CuGenDBv2

Gene ID	Lag0036799
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Nucleic acid-binding, OB-fold containing protein
Genome location	chr2:1224002..1226789
RNA-Seq Expression	Lag0036799
Synteny	Lag0036799
Gene Ontology terms	GO:0006352 - DNA-templated transcription, initiation (biological process) GO:0005736 - RNA polymerase I complex (cellular component) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR036898 - RNA polymerase Rpb7-like, N-terminal domain superfamily IPR045113 - RNA polymerase Rpb7-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008466499.1 PREDICTED: uncharacterized protein LOC103503892 isoform X1 [Cucumis melo]

7.3e-101

93.3

Show/hide

Query:  MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIH
        MEGLKVSDANMV+YVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDK+AKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIH
Subjt:  MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIH

Query:  VIVLGFASAVITDEDIRDEFKHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNSIEGSESNRSKKKMRDNEGES
        VIVLGFASAVIT EDIRDEFKHRTKHGEEMFVSRAHK+HVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS+EGS S  SKKKMR+NEG  
Subjt:  VIVLGFASAVITDEDIRDEFKHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNSIEGSESNRSKKKMRDNEGES

Query:  LLQDSVATD
        +LQD+V TD
Subjt:  LLQDSVATD

XP_022148351.1 uncharacterized protein LOC111016757 [Momordica charantia]

4.3e-101

92.34

Show/hide

Query:  MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIH
        MEGLKVSDAN+V+YVHPSKSKKVSQAVLRELGAMLLKFDE+FEGVLLAY+AKI DKSAKILSGVHPYFGVT+KAKLLLFSPKPNMLLEGKVVKLRQES+H
Subjt:  MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIH

Query:  VIVLGFASAVITDEDIRDEFKHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNSIEGSESNRSKKKMRDNEGES
        VIVLGFASA ITDEDIRDEFKHRTKH EEMFVSRAHK+HVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNSIEGS ++R +KK RDNEGES
Subjt:  VIVLGFASAVITDEDIRDEFKHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNSIEGSESNRSKKKMRDNEGES

Query:  LLQDSVATD
        LLQDSVATD
Subjt:  LLQDSVATD

XP_022982461.1 uncharacterized protein LOC111481277 isoform X1 [Cucurbita maxima]

3.3e-101

93.3

Show/hide

Query:  MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIH
        MEGLKVSDAN+VIYVHPSKSKKVSQAVLR+LGAMLLKFDE+FEGVLLAYEA IIDKSAKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIH
Subjt:  MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIH

Query:  VIVLGFASAVITDEDIRDEFKHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNSIEGSESNRSKKKMRDNEGES
        VIVLGFASAVITDEDIR+EFKHRTKHGEEMFVSRAHK+HVIKVGTM+RFLVKSFDEEILHISGSLVPSHTGSIH LEKNS+EGS +NRS+KKMRDN+ ES
Subjt:  VIVLGFASAVITDEDIRDEFKHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNSIEGSESNRSKKKMRDNEGES

Query:  LLQDSVATD
        LLQDSVATD
Subjt:  LLQDSVATD

XP_023523351.1 uncharacterized protein LOC111787571 [Cucurbita pepo subsp. pepo]

1.2e-100

93.3

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Query:  MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIH
        MEGLKVSDAN+VIYVHPSKSKKVSQAVLRELGAMLLKFDE+FEGVLLAYEA IIDKSAKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIH
Subjt:  MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIH

Query:  VIVLGFASAVITDEDIRDEFKHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNSIEGSESNRSKKKMRDNEGES
        VIVLGFASAVITDEDIRDEFKHRTKHGEEMFVSRA+K+HVIKVGTM+RFLVKSFDEEILHISGSLVPSHTGSIH LEKNS+EGS +NRS+KKMRD + ES
Subjt:  VIVLGFASAVITDEDIRDEFKHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNSIEGSESNRSKKKMRDNEGES

Query:  LLQDSVATD
        LLQDSVATD
Subjt:  LLQDSVATD

XP_038898978.1 uncharacterized protein LOC120086413 isoform X3 [Benincasa hispida]

6.1e-100

91.39

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Query:  MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIH
        M+GLKVSDANMV+YVHPSKSKKVSQAVLR LGAMLLKFDEKFEGVLLAYEAKIIDK AKILSGVHPYFGVTIKAKLLLFSPKPNML+EGKVVKLRQESIH
Subjt:  MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIH

Query:  VIVLGFASAVITDEDIRDEFKHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNSIEGSESNRSKKKMRDNEGES
        VIVLGFASAVIT+EDIRDEFKHRTKHGEEMFVSRAHK+HVIKVGTMIRFLVKSFDEEILHI+GSLVPSHTGSIHWLEKNS+EG+ ++ SKKKMR+NEGE 
Subjt:  VIVLGFASAVITDEDIRDEFKHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNSIEGSESNRSKKKMRDNEGES

Query:  LLQDSVATD
        +LQDSVAT+
Subjt:  LLQDSVATD

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CRF8 uncharacterized protein LOC103503892 isoform X2

5.1e-100

93.3

Show/hide

Query:  MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIH
        MEGLKVSDANMV+YVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDK+AKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIH
Subjt:  MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIH

Query:  VIVLGFASAVITDEDIRDEFKHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNSIEGSESNRSKKKMRDNEGES
        VIVLGFASAVIT EDIRDEFKHRTKHGEEMFVSRAHK+HVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS+EGS S  SKKKMR+NEG  
Subjt:  VIVLGFASAVITDEDIRDEFKHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNSIEGSESNRSKKKMRDNEGES

Query:  LLQDSVATD
        +LQD+V TD
Subjt:  LLQDSVATD

A0A1S4E5I5 uncharacterized protein LOC103503892 isoform X1

3.5e-101

93.3

Show/hide

Query:  MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIH
        MEGLKVSDANMV+YVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDK+AKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIH
Subjt:  MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIH

Query:  VIVLGFASAVITDEDIRDEFKHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNSIEGSESNRSKKKMRDNEGES
        VIVLGFASAVIT EDIRDEFKHRTKHGEEMFVSRAHK+HVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS+EGS S  SKKKMR+NEG  
Subjt:  VIVLGFASAVITDEDIRDEFKHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNSIEGSESNRSKKKMRDNEGES

Query:  LLQDSVATD
        +LQD+V TD
Subjt:  LLQDSVATD

A0A5D3E6A0 Putative DNA-directed RNA polymerase I subunit RPA43

3.5e-101

93.3

Show/hide

Query:  MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIH
        MEGLKVSDANMV+YVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDK+AKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIH
Subjt:  MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIH

Query:  VIVLGFASAVITDEDIRDEFKHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNSIEGSESNRSKKKMRDNEGES
        VIVLGFASAVIT EDIRDEFKHRTKHGEEMFVSRAHK+HVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS+EGS S  SKKKMR+NEG  
Subjt:  VIVLGFASAVITDEDIRDEFKHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNSIEGSESNRSKKKMRDNEGES

Query:  LLQDSVATD
        +LQD+V TD
Subjt:  LLQDSVATD

A0A6J1D5Y9 uncharacterized protein LOC111016757

2.1e-101

92.34

Show/hide

Query:  MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIH
        MEGLKVSDAN+V+YVHPSKSKKVSQAVLRELGAMLLKFDE+FEGVLLAY+AKI DKSAKILSGVHPYFGVT+KAKLLLFSPKPNMLLEGKVVKLRQES+H
Subjt:  MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIH

Query:  VIVLGFASAVITDEDIRDEFKHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNSIEGSESNRSKKKMRDNEGES
        VIVLGFASA ITDEDIRDEFKHRTKH EEMFVSRAHK+HVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNSIEGS ++R +KK RDNEGES
Subjt:  VIVLGFASAVITDEDIRDEFKHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNSIEGSESNRSKKKMRDNEGES

Query:  LLQDSVATD
        LLQDSVATD
Subjt:  LLQDSVATD

A0A6J1IWP0 uncharacterized protein LOC111481277 isoform X1

1.6e-101

93.3

Show/hide

Query:  MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIH
        MEGLKVSDAN+VIYVHPSKSKKVSQAVLR+LGAMLLKFDE+FEGVLLAYEA IIDKSAKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIH
Subjt:  MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIH

Query:  VIVLGFASAVITDEDIRDEFKHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNSIEGSESNRSKKKMRDNEGES
        VIVLGFASAVITDEDIR+EFKHRTKHGEEMFVSRAHK+HVIKVGTM+RFLVKSFDEEILHISGSLVPSHTGSIH LEKNS+EGS +NRS+KKMRDN+ ES
Subjt:  VIVLGFASAVITDEDIRDEFKHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNSIEGSESNRSKKKMRDNEGES

Query:  LLQDSVATD
        LLQDSVATD
Subjt:  LLQDSVATD

SwissProt top hits

e value

%identity

Alignment

O43036 DNA-directed RNA polymerase I subunit rpa43

2.4e-06

23.93

Show/hide

Query:  NMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYE-AKIIDKSAKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFAS
        ++ + + P  S+    A+   + +M+L    +  G++LAY+  + ++KSAK++    P+  + ++  +L+FSPK    LEGK+  +    I +++LG  +
Subjt:  NMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYE-AKIIDKSAKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFAS

Query:  AVITDEDI-RDEFKHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEE--ILHISGSLVPS
        A I  + I +D         EE    + +  ++++ G  + F+V     E  +  + G+L  S
Subjt:  AVITDEDI-RDEFKHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEE--ILHISGSLVPS

Arabidopsis top hits

e value

%identity

Alignment

AT1G75670.1 DNA-directed RNA polymerases

4.1e-62

56.19

Show/hide

Query:  MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIH
        MEGLK+S+A ++I++HPS+S+ V Q + REL ++L +++E F+GVLLAY+A +  K AKIL+G+HPYFGV +  +LLLF PKP   +EGK+VK+  ESIH
Subjt:  MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIH

Query:  VIVLGFASAVITDEDIRDEFKHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNSIEGSESNRSKKKMR
        VIVLGF++AVITD DIR+EFK+R + GE  FVSR+HK H +K+GTM+R  V+SFDEE++HI+GSL+P +TG + WLEK S E   ++R  K+ +
Subjt:  VIVLGFASAVITDEDIRDEFKHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNSIEGSESNRSKKKMR

AT1G75670.2 DNA-directed RNA polymerases

4.1e-62

56.19

Show/hide

Query:  MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIH
        MEGLK+S+A ++I++HPS+S+ V Q + REL ++L +++E F+GVLLAY+A +  K AKIL+G+HPYFGV +  +LLLF PKP   +EGK+VK+  ESIH
Subjt:  MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIH

Query:  VIVLGFASAVITDEDIRDEFKHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNSIEGSESNRSKKKMR
        VIVLGF++AVITD DIR+EFK+R + GE  FVSR+HK H +K+GTM+R  V+SFDEE++HI+GSL+P +TG + WLEK S E   ++R  K+ +
Subjt:  VIVLGFASAVITDEDIRDEFKHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNSIEGSESNRSKKKMR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAGGGGCTGAAGGTTTCGGATGCCAATATGGTTATTTATGTTCACCCTTCGAAAAGTAAGAAGGTTTCGCAAGCGGTGCTTCGAGAGCTTGGCGCTATGCTTCTGAA
ATTTGATGAAAAATTTGAAGGCGTGCTACTGGCTTATGAGGCCAAAATTATTGATAAAAGTGCCAAAATTCTATCTGGAGTTCATCCCTATTTTGGCGTGACGATTAAGG
CAAAGCTATTACTTTTCTCTCCAAAACCAAACATGCTTTTAGAGGGAAAGGTGGTGAAGCTTAGGCAAGAATCCATACATGTTATTGTCTTAGGTTTTGCATCTGCTGTA
ATAACCGATGAAGACATTCGTGATGAATTCAAGCATAGAACAAAACATGGGGAAGAAATGTTTGTCAGCAGAGCTCATAAAAACCATGTGATAAAGGTTGGGACAATGAT
ACGATTTTTGGTGAAGAGTTTTGATGAGGAAATATTGCATATCTCTGGATCTCTGGTTCCATCTCACACAGGGAGCATCCATTGGTTGGAGAAGAATTCAATTGAAGGTT
CAGAAAGTAATAGGAGTAAAAAGAAGATGAGAGATAACGAAGGAGAATCGTTGTTGCAGGACAGTGTTGCCACTGATGGTATGGGGTGCTCTGTCCAAATCAACCCGCTG
CTGGATGAGATGAATTACAAGAGAGAAGAATCGGTTCTCAGAAATGGGTTTTCCAAGTTGTTGAACCGGGTTCATTCCAACCAAATCCCATGTGAATATGCGATCTATGG
CATTTGTTTAATCAGATAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MEGLKVSDANMVIYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAV
ITDEDIRDEFKHRTKHGEEMFVSRAHKNHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNSIEGSESNRSKKKMRDNEGESLLQDSVATDGMGCSVQINPL
LDEMNYKREESVLRNGFSKLLNRVHSNQIPCEYAIYGICLIR

Lag0036799 (gene) of Sponge gourd (AG-4) v1 genome