQTRGMAQHLGGKIGVVEEVGGSNGNDWIGPILWIRVRIRLDRPLRRGFHMQDDDGKDS

Query:  LCPVLYERLPDFCFECGCLGHSRRECEGVGASSSGGGEDQ--YGEWLRA
          PV+YERLPDFC+ CG +GH  +EC    A   G  ++Q  YG W++A
Subjt:  LCPVLYERLPDFCFECGCLGHSRRECEGVGASSSGGGEDQ--YGEWLRA

XP_015382889.1 uncharacterized protein LOC102626150 [Citrus sinensis]1.0e-2744.3Show/hide
Query:  GPWAFDRSLVVLKEPKDIASALETDFSDCSFWVQIHNVPMKWQTRGMAQHLGGKIGVVEEVGGSNGNDWIGPILWIRVRIRLDRPLRRGFHMQDD--DGK
        GPW FDR+L+VL EP  I    +  FS  S WVQIH+VP+   ++ MA  LG  IG VEEV  ++  + +GP L +R+ + + +PL++   ++ D  D +
Subjt:  GPWAFDRSLVVLKEPKDIASALETDFSDCSFWVQIHNVPMKWQTRGMAQHLGGKIGVVEEVGGSNGNDWIGPILWIRVRIRLDRPLRRGFHMQDD--DGK

Query:  DSLCPVLYERLPDFCFECGCLGHSRRECEGVGASSSGGGEDQYGEWLRA
        D    V+YERLPDFCF CG +GH  REC    + S    E  YG WLRA
Subjt:  DSLCPVLYERLPDFCFECGCLGHSRRECEGVGASSSGGGEDQYGEWLRA

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]8.1e-3846.67Show/hide
Query:  MGTGPWAFDRSLVVLKEPKDIASALETDFSDCSFWVQIHNVPMKWQTRGMAQHLGGKIGVVEEVGGSNGNDWIGPILWIRVRIRLDRPLRRGFHMQDDDG
        + +GPW F++SL+VL  P      L+ +F+ C+FW+QIHN+P +  +  MA  LG K+G VEE+ G   + W GP + +RV+I + +PLRRG  +++ DG
Subjt:  MGTGPWAFDRSLVVLKEPKDIASALETDFSDCSFWVQIHNVPMKWQTRGMAQHLGGKIGVVEEVGGSNGNDWIGPILWIRVRIRLDRPLRRGFHMQDDDG

Query:  KDSLCPVLYERLPDFCFECGCLGHSRRECEGVGASSSGGGEDQYGEWLRA
        KD  CP+ YE+LPDFC+ECG +GHS RECE      +    +QYG+WLRA
Subjt:  KDSLCPVLYERLPDFCFECGCLGHSRRECEGVGASSSGGGEDQYGEWLRA

XP_022156711.1 uncharacterized protein LOC111023555 [Momordica charantia]4.2e-3451.18Show/hide
Query:  GPWAFDRSLVVLKEPKDIASALETDFSDCSFWVQIHNVPMKWQTRGMAQHLGGKIGVVEEVGGSNGNDWIGPILWIRVRIRLDRPLRRGFHMQDDDGKDS
        GPW FD+SL++L         L+ D S C+FWVQIH +  +  T+ MA+ LG ++G VEEV G +  DW+ P LW+RV+I + +PLRRG  ++  DGKD 
Subjt:  GPWAFDRSLVVLKEPKDIASALETDFSDCSFWVQIHNVPMKWQTRGMAQHLGGKIGVVEEVGGSNGNDWIGPILWIRVRIRLDRPLRRGFHMQDDDGKDS

Query:  LCPVLYERLPDFCFECGCLGHSRRECE
         CP+ YERLPDFC+ CGC+GHS RE E
Subjt:  LCPVLYERLPDFCFECGCLGHSRRECE

XP_024955847.1 uncharacterized protein LOC112498636 [Citrus sinensis]3.2e-2639.1Show/hide
Query:  MGTGPWAFDRSLVVLKEPKDIASALETDFSDCSFWVQIHNVPMKWQTRGMAQHLGGKIGVVEEVGGSNGNDWIGPILWIRVRIRLDRPLRRGFHMQDDDG
        MG GPW FD +L+VL EPK I       F+   FWV + N+P+ W  R M Q LG  IG VEE+      + IG I  +R+ + + +PLR+   ++ +D 
Subjt:  MGTGPWAFDRSLVVLKEPKDIASALETDFSDCSFWVQIHNVPMKWQTRGMAQHLGGKIGVVEEVGGSNGNDWIGPILWIRVRIRLDRPLRRGFHMQDDDG

Query:  KDSLCPVLYERLPDFCFECGCLGHSRRECEGVGASSSGGGEDQYGEWLRAGAFLGE
             P+LYERLPDFCF CG +GH  +EC  +        +  YG W++A    G+
Subjt:  KDSLCPVLYERLPDFCFECGCLGHSRRECEGVGASSSGGGEDQYGEWLRAGAFLGE

TrEMBL top hitse value%identityAlignment
A0A1S8AC25 CCHC-type domain-containing protein (Fragment)1.0e-2542.95Show/hide
Query:  GPWAFDRSLVVLKEPKDIASALETDFSDCSFWVQIHNVPMKWQTRGMAQHLGGKIGVVEEVGGSNGNDWIGPILWIRVRIRLDRPLRR--GFHMQDDDGK
        GPW FDR+L+ L EP  I    + DFS  SFWVQIH+VP+   ++ MA  LG  IG VEEV      +  G  L +R+ + + +PL++      +++D  
Subjt:  GPWAFDRSLVVLKEPKDIASALETDFSDCSFWVQIHNVPMKWQTRGMAQHLGGKIGVVEEVGGSNGNDWIGPILWIRVRIRLDRPLRR--GFHMQDDDGK

Query:  DSLCPVLYERLPDFCFECGCLGHSRRECEGVGASSSGGGEDQYGEWLRA
        D    V+YERLPDFCF CG +GH  REC      S    E  YG WL+A
Subjt:  DSLCPVLYERLPDFCFECGCLGHSRRECEGVGASSSGGGEDQYGEWLRA

A0A5C7HA98 CCHC-type domain-containing protein1.7e-2542.67Show/hide
Query:  TGPWAFDRSLVVLKEPKDIASALETDFSDCSFWVQIHNVPMKWQTRGMAQHLGGKIGVVEEVGGSNGNDWIGPILWIRVRIRLDRPLRRGFHMQD-DDGK
        +GPW FD SL+VL+EP    S     F    FWVQI N+PM   T+ +A+ LGG IG V EV      D +G  + +RV + + +PLRR  H+    D +
Subjt:  TGPWAFDRSLVVLKEPKDIASALETDFSDCSFWVQIHNVPMKWQTRGMAQHLGGKIGVVEEVGGSNGNDWIGPILWIRVRIRLDRPLRRGFHMQD-DDGK

Query:  DSLCPVLYERLPDFCFECGCLGHSRREC-EGVGASSSGGGEDQYGEWLRA
        +++ P+ YERLP FCF CG LGH+   C EG   S     +  YG W+RA
Subjt:  DSLCPVLYERLPDFCFECGCLGHSRREC-EGVGASSSGGGEDQYGEWLRA

A0A5C7IT66 CCHC-type domain-containing protein1.0e-2543.05Show/hide
Query:  GPWAFDRSLVVLKEPKDIASALETDFSDCSFWVQIHNVPMKWQTRGMAQHLGGKIGVVEEVGGSNGNDWIGPILWIRVRIRLDRPLRRGFHMQD-DDGKD
        GPW+FD +L+VL+EP+   +     F+   FWVQI NVPM   T+ + + LG  IG V EV      D +G  + +RV + +D PLRR   +    DG++
Subjt:  GPWAFDRSLVVLKEPKDIASALETDFSDCSFWVQIHNVPMKWQTRGMAQHLGGKIGVVEEVGGSNGNDWIGPILWIRVRIRLDRPLRRGFHMQD-DDGKD

Query:  SLCPVLYERLPDFCFECGCLGHSRRECEGVGASSSGGGEDQ-YGEWLRAGA
        ++ P+ YERLP FCF CG +GHS REC   G      G    YG WLRA A
Subjt:  SLCPVLYERLPDFCFECGCLGHSRRECEGVGASSSGGGEDQ-YGEWLRAGA

A0A6J1D765 uncharacterized protein LOC1110179023.9e-3846.67Show/hide
Query:  MGTGPWAFDRSLVVLKEPKDIASALETDFSDCSFWVQIHNVPMKWQTRGMAQHLGGKIGVVEEVGGSNGNDWIGPILWIRVRIRLDRPLRRGFHMQDDDG
        + +GPW F++SL+VL  P      L+ +F+ C+FW+QIHN+P +  +  MA  LG K+G VEE+ G   + W GP + +RV+I + +PLRRG  +++ DG
Subjt:  MGTGPWAFDRSLVVLKEPKDIASALETDFSDCSFWVQIHNVPMKWQTRGMAQHLGGKIGVVEEVGGSNGNDWIGPILWIRVRIRLDRPLRRGFHMQDDDG

Query:  KDSLCPVLYERLPDFCFECGCLGHSRRECEGVGASSSGGGEDQYGEWLRA
        KD  CP+ YE+LPDFC+ECG +GHS RECE      +    +QYG+WLRA
Subjt:  KDSLCPVLYERLPDFCFECGCLGHSRRECEGVGASSSGGGEDQYGEWLRA

A0A6J1DVS4 uncharacterized protein LOC1110235552.0e-3451.18Show/hide
Query:  GPWAFDRSLVVLKEPKDIASALETDFSDCSFWVQIHNVPMKWQTRGMAQHLGGKIGVVEEVGGSNGNDWIGPILWIRVRIRLDRPLRRGFHMQDDDGKDS
        GPW FD+SL++L         L+ D S C+FWVQIH +  +  T+ MA+ LG ++G VEEV G +  DW+ P LW+RV+I + +PLRRG  ++  DGKD 
Subjt:  GPWAFDRSLVVLKEPKDIASALETDFSDCSFWVQIHNVPMKWQTRGMAQHLGGKIGVVEEVGGSNGNDWIGPILWIRVRIRLDRPLRRGFHMQDDDGKDS

Query:  LCPVLYERLPDFCFECGCLGHSRRECE
         CP+ YERLPDFC+ CGC+GHS RE E
Subjt:  LCPVLYERLPDFCFECGCLGHSRRECE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G42140.1 zinc ion binding;nucleic acid binding2.3e-0622.86Show/hide
Query:  GPWAFDRSLVVLKEPKDIASALETDFSDCSFWVQIHNVPMKWQTRGMAQHLGGKIGVVEEVGGSNGNDWIGPILWIRVRIRLDRPLRRGFHMQDDDGKD-
        GPW+F+  + V++    + S  + +F    FW+QI  +P+++ T  +   +G                                  R G  ++ + G+D 
Subjt:  GPWAFDRSLVVLKEPKDIASALETDFSDCSFWVQIHNVPMKWQTRGMAQHLGGKIGVVEEVGGSNGNDWIGPILWIRVRIRLDRPLRRGFHMQDDDGKD-

Query:  SLCPVLYERLPDFCFECGCLGHSRRECEGVGASSSGGGED
        S+    YE+L +FC  CG L H   EC   G       +D
Subjt:  SLCPVLYERLPDFCFECGCLGHSRRECEGVGASSSGGGED


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTACTGGTCCTTGGGCTTTTGACCGATCCCTGGTTGTGCTTAAGGAACCAAAAGATATTGCGTCGGCACTAGAAACGGACTTCAGTGACTGTTCTTTCTGGGTGCA
GATTCATAATGTGCCTATGAAGTGGCAAACGAGGGGCATGGCGCAACACCTGGGAGGAAAGATTGGGGTGGTTGAAGAGGTGGGAGGTTCAAATGGGAATGATTGGATAG
GCCCTATCTTGTGGATTAGAGTTCGTATTCGGTTGGATCGACCTCTTCGAAGAGGTTTCCACATGCAGGATGATGATGGGAAGGATTCTTTGTGCCCTGTGCTGTATGAG
CGACTCCCGGATTTCTGTTTTGAATGTGGATGTCTAGGCCACTCGAGACGGGAATGTGAGGGGGTGGGGGCGAGCTCCTCGGGAGGAGGGGAGGACCAATATGGTGAGTG
GTTGAGAGCAGGGGCTTTCCTTGGTGAGGGTATCCGACGGGAACCATACCAGGTAGGTGCAAGTGGCGGTGGGAAGCAGGCTGTTGTGGCTGTAGTGGTGCCCCAAACTG
GTTCAGGGGAGGCAGCGGACCCTGTTCAGAGTGAGGTGCATGGGAAGGAGGCAGGTGCTTCTGAAAGTACTGTTGGGGAGGGTTTGTCAGCCCCTGCCGTTGATGACTGC
ACAGTGGGGGGAGGGAAGGAAGTTCGGGTGGAGGGCGGCAGAAAGGTAAACAGAAGATGGGGCATGATGTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTACTGGTCCTTGGGCTTTTGACCGATCCCTGGTTGTGCTTAAGGAACCAAAAGATATTGCGTCGGCACTAGAAACGGACTTCAGTGACTGTTCTTTCTGGGTGCA
GATTCATAATGTGCCTATGAAGTGGCAAACGAGGGGCATGGCGCAACACCTGGGAGGAAAGATTGGGGTGGTTGAAGAGGTGGGAGGTTCAAATGGGAATGATTGGATAG
GCCCTATCTTGTGGATTAGAGTTCGTATTCGGTTGGATCGACCTCTTCGAAGAGGTTTCCACATGCAGGATGATGATGGGAAGGATTCTTTGTGCCCTGTGCTGTATGAG
CGACTCCCGGATTTCTGTTTTGAATGTGGATGTCTAGGCCACTCGAGACGGGAATGTGAGGGGGTGGGGGCGAGCTCCTCGGGAGGAGGGGAGGACCAATATGGTGAGTG
GTTGAGAGCAGGGGCTTTCCTTGGTGAGGGTATCCGACGGGAACCATACCAGGTAGGTGCAAGTGGCGGTGGGAAGCAGGCTGTTGTGGCTGTAGTGGTGCCCCAAACTG
GTTCAGGGGAGGCAGCGGACCCTGTTCAGAGTGAGGTGCATGGGAAGGAGGCAGGTGCTTCTGAAAGTACTGTTGGGGAGGGTTTGTCAGCCCCTGCCGTTGATGACTGC
ACAGTGGGGGGAGGGAAGGAAGTTCGGGTGGAGGGCGGCAGAAAGGTAAACAGAAGATGGGGCATGATGTTCTGA
Protein sequenceShow/hide protein sequence
MGTGPWAFDRSLVVLKEPKDIASALETDFSDCSFWVQIHNVPMKWQTRGMAQHLGGKIGVVEEVGGSNGNDWIGPILWIRVRIRLDRPLRRGFHMQDDDGKDSLCPVLYE
RLPDFCFECGCLGHSRRECEGVGASSSGGGEDQYGEWLRAGAFLGEGIRREPYQVGASGGGKQAVVAVVVPQTGSGEAADPVQSEVHGKEAGASESTVGEGLSAPAVDDC
TVGGGKEVRVEGGRKVNRRWGMMF