; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0036880 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036880
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptiontRNA-processing ribonuclease BN
Genome locationchr2:1841585..1847389
RNA-Seq ExpressionLag0036880
SyntenyLag0036880
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051699.1 uncharacterized protein E6C27_scaffold60G00840 [Cucumis melo var. makuwa]7.5e-1656.99Show/hide
Query:  VLGFPRHCSDYRMVVLAFIKCNWKVELD-RGDKDYIL--HLRRNVYRLYQLTKAAHFMERLMFQMRGLPTTPDLLEKSGALFAMMITFQVLGV
        ++G P   + +  +V   ++  ++  LD RG   + L   +   VYRLYQLTKAAHFME LMFQMRGLPT+P+LLEKSGALFAMMITFQ+LGV
Subjt:  VLGFPRHCSDYRMVVLAFIKCNWKVELD-RGDKDYIL--HLRRNVYRLYQLTKAAHFMERLMFQMRGLPTTPDLLEKSGALFAMMITFQVLGV
TYK31605.1 TRNA-processing ribonuclease BN [Cucumis melo var. makuwa]2.6e-1656.52Show/hide
Query:  VLGFPRHCSDYRMVVLAFIKCNWKVELD-RGDKDY-ILHLRRNVYRLYQLTKAAHFMERLMFQMRGLPTTPDLLEKSGALFAMMITFQVLGV
        ++G P   + +  +V   ++  ++  LD RG   + ++ +   VYRLYQLTKAAHFME LMFQMRGLPT+P+LLEKSGALFAMMITFQ+LGV
Subjt:  VLGFPRHCSDYRMVVLAFIKCNWKVELD-RGDKDY-ILHLRRNVYRLYQLTKAAHFMERLMFQMRGLPTTPDLLEKSGALFAMMITFQVLGV
XP_008466634.1 PREDICTED: uncharacterized protein LOC103503989 [Cucumis melo]2.6e-1656.52Show/hide
Query:  VLGFPRHCSDYRMVVLAFIKCNWKVELD-RGDKDY-ILHLRRNVYRLYQLTKAAHFMERLMFQMRGLPTTPDLLEKSGALFAMMITFQVLGV
        ++G P   + +  +V   ++  ++  LD RG   + ++ +   VYRLYQLTKAAHFME LMFQMRGLPT+P+LLEKSGALFAMMITFQ+LGV
Subjt:  VLGFPRHCSDYRMVVLAFIKCNWKVELD-RGDKDY-ILHLRRNVYRLYQLTKAAHFMERLMFQMRGLPTTPDLLEKSGALFAMMITFQVLGV
XP_022138611.1 uncharacterized protein LOC111009450 [Momordica charantia]1.2e-1657.61Show/hide
Query:  VLGFPRHCSDYRMVVLAFIKCNWKVELD-RGDKDY-ILHLRRNVYRLYQLTKAAHFMERLMFQMRGLPTTPDLLEKSGALFAMMITFQVLGV
        ++G P   +    +V   ++  ++  LD RG   + ++ +   VYRLYQLTKAAHFMERL+FQMRGLPTTP+LLEKSGALFAMM+TFQVLGV
Subjt:  VLGFPRHCSDYRMVVLAFIKCNWKVELD-RGDKDY-ILHLRRNVYRLYQLTKAAHFMERLMFQMRGLPTTPDLLEKSGALFAMMITFQVLGV
XP_038905249.1 uncharacterized protein LOC120091332 [Benincasa hispida]4.7e-1860.87Show/hide
Query:  VLGFPRHCSDYRMVVLAFIKCNWKVELD-RGDKDY-ILHLRRNVYRLYQLTKAAHFMERLMFQMRGLPTTPDLLEKSGALFAMMITFQVLGV
        ++G P   + +  +V   ++  ++  LD RG   + ++ +   VYRLYQLTKAAHFMERLMFQMRGLPTTPDLLEKSGALFAMMITFQVLGV
Subjt:  VLGFPRHCSDYRMVVLAFIKCNWKVELD-RGDKDY-ILHLRRNVYRLYQLTKAAHFMERLMFQMRGLPTTPDLLEKSGALFAMMITFQVLGV
TrEMBL top hitse value%identityAlignment
A0A1S3CRR4 uncharacterized protein LOC1035039891.3e-1656.52Show/hide
Query:  VLGFPRHCSDYRMVVLAFIKCNWKVELD-RGDKDY-ILHLRRNVYRLYQLTKAAHFMERLMFQMRGLPTTPDLLEKSGALFAMMITFQVLGV
        ++G P   + +  +V   ++  ++  LD RG   + ++ +   VYRLYQLTKAAHFME LMFQMRGLPT+P+LLEKSGALFAMMITFQ+LGV
Subjt:  VLGFPRHCSDYRMVVLAFIKCNWKVELD-RGDKDY-ILHLRRNVYRLYQLTKAAHFMERLMFQMRGLPTTPDLLEKSGALFAMMITFQVLGV
A0A5A7UDY4 Uncharacterized protein3.6e-1656.99Show/hide
Query:  VLGFPRHCSDYRMVVLAFIKCNWKVELD-RGDKDYIL--HLRRNVYRLYQLTKAAHFMERLMFQMRGLPTTPDLLEKSGALFAMMITFQVLGV
        ++G P   + +  +V   ++  ++  LD RG   + L   +   VYRLYQLTKAAHFME LMFQMRGLPT+P+LLEKSGALFAMMITFQ+LGV
Subjt:  VLGFPRHCSDYRMVVLAFIKCNWKVELD-RGDKDYIL--HLRRNVYRLYQLTKAAHFMERLMFQMRGLPTTPDLLEKSGALFAMMITFQVLGV
A0A5D3E8K1 tRNA-processing ribonuclease BN1.3e-1656.52Show/hide
Query:  VLGFPRHCSDYRMVVLAFIKCNWKVELD-RGDKDY-ILHLRRNVYRLYQLTKAAHFMERLMFQMRGLPTTPDLLEKSGALFAMMITFQVLGV
        ++G P   + +  +V   ++  ++  LD RG   + ++ +   VYRLYQLTKAAHFME LMFQMRGLPT+P+LLEKSGALFAMMITFQ+LGV
Subjt:  VLGFPRHCSDYRMVVLAFIKCNWKVELD-RGDKDY-ILHLRRNVYRLYQLTKAAHFMERLMFQMRGLPTTPDLLEKSGALFAMMITFQVLGV
A0A6J1CA74 uncharacterized protein LOC1110094505.6e-1757.61Show/hide
Query:  VLGFPRHCSDYRMVVLAFIKCNWKVELD-RGDKDY-ILHLRRNVYRLYQLTKAAHFMERLMFQMRGLPTTPDLLEKSGALFAMMITFQVLGV
        ++G P   +    +V   ++  ++  LD RG   + ++ +   VYRLYQLTKAAHFMERL+FQMRGLPTTP+LLEKSGALFAMM+TFQVLGV
Subjt:  VLGFPRHCSDYRMVVLAFIKCNWKVELD-RGDKDY-ILHLRRNVYRLYQLTKAAHFMERLMFQMRGLPTTPDLLEKSGALFAMMITFQVLGV
A0A6J1IHP8 uncharacterized protein LOC1114736673.1e-1554.35Show/hide
Query:  VLGFPRHCSDYRMVVLAFIKCNWKVELD-RGDKDY-ILHLRRNVYRLYQLTKAAHFMERLMFQMRGLPTTPDLLEKSGALFAMMITFQVLGV
        ++G P   + +  +V   ++  ++  LD RG   + ++ +   VYRLYQLTKA+H MERLMFQMRGLP TP+LLEKSGA+F+MMITFQVLGV
Subjt:  VLGFPRHCSDYRMVVLAFIKCNWKVELD-RGDKDY-ILHLRRNVYRLYQLTKAAHFMERLMFQMRGLPTTPDLLEKSGALFAMMITFQVLGV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G48460.1 unknown protein2.0e-0648.98Show/hide
Query:  VYRLYQLTKAAHFMERLMFQMRGLPTTPDLLEKSGALFAMMITFQVLGV
        VYRLYQ+T+AA F++RLMF M+   TT ++ E+  AL  +++T Q L V
Subjt:  VYRLYQLTKAAHFMERLMFQMRGLPTTPDLLEKSGALFAMMITFQVLGV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCCATTCCGATTTCTTTATGGTACGATGGTGTGTGGGATAGTTGCTATCAATACACTGGATTCAAGACGTCAACAATGTGCGTAGATTCTAATTGTACATTCGA
ACAACTCGTCAATTGCATTGATAGTAAGCTCTCATCTCATAATAGTGGGAAAATTCACTGTATCTCTTTGTACAACAACATCTCTGGTAAGCCACTGTACTTAGGCTTTG
TGAGGATAGAGACGTTGCCTGATTCGCATTTTTTCTTCCTCGTTTTCGCCGATGAAGCAGAATTGGAGAACAGGAGGAACCTAATCTGCTTTCCTTTGGTCGATTCTGAT
CAAATGCTTTATCACAAGTGCGGCGATGATGAGAATACATACTCTGGTTTAATTGAAACTGAGATTGTTTCCGTGATTATTTCTCAAGCACTTTTGAGCCGTTTCACGCT
TCTTGAAATTCCCTTTCTGTCTCAATTATCTTCTGCACGATGCACCCCGGGCTACTCTGATTATCTCCATGACGGTGATAGCCCCATTGCTCGTGCTAGAGTGTCGCCGT
TTAGTGTTGCAGTGATTATTAAACTTCAGCTTATAATGCCAGTTCTGCTTCAGAATTTGATGATTGATAAAGCTGTTACAAATGATCTGAGCCTTCAACTTTACAGCTTG
TTTAAGACTTTGTGGAGCCAAGTCCCTGTTTCAGGGAGAACCTACTTGATGGCAACTCCCTTTGGTGTGTTTGATCAGAATCTGAAGCCCGGAAATCAGAAGATTGGCAG
TCGCAATCGTTCTGTCTTGGGCTTCCCTCGGCATTGCTCGGATTACAGGATGGTCGTGCTCGCTTTCATCAAATGCAATTGGAAAGTCGAGTTGGACAGAGGAGACAAGG
ATTACATTTTGCATTTGCGTCGAAATGTTTATAGACTTTATCAGCTAACAAAAGCTGCACATTTTATGGAGAGGTTGATGTTCCAAATGAGAGGGCTTCCCACCACTCCG
GACTTGTTGGAAAAAAGTGGAGCTCTTTTTGCTATGATGATAACCTTTCAAGTTCTAGGGGTGGAGTTTGTTCTAATCTTTGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCCATTCCGATTTCTTTATGGTACGATGGTGTGTGGGATAGTTGCTATCAATACACTGGATTCAAGACGTCAACAATGTGCGTAGATTCTAATTGTACATTCGA
ACAACTCGTCAATTGCATTGATAGTAAGCTCTCATCTCATAATAGTGGGAAAATTCACTGTATCTCTTTGTACAACAACATCTCTGGTAAGCCACTGTACTTAGGCTTTG
TGAGGATAGAGACGTTGCCTGATTCGCATTTTTTCTTCCTCGTTTTCGCCGATGAAGCAGAATTGGAGAACAGGAGGAACCTAATCTGCTTTCCTTTGGTCGATTCTGAT
CAAATGCTTTATCACAAGTGCGGCGATGATGAGAATACATACTCTGGTTTAATTGAAACTGAGATTGTTTCCGTGATTATTTCTCAAGCACTTTTGAGCCGTTTCACGCT
TCTTGAAATTCCCTTTCTGTCTCAATTATCTTCTGCACGATGCACCCCGGGCTACTCTGATTATCTCCATGACGGTGATAGCCCCATTGCTCGTGCTAGAGTGTCGCCGT
TTAGTGTTGCAGTGATTATTAAACTTCAGCTTATAATGCCAGTTCTGCTTCAGAATTTGATGATTGATAAAGCTGTTACAAATGATCTGAGCCTTCAACTTTACAGCTTG
TTTAAGACTTTGTGGAGCCAAGTCCCTGTTTCAGGGAGAACCTACTTGATGGCAACTCCCTTTGGTGTGTTTGATCAGAATCTGAAGCCCGGAAATCAGAAGATTGGCAG
TCGCAATCGTTCTGTCTTGGGCTTCCCTCGGCATTGCTCGGATTACAGGATGGTCGTGCTCGCTTTCATCAAATGCAATTGGAAAGTCGAGTTGGACAGAGGAGACAAGG
ATTACATTTTGCATTTGCGTCGAAATGTTTATAGACTTTATCAGCTAACAAAAGCTGCACATTTTATGGAGAGGTTGATGTTCCAAATGAGAGGGCTTCCCACCACTCCG
GACTTGTTGGAAAAAAGTGGAGCTCTTTTTGCTATGATGATAACCTTTCAAGTTCTAGGGGTGGAGTTTGTTCTAATCTTTGGTTAG
Protein sequenceShow/hide protein sequence
MSSIPISLWYDGVWDSCYQYTGFKTSTMCVDSNCTFEQLVNCIDSKLSSHNSGKIHCISLYNNISGKPLYLGFVRIETLPDSHFFFLVFADEAELENRRNLICFPLVDSD
QMLYHKCGDDENTYSGLIETEIVSVIISQALLSRFTLLEIPFLSQLSSARCTPGYSDYLHDGDSPIARARVSPFSVAVIIKLQLIMPVLLQNLMIDKAVTNDLSLQLYSL
FKTLWSQVPVSGRTYLMATPFGVFDQNLKPGNQKIGSRNRSVLGFPRHCSDYRMVVLAFIKCNWKVELDRGDKDYILHLRRNVYRLYQLTKAAHFMERLMFQMRGLPTTP
DLLEKSGALFAMMITFQVLGVEFVLIFG