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Lag0036842 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036842
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr2:1580229..1580576
RNA-Seq ExpressionLag0036842
SyntenyLag0036842
Gene Ontology termsGO:0034641 - cellular nitrogen compound metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0044249 - cellular biosynthetic process (biological process)
GO:0044260 - cellular macromolecule metabolic process (biological process)
GO:1901576 - organic substance biosynthetic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038880370.1 uncharacterized protein LOC120072018 [Benincasa hispida]6.1e-2857.41Show/hide
Query:  MVVARFDIDKFDGKGDFDLWKAKIKAILGQQKALHALTDPSKLPATVTEGDLETMNMTAYGTIILNLSNSVLRQVIDEETPQKIWKKLNELYEVKDAHNK
        M   R++I+KFDGK DF+L KAKIKA+LGQQK L A+TDP+K P T++E D ET+ + AYGTIILN+++S+LRQ++D+ T   +W KLNE+Y  KD  NK
Subjt:  MVVARFDIDKFDGKGDFDLWKAKIKAILGQQKALHALTDPSKLPATVTEGDLETMNMTAYGTIILNLSNSVLRQVIDEETPQKIWKKLNELYEVKDAHNK

Query:  MYMREKFF
         + RE+FF
Subjt:  MYMREKFF

XP_038887098.1 uncharacterized protein LOC120077280 [Benincasa hispida]2.0e-2657.41Show/hide
Query:  MVVARFDIDKFDGKGDFDLWKAKIKAILGQQKALHALTDPSKLPATVTEGDLETMNMTAYGTIILNLSNSVLRQVIDEETPQKIWKKLNELYEVKDAHNK
        M   +++I+KFD K DF+L KAKIKA+LGQQKAL A+TDPSK P T++E + ET+   AYGTIILN+++SVLRQ++D+ T   +W KLNE+Y  KD  NK
Subjt:  MVVARFDIDKFDGKGDFDLWKAKIKAILGQQKALHALTDPSKLPATVTEGDLETMNMTAYGTIILNLSNSVLRQVIDEETPQKIWKKLNELYEVKDAHNK

Query:  MYMREKFF
         ++RE+FF
Subjt:  MYMREKFF

XP_038889301.1 uncharacterized protein LOC120079211 [Benincasa hispida]1.7e-2554.63Show/hide
Query:  MVVARFDIDKFDGKGDFDLWKAKIKAILGQQKALHALTDPSKLPATVTEGDLETMNMTAYGTIILNLSNSVLRQVIDEETPQKIWKKLNELYEVKDAHNK
        M   R++I+KFDGK +FDLWKAKIK +LGQQKAL A+T+P+K P T+T+ + +T+ + AYGTI+LN+ +SVLRQ++D+ T   ++ KLNE Y  KD  NK
Subjt:  MVVARFDIDKFDGKGDFDLWKAKIKAILGQQKALHALTDPSKLPATVTEGDLETMNMTAYGTIILNLSNSVLRQVIDEETPQKIWKKLNELYEVKDAHNK

Query:  MYMREKFF
          +RE FF
Subjt:  MYMREKFF

XP_038889933.1 uncharacterized protein LOC120079695 [Benincasa hispida]1.5e-2655.56Show/hide
Query:  MVVARFDIDKFDGKGDFDLWKAKIKAILGQQKALHALTDPSKLPATVTEGDLETMNMTAYGTIILNLSNSVLRQVIDEETPQKIWKKLNELYEVKDAHNK
        M   RF+I+KFDGK DF+LWKAKIKA+LGQQKAL A+TD +K P T T+ + E + + AYGTI+LN++++VLRQ++D +T   +W KLNE+Y  KD  NK
Subjt:  MVVARFDIDKFDGKGDFDLWKAKIKAILGQQKALHALTDPSKLPATVTEGDLETMNMTAYGTIILNLSNSVLRQVIDEETPQKIWKKLNELYEVKDAHNK

Query:  MYMREKFF
         + R++FF
Subjt:  MYMREKFF

XP_038890043.1 uncharacterized protein LOC120079747 [Benincasa hispida]4.0e-2755.56Show/hide
Query:  MVVARFDIDKFDGKGDFDLWKAKIKAILGQQKALHALTDPSKLPATVTEGDLETMNMTAYGTIILNLSNSVLRQVIDEETPQKIWKKLNELYEVKDAHNK
        M   R++I+KFD K DF+LWK KIK +LGQQKAL A+TDP+K P T+TE + ET+ + A GTI+LN++++VLRQVI++ T   +W KLNE+Y  KD  NK
Subjt:  MVVARFDIDKFDGKGDFDLWKAKIKAILGQQKALHALTDPSKLPATVTEGDLETMNMTAYGTIILNLSNSVLRQVIDEETPQKIWKKLNELYEVKDAHNK

Query:  MYMREKFF
         ++RE+FF
Subjt:  MYMREKFF

TrEMBL top hitse value%identityAlignment
A0A5A7U6R2 Retrovirus-related Pol polyprotein from transposon TNT 1-948.1e-2654.63Show/hide
Query:  MVVARFDIDKFDGKGDFDLWKAKIKAILGQQKALHALTDPSKLPATVTEGDLETMNMTAYGTIILNLSNSVLRQVIDEETPQKIWKKLNELYEVKDAHNK
        M   +F+I+KFDG GDF LW  +I AILG QKAL AL DP +LPAT+T+ + ET+   AY T+I+N++++VLRQVI+E T    W+KL  LYE KD  NK
Subjt:  MVVARFDIDKFDGKGDFDLWKAKIKAILGQQKALHALTDPSKLPATVTEGDLETMNMTAYGTIILNLSNSVLRQVIDEETPQKIWKKLNELYEVKDAHNK

Query:  MYMREKFF
        M+++EK F
Subjt:  MYMREKFF

A0A5A7UZ07 Retrotransposon protein, putative, Ty1-copia subclass1.7e-2352.78Show/hide
Query:  MVVARFDIDKFDGKGDFDLWKAKIKAILGQQKALHALTDPSKLPATVTEGDLETMNMTAYGTIILNLSNSVLRQVIDEETPQKIWKKLNELYEVKDAHNK
        M   +F+I+KFDG GDF L   +I AILG QKAL AL DP +L AT+T+ + ET+   AYGT+I+N++ +VLRQ+I+E T    W+KL  LYE KD  NK
Subjt:  MVVARFDIDKFDGKGDFDLWKAKIKAILGQQKALHALTDPSKLPATVTEGDLETMNMTAYGTIILNLSNSVLRQVIDEETPQKIWKKLNELYEVKDAHNK

Query:  MYMREKFF
        M++R+K F
Subjt:  MYMREKFF

A0A5C7HB65 gag_pre-integrs domain-containing protein7.1e-2251.92Show/hide
Query:  RFDIDKFDGKGDFDLWKAKIKAILGQQKALHALTDPSKLPATVTEGDLETMNMTAYGTIILNLSNSVLRQVIDEETPQKIWKKLNELYEVKDAHNKMYMR
        +FDIDKFDG GDF +W+ K+KA+L QQK L A+  P KLP ++T    + M   A GTIILNLS++VLR++ DE+T   +WKKL  LY  K   NK+Y++
Subjt:  RFDIDKFDGKGDFDLWKAKIKAILGQQKALHALTDPSKLPATVTEGDLETMNMTAYGTIILNLSNSVLRQVIDEETPQKIWKKLNELYEVKDAHNKMYMR

Query:  EKFF
        E+ F
Subjt:  EKFF

A0A5D3BQH4 Transcription initiation factor TFIID subunit 2-like1.4e-2259.78Show/hide
Query:  MVVARFDIDKFDGKGDFDLWKAKIKAILGQQKALHALTDPSKLPATVTEGDLETMNMTAYGTIILNLSNSVLRQVIDEETPQKIWKKLNELY
        M V R+DI+KFDGKG F LWKAK+KAI+GQ+K L A+ DP KLP  +T+ + ETM   AYG I+LNLS++VLR+VI +ET   +W+KL ELY
Subjt:  MVVARFDIDKFDGKGDFDLWKAKIKAILGQQKALHALTDPSKLPATVTEGDLETMNMTAYGTIILNLSNSVLRQVIDEETPQKIWKKLNELY

A0A5D3DVM0 Retrovirus-related Pol polyprotein from transposon TNT 1-944.9e-2352.78Show/hide
Query:  MVVARFDIDKFDGKGDFDLWKAKIKAILGQQKALHALTDPSKLPATVTEGDLETMNMTAYGTIILNLSNSVLRQVIDEETPQKIWKKLNELYEVKDAHNK
        M   +F+I+KFDG GDF L   +I A LG QKAL AL DP +LPAT+T+ + ET+   AY T+I+N++++VLRQVI+E T    W+ L  LYE KD  NK
Subjt:  MVVARFDIDKFDGKGDFDLWKAKIKAILGQQKALHALTDPSKLPATVTEGDLETMNMTAYGTIILNLSNSVLRQVIDEETPQKIWKKLNELYEVKDAHNK

Query:  MYMREKFF
        M++REK F
Subjt:  MYMREKFF

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-947.1e-1131.53Show/hide
Query:  RFDIDKFDGKGDFDLWKAKIKAILGQQKALHALTDPSKLPATVTEGDLETMNMTAYGTIILNLSNSVLRQVIDEETPQKIWKKLNELYEVKDAHNKMYMR
        ++++ KF+G   F  W+ +++ +L QQ     L   SK P T+   D   ++  A   I L+LS+ V+  +IDE+T + IW +L  LY  K   NK+Y++
Subjt:  RFDIDKFDGKGDFDLWKAKIKAILGQQKALHALTDPSKLPATVTEGDLETMNMTAYGTIILNLSNSVLRQVIDEETPQKIWKKLNELYEVKDAHNKMYMR

Query:  EKFFYLQDGSG
        ++ + L    G
Subjt:  EKFFYLQDGSG

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGTGGCAAGGTTTGATATTGACAAATTTGATGGGAAAGGAGACTTTGATCTCTGGAAGGCAAAGATAAAGGCAATCCTTGGACAACAGAAAGCCTTACATGCCCT
AACTGACCCGTCAAAGCTACCTGCCACAGTAACTGAAGGAGATCTTGAAACTATGAATATGACAGCTTATGGGACGATTATTCTGAATCTCAGCAACAGTGTCTTAAGAC
AAGTGATTGATGAAGAAACTCCTCAAAAGATATGGAAGAAGCTCAACGAATTGTATGAGGTAAAAGATGCTCATAATAAGATGTATATGAGAGAGAAGTTTTTTTACCTT
CAAGATGGATCCGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGTGGCAAGGTTTGATATTGACAAATTTGATGGGAAAGGAGACTTTGATCTCTGGAAGGCAAAGATAAAGGCAATCCTTGGACAACAGAAAGCCTTACATGCCCT
AACTGACCCGTCAAAGCTACCTGCCACAGTAACTGAAGGAGATCTTGAAACTATGAATATGACAGCTTATGGGACGATTATTCTGAATCTCAGCAACAGTGTCTTAAGAC
AAGTGATTGATGAAGAAACTCCTCAAAAGATATGGAAGAAGCTCAACGAATTGTATGAGGTAAAAGATGCTCATAATAAGATGTATATGAGAGAGAAGTTTTTTTACCTT
CAAGATGGATCCGGCTAA
Protein sequenceShow/hide protein sequence
MVVARFDIDKFDGKGDFDLWKAKIKAILGQQKALHALTDPSKLPATVTEGDLETMNMTAYGTIILNLSNSVLRQVIDEETPQKIWKKLNELYEVKDAHNKMYMREKFFYL
QDGSG