; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0036908 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036908
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr2:2035743..2036554
RNA-Seq ExpressionLag0036908
SyntenyLag0036908
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ABA98898.1 retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]1.1e-1025Show/hide
Query:  VTCWTIWTDRNKLIHDEAIPPIEVRSKWITEYLTKFLEAKSKSPVGISANR--------RNDPGAAIVLWSPPPNGVWKFNVDAAWSPCLPATGIGVIGR
        ++ W IW  RN++ HD+A PP+EV  +++  Y+    E K++    + + +        +    + +  W  PP+G  K NVD ++              
Subjt:  VTCWTIWTDRNKLIHDEAIPPIEVRSKWITEYLTKFLEAKSKSPVGISANR--------RNDPGAAIVLWSPPPNGVWKFNVDAAWSPCLPATGIGVIGR

Query:  DSAGILVGAAMHFVDSLPATGIGVIGRDSAGILVGAAMHFVDLNLEGPEAELRAIKDGLSLAMELRYTDVVVESDSLMAVKFVRKEALICGV
        D+ G                 I  I R+S G ++ AA  FV+      EAE+ A K+G+ LA++     +++ESD   A++ +  E  +  V
Subjt:  DSAGILVGAAMHFVDSLPATGIGVIGRDSAGILVGAAMHFVDLNLEGPEAELRAIKDGLSLAMELRYTDVVVESDSLMAVKFVRKEALICGV

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]5.7e-1530.15Show/hide
Query:  EIGLVAVTCWTIWTDRNKLIHDEAIPPIEVRSKWITEYLTKFLEAKSKSPVGISANRRNDPGAAIVLWSPPPNGVWKFNVDAAWSPCLPATGIGVIGRDS
        ++ L A+T W IW DRN LIH + + P+E + +W+T +L    +A+  +    S   +++    +  W P  +   K N DAA   C  A          
Subjt:  EIGLVAVTCWTIWTDRNKLIHDEAIPPIEVRSKWITEYLTKFLEAKSKSPVGISANRRNDPGAAIVLWSPPPNGVWKFNVDAAWSPCLPATGIGVIGRDS

Query:  AGILVGAAMHFVDSLPATGIGVIGRDSAGILVGAAMHFVDLNLEGPEAELRAIKDGLSLAMELRYTDVVVESDSLMAVKFVRKE---------------A
                        +T  G I RDS+  LV A    V   L    AE+R I +GL  A    +T + VESDSL+A++ +R E               A
Subjt:  AGILVGAAMHFVDSLPATGIGVIGRDSAGILVGAAMHFVDLNLEGPEAELRAIKDGLSLAMELRYTDVVVESDSLMAVKFVRKE---------------A

Query:  LICGVVWKAF---------IADILAKRAKMSKSSISS-VENFPAWLYSLVEDDL-LLFAHVA
        L C   + +F          A  LAK    S S+  + + NFP WL  LV+ D    FAHVA
Subjt:  LICGVVWKAF---------IADILAKRAKMSKSSISS-VENFPAWLYSLVEDDL-LLFAHVA

XP_022158489.1 uncharacterized protein LOC111024968 [Momordica charantia]2.9e-1132.61Show/hide
Query:  SLAEIGLVAVTCWTIWTDRNKLIHDEAIPPIEVRSKWITEYLTKFLEAKSKSPVGISANRRNDPGAAIVLWSPPPNGVWKFNVDAAWSPCLPATGIGVIG
        S +E+ L  +TCW +W DR+ LI+ + IP   ++ +WI +Y     E + K   G+   +R  P   +  W PP  GV K N DAA S     +G+GV+ 
Subjt:  SLAEIGLVAVTCWTIWTDRNKLIHDEAIPPIEVRSKWITEYLTKFLEAKSKSPVGISANRRNDPGAAIVLWSPPPNGVWKFNVDAAWSPCLPATGIGVIG

Query:  RDSAGILVGAAMHFVDSLPATGIGVIGRDSAGILVGAAMHFVDLNLEGPEAELRAIKDGLSLAMELRYTDVVVESDSLMAVKFV
        R+    +VGA + F                         H V   L    A++ AI++GLSLA  L    VVVE+DSL A+  +
Subjt:  RDSAGILVGAAMHFVDSLPATGIGVIGRDSAGILVGAAMHFVDLNLEGPEAELRAIKDGLSLAMELRYTDVVVESDSLMAVKFV

XP_023874626.1 uncharacterized protein LOC111987155 [Quercus suber]6.5e-1127.2Show/hide
Query:  AVTCWTIWTDRNKLIHDEAIPPIEVRSKWITEYLTKFLEAKSKSPVGISANRRNDPGAAIVLWSPPPNGVWKFNVDAAWSPCLPATGIGVIGRDSAGILV
        AVT W++W +RN L             K   EY+    E KS  P  +  +  + P      W PP NG +K N D A                      
Subjt:  AVTCWTIWTDRNKLIHDEAIPPIEVRSKWITEYLTKFLEAKSKSPVGISANRRNDPGAAIVLWSPPPNGVWKFNVDAAWSPCLPATGIGVIGRDSAGILV

Query:  GAAMHFVDSLPATGIGVIGRDSAGILVGAAMHFVDLNLEGPEAELRAIKDGLSLAMELRYTDVVVESDSLMAVKFVRKEALICGVVWKAF----------
                 + + GIGV+ R+  G+L+GA    +D+ L   E E RA+++G+ LA +L    +V+ESDSL  V  VR  +L    + K            
Subjt:  GAAMHFVDSLPATGIGVIGRDSAGILVGAAMHFVDLNLEGPEAELRAIKDGLSLAMELRYTDVVVESDSLMAVKFVRKEALICGVVWKAF----------

Query:  --------------IADILAKRAKMSKSSISSVENFPAWLYSLVEDDLLL
                       A ++AK AK     I  VE+ P  + +LV+ D+ L
Subjt:  --------------IADILAKRAKMSKSSISSVENFPAWLYSLVEDDLLL

XP_023880941.1 uncharacterized protein LOC111993328 [Quercus suber]6.5e-1127.75Show/hide
Query:  AVTCWTIWTDRNKLIHDEAIPPIEVRSKWITEYLTKFLEAKSKSPVGISANRRNDPGAAIVLWSPPPNGVWKFNVDAAWSPCLPATGIGVIGRDSAGILV
        AVT W++W  RN + H +        +K I +YL +  +         + N    P  ++  WSPP NG +K N D            G + +D      
Subjt:  AVTCWTIWTDRNKLIHDEAIPPIEVRSKWITEYLTKFLEAKSKSPVGISANRRNDPGAAIVLWSPPPNGVWKFNVDAAWSPCLPATGIGVIGRDSAGILV

Query:  GAAMHFVDSLPATGIGVIGRDSAGILVGAAMHFVDLNLEGPEAELRAIKDGLSLAMELRYTDVVVESDSLMAV
                 +   G+G++ R++ G+L+GA    V L L+  E+E RA+++G+ LA +L   ++ +ESDSL+ +
Subjt:  GAAMHFVDSLPATGIGVIGRDSAGILVGAAMHFVDLNLEGPEAELRAIKDGLSLAMELRYTDVVVESDSLMAV

TrEMBL top hitse value%identityAlignment
A0A6J1BQ49 uncharacterized protein LOC1110047861.2e-1027.96Show/hide
Query:  LVAVTCWTIWTDRNKLIHDEAIPPIEVRSKWITEYLTKFLEAKSKSPVGISANRRNDPGAAIVLWSPPPNGVWKFNVDAAWSPCLPATGIGVIGRDSAGI
        L A T W IW DRN   H  ++    +R  WI+ Y   + +A+    +    +    P      W PP +   K N DAA                    
Subjt:  LVAVTCWTIWTDRNKLIHDEAIPPIEVRSKWITEYLTKFLEAKSKSPVGISANRRNDPGAAIVLWSPPPNGVWKFNVDAAWSPCLPATGIGVIGRDSAGI

Query:  LVGAAMHFVDSLPATGIGVIGRDSAGILVGAAMHFVDLNLEGPEAELRAIKDGLSLAMELRYTDVVVESDSLMAVKFVRKEALICG
                     +TG+G+I RD  G+L+ A   F+ + L    AE+R I + L LA    YT +VVESD   A++ V+ +    G
Subjt:  LVGAAMHFVDSLPATGIGVIGRDSAGILVGAAMHFVDLNLEGPEAELRAIKDGLSLAMELRYTDVVVESDSLMAVKFVRKEALICG

A0A6J1DX30 uncharacterized protein LOC1110248742.8e-1530.15Show/hide
Query:  EIGLVAVTCWTIWTDRNKLIHDEAIPPIEVRSKWITEYLTKFLEAKSKSPVGISANRRNDPGAAIVLWSPPPNGVWKFNVDAAWSPCLPATGIGVIGRDS
        ++ L A+T W IW DRN LIH + + P+E + +W+T +L    +A+  +    S   +++    +  W P  +   K N DAA   C  A          
Subjt:  EIGLVAVTCWTIWTDRNKLIHDEAIPPIEVRSKWITEYLTKFLEAKSKSPVGISANRRNDPGAAIVLWSPPPNGVWKFNVDAAWSPCLPATGIGVIGRDS

Query:  AGILVGAAMHFVDSLPATGIGVIGRDSAGILVGAAMHFVDLNLEGPEAELRAIKDGLSLAMELRYTDVVVESDSLMAVKFVRKE---------------A
                        +T  G I RDS+  LV A    V   L    AE+R I +GL  A    +T + VESDSL+A++ +R E               A
Subjt:  AGILVGAAMHFVDSLPATGIGVIGRDSAGILVGAAMHFVDLNLEGPEAELRAIKDGLSLAMELRYTDVVVESDSLMAVKFVRKE---------------A

Query:  LICGVVWKAF---------IADILAKRAKMSKSSISS-VENFPAWLYSLVEDDL-LLFAHVA
        L C   + +F          A  LAK    S S+  + + NFP WL  LV+ D    FAHVA
Subjt:  LICGVVWKAF---------IADILAKRAKMSKSSISS-VENFPAWLYSLVEDDL-LLFAHVA

A0A6J1DZK3 uncharacterized protein LOC1110249681.4e-1132.61Show/hide
Query:  SLAEIGLVAVTCWTIWTDRNKLIHDEAIPPIEVRSKWITEYLTKFLEAKSKSPVGISANRRNDPGAAIVLWSPPPNGVWKFNVDAAWSPCLPATGIGVIG
        S +E+ L  +TCW +W DR+ LI+ + IP   ++ +WI +Y     E + K   G+   +R  P   +  W PP  GV K N DAA S     +G+GV+ 
Subjt:  SLAEIGLVAVTCWTIWTDRNKLIHDEAIPPIEVRSKWITEYLTKFLEAKSKSPVGISANRRNDPGAAIVLWSPPPNGVWKFNVDAAWSPCLPATGIGVIG

Query:  RDSAGILVGAAMHFVDSLPATGIGVIGRDSAGILVGAAMHFVDLNLEGPEAELRAIKDGLSLAMELRYTDVVVESDSLMAVKFV
        R+    +VGA + F                         H V   L    A++ AI++GLSLA  L    VVVE+DSL A+  +
Subjt:  RDSAGILVGAAMHFVDSLPATGIGVIGRDSAGILVGAAMHFVDLNLEGPEAELRAIKDGLSLAMELRYTDVVVESDSLMAVKFV

A0A803QHU3 Uncharacterized protein2.4e-1128.94Show/hide
Query:  EIGLVAVTCWTIWTDRNKLIHDEAIPPIEVRSKWITEYLTKFLEAKSKSPVGIS-ANRRNDPGAAIVLWSPPPNGVWKFNVDAAWSPCLPATGIGVIGRD
        E+ L+  T W+IW +RN+++H     P  V + +   YLT +  A++K  V     + +  P  A   W PP  G  K NVDAA       TGIG + RD
Subjt:  EIGLVAVTCWTIWTDRNKLIHDEAIPPIEVRSKWITEYLTKFLEAKSKSPVGIS-ANRRNDPGAAIVLWSPPPNGVWKFNVDAAWSPCLPATGIGVIGRD

Query:  SAGILVGAAMHFVDSLPATGIGVIGRDSAGILVGAAMHFVDLNLEGPEAELRAIKDGLSLAMELR--------YTDVVVESDSLMAVKFVRKEALICGVV
        SAG+ V AA+    + P  G      +     +  ++++V L L+ P A +    D L +A  +R        Y+D++++  SL++  F  +  ++    
Subjt:  SAGILVGAAMHFVDSLPATGIGVIGRDSAGILVGAAMHFVDLNLEGPEAELRAIKDGLSLAMELR--------YTDVVVESDSLMAVKFVRKEALICGVV

Query:  WKAFIADILAKRAKMSKSSISSVENFPAWLYSLVE
            +A ILAK A     + S +E+ P   YS+++
Subjt:  WKAFIADILAKRAKMSKSSISSVENFPAWLYSLVE

Q2QNX8 Retrotransposon protein, putative, unclassified5.4e-1125Show/hide
Query:  VTCWTIWTDRNKLIHDEAIPPIEVRSKWITEYLTKFLEAKSKSPVGISANR--------RNDPGAAIVLWSPPPNGVWKFNVDAAWSPCLPATGIGVIGR
        ++ W IW  RN++ HD+A PP+EV  +++  Y+    E K++    + + +        +    + +  W  PP+G  K NVD ++              
Subjt:  VTCWTIWTDRNKLIHDEAIPPIEVRSKWITEYLTKFLEAKSKSPVGISANR--------RNDPGAAIVLWSPPPNGVWKFNVDAAWSPCLPATGIGVIGR

Query:  DSAGILVGAAMHFVDSLPATGIGVIGRDSAGILVGAAMHFVDLNLEGPEAELRAIKDGLSLAMELRYTDVVVESDSLMAVKFVRKEALICGV
        D+ G                 I  I R+S G ++ AA  FV+      EAE+ A K+G+ LA++     +++ESD   A++ +  E  +  V
Subjt:  DSAGILVGAAMHFVDSLPATGIGVIGRDSAGILVGAAMHFVDLNLEGPEAELRAIKDGLSLAMELRYTDVVVESDSLMAVKFVRKEALICGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTGAGTTGTTCGTTAGCGGAGATTGGTTTGGTAGCGGTGACGTGCTGGACTATCTGGACAGATAGGAATAAACTGATTCATGATGAAGCTATTCCTCCGATTGA
AGTTAGAAGCAAATGGATAACTGAGTACCTGACAAAATTTCTGGAAGCGAAGTCGAAATCCCCTGTCGGCATCTCGGCTAACCGGAGAAATGACCCTGGTGCAGCTATCG
TCCTCTGGTCTCCTCCTCCAAATGGTGTCTGGAAATTTAACGTCGATGCTGCCTGGTCTCCTTGTCTTCCGGCCACTGGAATTGGAGTGATCGGTAGAGATTCGGCAGGA
ATCCTTGTTGGGGCGGCCATGCATTTTGTAGATTCTCTTCCGGCCACTGGAATTGGAGTGATCGGTAGAGATTCGGCAGGAATCCTTGTTGGGGCGGCCATGCATTTTGT
AGATCTGAATTTGGAAGGGCCGGAAGCTGAACTGAGAGCAATCAAAGATGGTCTCTCTCTAGCCATGGAGCTAAGATATACTGATGTGGTTGTGGAATCTGATTCATTGA
TGGCGGTGAAATTTGTGAGGAAAGAAGCGCTGATATGTGGAGTAGTTTGGAAAGCCTTTATAGCTGATATCCTTGCTAAGAGAGCTAAAATGTCTAAATCTAGCATATCC
TCAGTTGAGAATTTCCCAGCTTGGTTGTATTCTTTGGTCGAGGATGACCTTCTTCTCTTTGCCCATGTGGCGTTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGTGAGTTGTTCGTTAGCGGAGATTGGTTTGGTAGCGGTGACGTGCTGGACTATCTGGACAGATAGGAATAAACTGATTCATGATGAAGCTATTCCTCCGATTGA
AGTTAGAAGCAAATGGATAACTGAGTACCTGACAAAATTTCTGGAAGCGAAGTCGAAATCCCCTGTCGGCATCTCGGCTAACCGGAGAAATGACCCTGGTGCAGCTATCG
TCCTCTGGTCTCCTCCTCCAAATGGTGTCTGGAAATTTAACGTCGATGCTGCCTGGTCTCCTTGTCTTCCGGCCACTGGAATTGGAGTGATCGGTAGAGATTCGGCAGGA
ATCCTTGTTGGGGCGGCCATGCATTTTGTAGATTCTCTTCCGGCCACTGGAATTGGAGTGATCGGTAGAGATTCGGCAGGAATCCTTGTTGGGGCGGCCATGCATTTTGT
AGATCTGAATTTGGAAGGGCCGGAAGCTGAACTGAGAGCAATCAAAGATGGTCTCTCTCTAGCCATGGAGCTAAGATATACTGATGTGGTTGTGGAATCTGATTCATTGA
TGGCGGTGAAATTTGTGAGGAAAGAAGCGCTGATATGTGGAGTAGTTTGGAAAGCCTTTATAGCTGATATCCTTGCTAAGAGAGCTAAAATGTCTAAATCTAGCATATCC
TCAGTTGAGAATTTCCCAGCTTGGTTGTATTCTTTGGTCGAGGATGACCTTCTTCTCTTTGCCCATGTGGCGTTATAA
Protein sequenceShow/hide protein sequence
MGVSCSLAEIGLVAVTCWTIWTDRNKLIHDEAIPPIEVRSKWITEYLTKFLEAKSKSPVGISANRRNDPGAAIVLWSPPPNGVWKFNVDAAWSPCLPATGIGVIGRDSAG
ILVGAAMHFVDSLPATGIGVIGRDSAGILVGAAMHFVDLNLEGPEAELRAIKDGLSLAMELRYTDVVVESDSLMAVKFVRKEALICGVVWKAFIADILAKRAKMSKSSIS
SVENFPAWLYSLVEDDLLLFAHVAL