CuGenDBv2

Gene ID	Lag0036724
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	MYND-type domain-containing protein
Genome location	chr2:630014..631571
RNA-Seq Expression	Lag0036724
Synteny	Lag0036724
Gene Ontology terms	GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR044508 - F-box protein At5g50450/At1g67340-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6573130.1 F-box protein, partial [Cucurbita argyrosperma subsp. sororia]

4.4e-48

83.33

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Query:  SDKNLHVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRRLLIEANAHELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEAHPAN
        SDKNL  GVALCGRAA  GHIDALRELGHCLQD YGVA+N SEGRRLLIEANA EL SITNSSLRRLNCS DR + TDS+GSLLSD+G NIPA E HPAN
Subjt:  SDKNLHVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRRLLIEANAHELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEAHPAN

Query:  QFLRNWFASGRGFIAEGLRL
        QFLR+WF SGRGFIAEGLRL
Subjt:  QFLRNWFASGRGFIAEGLRL

XP_008439699.1 PREDICTED: F-box protein At1g67340 [Cucumis melo]

5.8e-48

82.5

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Query:  SDKNLHVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRRLLIEANAHELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEAHPAN
        SDKNL  GVALCGRAAY GHIDALRELGHCLQD YGV +N SEGRRLLIEANA EL  ITNSSLRRL+CS  R S TDS GSLLSD+GCN PA EAHPAN
Subjt:  SDKNLHVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRRLLIEANAHELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEAHPAN

Query:  QFLRNWFASGRGFIAEGLRL
        QFLR+WFASGRG IAEGLRL
Subjt:  QFLRNWFASGRGFIAEGLRL

XP_022955215.1 F-box protein At5g50450 [Cucurbita moschata]

4.4e-48

83.33

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Query:  SDKNLHVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRRLLIEANAHELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEAHPAN
        SDKNL  GVALCGRAA  GHIDALRELGHCLQD YGVA+N SEGRRLLIEANA EL SITNSSLRRLNCS DR + TDS+GSLLSD+G NIPA E HPAN
Subjt:  SDKNLHVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRRLLIEANAHELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEAHPAN

Query:  QFLRNWFASGRGFIAEGLRL
        QFLR+WF SGRGFIAEGLRL
Subjt:  QFLRNWFASGRGFIAEGLRL

XP_022994416.1 F-box protein At5g50450-like [Cucurbita maxima]

2.0e-48

84.17

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Query:  SDKNLHVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRRLLIEANAHELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEAHPAN
        SDKNL  GVALCGRAA  GHIDALRELGHCLQD YGVA+N SEGRRLLIEANA EL SITNSSLRRLNCS DR S TDS+GSLLSD+G NIPA E HPAN
Subjt:  SDKNLHVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRRLLIEANAHELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEAHPAN

Query:  QFLRNWFASGRGFIAEGLRL
        QFLR+WF SGRGFIAEGLRL
Subjt:  QFLRNWFASGRGFIAEGLRL

XP_038894785.1 F-box protein At1g67340 [Benincasa hispida]

4.0e-49

82.5

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Query:  SDKNLHVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRRLLIEANAHELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEAHPAN
        SDKNL  GVALCGRAAY GHIDALRELGHCLQD YGV +N SEGRRLLIEANA EL SITNSSLRRL+CSGD  S  DS GSLLSD+GCN PA EAHPAN
Subjt:  SDKNLHVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRRLLIEANAHELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEAHPAN

Query:  QFLRNWFASGRGFIAEGLRL
        +FLR+WFASGRGF+AEGLRL
Subjt:  QFLRNWFASGRGFIAEGLRL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LTV0 MYND-type domain-containing protein

4.8e-48

82.5

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Query:  SDKNLHVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRRLLIEANAHELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEAHPAN
        SDKNL  GVALCGRAAY GHIDALRELGHCLQD YGV +N SEGRRLLIEANA EL  ITNSSLRRL+CS  R S TDS GSLLSD+GCN PA EAHPAN
Subjt:  SDKNLHVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRRLLIEANAHELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEAHPAN

Query:  QFLRNWFASGRGFIAEGLRL
        QFLR+WFASGRG IAEGLRL
Subjt:  QFLRNWFASGRGFIAEGLRL

A0A1S3AZD5 F-box protein At1g67340

2.8e-48

82.5

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Query:  SDKNLHVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRRLLIEANAHELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEAHPAN
        SDKNL  GVALCGRAAY GHIDALRELGHCLQD YGV +N SEGRRLLIEANA EL  ITNSSLRRL+CS  R S TDS GSLLSD+GCN PA EAHPAN
Subjt:  SDKNLHVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRRLLIEANAHELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEAHPAN

Query:  QFLRNWFASGRGFIAEGLRL
        QFLR+WFASGRG IAEGLRL
Subjt:  QFLRNWFASGRGFIAEGLRL

A0A5A7UP50 F-box protein

2.8e-48

82.5

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Query:  SDKNLHVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRRLLIEANAHELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEAHPAN
        SDKNL  GVALCGRAAY GHIDALRELGHCLQD YGV +N SEGRRLLIEANA EL  ITNSSLRRL+CS  R S TDS GSLLSD+GCN PA EAHPAN
Subjt:  SDKNLHVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRRLLIEANAHELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEAHPAN

Query:  QFLRNWFASGRGFIAEGLRL
        QFLR+WFASGRG IAEGLRL
Subjt:  QFLRNWFASGRGFIAEGLRL

A0A6J1GUJ3 F-box protein At5g50450

2.1e-48

83.33

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Query:  SDKNLHVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRRLLIEANAHELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEAHPAN
        SDKNL  GVALCGRAA  GHIDALRELGHCLQD YGVA+N SEGRRLLIEANA EL SITNSSLRRLNCS DR + TDS+GSLLSD+G NIPA E HPAN
Subjt:  SDKNLHVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRRLLIEANAHELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEAHPAN

Query:  QFLRNWFASGRGFIAEGLRL
        QFLR+WF SGRGFIAEGLRL
Subjt:  QFLRNWFASGRGFIAEGLRL

A0A6J1JZ31 F-box protein At5g50450-like

9.6e-49

84.17

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Query:  SDKNLHVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRRLLIEANAHELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEAHPAN
        SDKNL  GVALCGRAA  GHIDALRELGHCLQD YGVA+N SEGRRLLIEANA EL SITNSSLRRLNCS DR S TDS+GSLLSD+G NIPA E HPAN
Subjt:  SDKNLHVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRRLLIEANAHELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEAHPAN

Query:  QFLRNWFASGRGFIAEGLRL
        QFLR+WF SGRGFIAEGLRL
Subjt:  QFLRNWFASGRGFIAEGLRL

SwissProt top hits

e value

%identity

Alignment

Q9FK27 F-box protein At5g50450

2.6e-27

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Query:  SDKNLHVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRRLLIEANAHELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEAHPAN
        +DKNL  GVALC R+AY GH+DALRELGHCLQD YGV  + SEGRRLLI+ANA EL     S L     SGD           L+D    +P  E HP N
Subjt:  SDKNLHVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRRLLIEANAHELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEAHPAN

Query:  QFLRNWFASGRGFIAEGLRL
        +FL+ WF+SGR  +AEGLR+
Subjt:  QFLRNWFASGRGFIAEGLRL

Q9FYF9 F-box protein At1g67340

2.1e-29

52.71

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Query:  SDKNLHVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRRLLIEANAHELESITNSSLRR----LNCSGDRLSPTDSAGS----LLSDYGCNIP
        +DK+L  GVALC RAA+ GH+DALRELGHCLQD YGV +N SEGRR L++ANA EL ++ +S ++     L+ S        + G     LLSD+GCN+P
Subjt:  SDKNLHVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRRLLIEANAHELESITNSSLRR----LNCSGDRLSPTDSAGS----LLSDYGCNIP

Query:  ALEAHPANQFLRNWFA-SGRGFIAEGLRL
        A E HPAN+FL +WFA  G     +GLRL
Subjt:  ALEAHPANQFLRNWFA-SGRGFIAEGLRL

Arabidopsis top hits

e value

%identity

Alignment

AT1G67340.1 HCP-like superfamily protein with MYND-type zinc finger

1.5e-30

52.71

Show/hide

Query:  SDKNLHVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRRLLIEANAHELESITNSSLRR----LNCSGDRLSPTDSAGS----LLSDYGCNIP
        +DK+L  GVALC RAA+ GH+DALRELGHCLQD YGV +N SEGRR L++ANA EL ++ +S ++     L+ S        + G     LLSD+GCN+P
Subjt:  SDKNLHVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRRLLIEANAHELESITNSSLRR----LNCSGDRLSPTDSAGS----LLSDYGCNIP

Query:  ALEAHPANQFLRNWFA-SGRGFIAEGLRL
        A E HPAN+FL +WFA  G     +GLRL
Subjt:  ALEAHPANQFLRNWFA-SGRGFIAEGLRL

AT5G50450.1 HCP-like superfamily protein with MYND-type zinc finger

1.9e-28

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Query:  SDKNLHVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRRLLIEANAHELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEAHPAN
        +DKNL  GVALC R+AY GH+DALRELGHCLQD YGV  + SEGRRLLI+ANA EL     S L     SGD           L+D    +P  E HP N
Subjt:  SDKNLHVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRRLLIEANAHELESITNSSLRRLNCSGDRLSPTDSAGSLLSDYGCNIPALEAHPAN

Query:  QFLRNWFASGRGFIAEGLRL
        +FL+ WF+SGR  +AEGLR+
Subjt:  QFLRNWFASGRGFIAEGLRL

Sequences

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CDS sequence

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ATGGGTCGGGTCGGTTGTACGGACGAACCGGCCCAACCCGACCCGAACCGGGTCAGGTCGAGTCATCTGCGGGTTTTTTTCCGCACATTTTATCTAGTTGTTCCCAGCGA
CAAGAATCTCCATGTTGGTGTGGCTCTGTGCGGACGAGCCGCATATTTCGGCCATATCGACGCGCTTCGTGAACTAGGCCACTGCCTTCAAGACAGTTACGGCGTCGCTG
AAAACACATCCGAGGGACGTCGTCTCCTAATCGAAGCCAACGCGCATGAGCTCGAGTCCATAACAAACTCCTCCCTCCGCCGTCTCAACTGCTCGGGCGACCGCCTGTCT
CCAACAGATTCCGCCGGATCGCTCCTAAGTGACTACGGCTGCAACATTCCGGCGTTGGAGGCTCATCCGGCAAACCAATTTCTAAGAAATTGGTTCGCATCGGGCCGTGG
ATTTATCGCTGAAGGACTGAGGCTGTGGAAGGCCAGAGACTCGGCTCCATGA

mRNA sequence

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Protein sequence

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MGRVGCTDEPAQPDPNRVRSSHLRVFFRTFYLVVPSDKNLHVGVALCGRAAYFGHIDALRELGHCLQDSYGVAENTSEGRRLLIEANAHELESITNSSLRRLNCSGDRLS
PTDSAGSLLSDYGCNIPALEAHPANQFLRNWFASGRGFIAEGLRLWKARDSAP

Lag0036724 (gene) of Sponge gourd (AG-4) v1 genome