; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0036964 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0036964
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr2:2432989..2433531
RNA-Seq ExpressionLag0036964
SyntenyLag0036964
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039770.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]8.7e-2935.63Show/hide
Query:  KGESVLNNLWQASLPKRCKFFLWTMMHRKLSTSDRLQKKFRGSALNPNICFLCRRNSETLDHLFVHCNWASSIRNRFNFNAGIQAPCPPSIDYLCSAAFE
        + ++   NLW+ S+PK+C FF+WT+++  ++T+++L K+       P+ C +C+RN E   HLF+ C  A SI    + +      C  S   LC     
Subjt:  KGESVLNNLWQASLPKRCKFFLWTMMHRKLSTSDRLQKKFRGSALNPNICFLCRRNSETLDHLFVHCNWASSIRNRFNFNAGIQAPCPPSIDYLCSAAFE

Query:  VRAKTQRDIFCRNFFAASLWILWKERNARVFQGTSRTIGQIWEDSISYAALWSTNSKAFANYVVATIALNWVSF
         + KT++++   N +A++LW +W ERNAR+F G  +T+ +IWED  + A LW++ S  F+NY  ++IALN  +F
Subjt:  VRAKTQRDIFCRNFFAASLWILWKERNARVFQGTSRTIGQIWEDSISYAALWSTNSKAFANYVVATIALNWVSF

KAA0040037.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.9e-2935.63Show/hide
Query:  KGESVLNNLWQASLPKRCKFFLWTMMHRKLSTSDRLQKKFRGSALNPNICFLCRRNSETLDHLFVHCNWASSIRNRFNFNAGIQAPCPPSIDYLCSAAFE
        + ++   NLW+ S+PK+C FF+WT+++  ++T+++L K+       P+ C +C+RN E   HLF+ C  A SI    + +      C    D LC     
Subjt:  KGESVLNNLWQASLPKRCKFFLWTMMHRKLSTSDRLQKKFRGSALNPNICFLCRRNSETLDHLFVHCNWASSIRNRFNFNAGIQAPCPPSIDYLCSAAFE

Query:  VRAKTQRDIFCRNFFAASLWILWKERNARVFQGTSRTIGQIWEDSISYAALWSTNSKAFANYVVATIALNWVSF
         + KT++++   N +A++LW +W ERNAR+F G  +T+ +IWED  + A LW++ S  F+NY  ++IALN  +F
Subjt:  VRAKTQRDIFCRNFFAASLWILWKERNARVFQGTSRTIGQIWEDSISYAALWSTNSKAFANYVVATIALNWVSF

TYK10356.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.3e-2936.72Show/hide
Query:  LLTKGESVLNNLWQASLPKRCKFFLWTMMHRKLSTSDRLQKKFRGSALNPNICFLCRRNSETLDHLFVHCNWASSIRNRFNFNAGIQAPCPPSIDYLCSA
        L  + ++   NLW++S+PK+CKFF+WT+++  ++T+D+L K+       P+ C +C+RN E   HLF+ C  A SI N  + +      C    D LC  
Subjt:  LLTKGESVLNNLWQASLPKRCKFFLWTMMHRKLSTSDRLQKKFRGSALNPNICFLCRRNSETLDHLFVHCNWASSIRNRFNFNAGIQAPCPPSIDYLCSA

Query:  AFEVRAKTQRDIFCRNFFAASLWILWKERNARVFQGTSRTIGQIWEDSISYAALWSTNSKAFANYVVATIALNWVSF
            + KT+++I   N +A++LW +W ERNAR+F G  +T+  +WED  + A LW++    F NY   +IALN  +F
Subjt:  AFEVRAKTQRDIFCRNFFAASLWILWKERNARVFQGTSRTIGQIWEDSISYAALWSTNSKAFANYVVATIALNWVSF

TYK13741.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]8.7e-2935.63Show/hide
Query:  KGESVLNNLWQASLPKRCKFFLWTMMHRKLSTSDRLQKKFRGSALNPNICFLCRRNSETLDHLFVHCNWASSIRNRFNFNAGIQAPCPPSIDYLCSAAFE
        + ++   NLW+ S+PK+C FF+WT+++  ++T+++L K+       P+ C +C+RN E   HLF+ C  A SI    + +      C  S   LC     
Subjt:  KGESVLNNLWQASLPKRCKFFLWTMMHRKLSTSDRLQKKFRGSALNPNICFLCRRNSETLDHLFVHCNWASSIRNRFNFNAGIQAPCPPSIDYLCSAAFE

Query:  VRAKTQRDIFCRNFFAASLWILWKERNARVFQGTSRTIGQIWEDSISYAALWSTNSKAFANYVVATIALNWVSF
         + KT++++   N +A++LW +W ERNAR+F G  +T+ +IWED  + A LW++ S  F+NY  ++IALN  +F
Subjt:  VRAKTQRDIFCRNFFAASLWILWKERNARVFQGTSRTIGQIWEDSISYAALWSTNSKAFANYVVATIALNWVSF

XP_016902461.1 PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]8.7e-2935.63Show/hide
Query:  KGESVLNNLWQASLPKRCKFFLWTMMHRKLSTSDRLQKKFRGSALNPNICFLCRRNSETLDHLFVHCNWASSIRNRFNFNAGIQAPCPPSIDYLCSAAFE
        + ++   NLW+ S+PK+C FF+WT+++  ++T+++L K+       P+ C +C+RN E   HLF+ C  A SI    + +      C  S   LC     
Subjt:  KGESVLNNLWQASLPKRCKFFLWTMMHRKLSTSDRLQKKFRGSALNPNICFLCRRNSETLDHLFVHCNWASSIRNRFNFNAGIQAPCPPSIDYLCSAAFE

Query:  VRAKTQRDIFCRNFFAASLWILWKERNARVFQGTSRTIGQIWEDSISYAALWSTNSKAFANYVVATIALNWVSF
         + KT++++   N +A++LW +W ERNAR+F G  +T+ +IWED  + A LW++ S  F+NY  ++IALN  +F
Subjt:  VRAKTQRDIFCRNFFAASLWILWKERNARVFQGTSRTIGQIWEDSISYAALWSTNSKAFANYVVATIALNWVSF

TrEMBL top hitse value%identityAlignment
A0A1S4E2K5 LINE-1 retrotransposable element ORF2 protein4.2e-2935.63Show/hide
Query:  KGESVLNNLWQASLPKRCKFFLWTMMHRKLSTSDRLQKKFRGSALNPNICFLCRRNSETLDHLFVHCNWASSIRNRFNFNAGIQAPCPPSIDYLCSAAFE
        + ++   NLW+ S+PK+C FF+WT+++  ++T+++L K+       P+ C +C+RN E   HLF+ C  A SI    + +      C  S   LC     
Subjt:  KGESVLNNLWQASLPKRCKFFLWTMMHRKLSTSDRLQKKFRGSALNPNICFLCRRNSETLDHLFVHCNWASSIRNRFNFNAGIQAPCPPSIDYLCSAAFE

Query:  VRAKTQRDIFCRNFFAASLWILWKERNARVFQGTSRTIGQIWEDSISYAALWSTNSKAFANYVVATIALNWVSF
         + KT++++   N +A++LW +W ERNAR+F G  +T+ +IWED  + A LW++ S  F+NY  ++IALN  +F
Subjt:  VRAKTQRDIFCRNFFAASLWILWKERNARVFQGTSRTIGQIWEDSISYAALWSTNSKAFANYVVATIALNWVSF

A0A5A7TES3 LINE-1 retrotransposable element ORF2 protein1.9e-2935.63Show/hide
Query:  KGESVLNNLWQASLPKRCKFFLWTMMHRKLSTSDRLQKKFRGSALNPNICFLCRRNSETLDHLFVHCNWASSIRNRFNFNAGIQAPCPPSIDYLCSAAFE
        + ++   NLW+ S+PK+C FF+WT+++  ++T+++L K+       P+ C +C+RN E   HLF+ C  A SI    + +      C    D LC     
Subjt:  KGESVLNNLWQASLPKRCKFFLWTMMHRKLSTSDRLQKKFRGSALNPNICFLCRRNSETLDHLFVHCNWASSIRNRFNFNAGIQAPCPPSIDYLCSAAFE

Query:  VRAKTQRDIFCRNFFAASLWILWKERNARVFQGTSRTIGQIWEDSISYAALWSTNSKAFANYVVATIALNWVSF
         + KT++++   N +A++LW +W ERNAR+F G  +T+ +IWED  + A LW++ S  F+NY  ++IALN  +F
Subjt:  VRAKTQRDIFCRNFFAASLWILWKERNARVFQGTSRTIGQIWEDSISYAALWSTNSKAFANYVVATIALNWVSF

A0A5D3CJ08 LINE-1 retrotransposable element ORF2 protein6.5e-3036.72Show/hide
Query:  LLTKGESVLNNLWQASLPKRCKFFLWTMMHRKLSTSDRLQKKFRGSALNPNICFLCRRNSETLDHLFVHCNWASSIRNRFNFNAGIQAPCPPSIDYLCSA
        L  + ++   NLW++S+PK+CKFF+WT+++  ++T+D+L K+       P+ C +C+RN E   HLF+ C  A SI N  + +      C    D LC  
Subjt:  LLTKGESVLNNLWQASLPKRCKFFLWTMMHRKLSTSDRLQKKFRGSALNPNICFLCRRNSETLDHLFVHCNWASSIRNRFNFNAGIQAPCPPSIDYLCSA

Query:  AFEVRAKTQRDIFCRNFFAASLWILWKERNARVFQGTSRTIGQIWEDSISYAALWSTNSKAFANYVVATIALNWVSF
            + KT+++I   N +A++LW +W ERNAR+F G  +T+  +WED  + A LW++    F NY   +IALN  +F
Subjt:  AFEVRAKTQRDIFCRNFFAASLWILWKERNARVFQGTSRTIGQIWEDSISYAALWSTNSKAFANYVVATIALNWVSF

A0A5D3CPL6 LINE-1 retrotransposable element ORF2 protein4.2e-2935.63Show/hide
Query:  KGESVLNNLWQASLPKRCKFFLWTMMHRKLSTSDRLQKKFRGSALNPNICFLCRRNSETLDHLFVHCNWASSIRNRFNFNAGIQAPCPPSIDYLCSAAFE
        + ++   NLW+ S+PK+C FF+WT+++  ++T+++L K+       P+ C +C+RN E   HLF+ C  A SI    + +      C  S   LC     
Subjt:  KGESVLNNLWQASLPKRCKFFLWTMMHRKLSTSDRLQKKFRGSALNPNICFLCRRNSETLDHLFVHCNWASSIRNRFNFNAGIQAPCPPSIDYLCSAAFE

Query:  VRAKTQRDIFCRNFFAASLWILWKERNARVFQGTSRTIGQIWEDSISYAALWSTNSKAFANYVVATIALNWVSF
         + KT++++   N +A++LW +W ERNAR+F G  +T+ +IWED  + A LW++ S  F+NY  ++IALN  +F
Subjt:  VRAKTQRDIFCRNFFAASLWILWKERNARVFQGTSRTIGQIWEDSISYAALWSTNSKAFANYVVATIALNWVSF

A0A5D3DM72 LINE-1 retrotransposable element ORF2 protein4.2e-2935.63Show/hide
Query:  KGESVLNNLWQASLPKRCKFFLWTMMHRKLSTSDRLQKKFRGSALNPNICFLCRRNSETLDHLFVHCNWASSIRNRFNFNAGIQAPCPPSIDYLCSAAFE
        + ++   NLW+ S+PK+C FF+WT+++  ++T+++L K+       P+ C +C+RN E   HLF+ C  A SI    + +      C  S   LC     
Subjt:  KGESVLNNLWQASLPKRCKFFLWTMMHRKLSTSDRLQKKFRGSALNPNICFLCRRNSETLDHLFVHCNWASSIRNRFNFNAGIQAPCPPSIDYLCSAAFE

Query:  VRAKTQRDIFCRNFFAASLWILWKERNARVFQGTSRTIGQIWEDSISYAALWSTNSKAFANYVVATIALNWVSF
         + KT++++   N +A++LW +W ERNAR+F G  +T+ +IWED  + A LW++ S  F+NY  ++IALN  +F
Subjt:  VRAKTQRDIFCRNFFAASLWILWKERNARVFQGTSRTIGQIWEDSISYAALWSTNSKAFANYVVATIALNWVSF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G02520.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein2.0e-0727.91Show/hide
Query:  WQASLPKRCKFFLWTMMHRKLSTSDRLQKKFRGSALNPNICFLCRRNSETLDHLFVHCNWASSIRNRFNFNAGIQAPC--PPSIDYLCSAAFEVRAKTQR
        ++  +PK   F  W  M  +L T DR+        + P +C  C  + ET  HLF  C +A  +   F     +  P      I +L +   +    T  
Subjt:  WQASLPKRCKFFLWTMMHRKLSTSDRLQKKFRGSALNPNICFLCRRNSETLDHLFVHCNWASSIRNRFNFNAGIQAPC--PPSIDYLCSAAFEVRAKTQR

Query:  DIFCRNFFAASLWILWKERNARVFQGTSR
            R    AS++ +WKERNAR+    SR
Subjt:  DIFCRNFFAASLWILWKERNARVFQGTSR

AT4G04650.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein2.6e-0725.36Show/hide
Query:  LWQASLPKRCKFFLWTMMHRKLSTSDRLQKKFRGSALNPNICFLCRRNSETLDHLFVHCNWASSIRNRFNFNAGIQAPCP--PSIDYLCSAAFEVRAKTQ
        +W  +   +  F  W +   +L T DRLQ    G ++ P  C LC  + ++  HLF  C ++  +   F  +  +  P      +++L S + E      
Subjt:  LWQASLPKRCKFFLWTMMHRKLSTSDRLQKKFRGSALNPNICFLCRRNSETLDHLFVHCNWASSIRNRFNFNAGIQAPCP--PSIDYLCSAAFEVRAKTQ

Query:  RDIFCRNFFAASLWILWKERNARVFQGTSRTIGQIWED
          +  R  F + ++ +W+ERN R+  G SR+   I +D
Subjt:  RDIFCRNFFAASLWILWKERNARVFQGTSRTIGQIWED

AT4G05095.1 BEST Arabidopsis thaliana protein match is: RNA-directed DNA polymerase (reverse transcriptase)-related family protein (TAIR:AT4G04650.1)4.9e-0630.43Show/hide
Query:  PNICFLCRRNSETLDHLFVHCNWASSIRNRFNFNAGIQAPCPPSIDYLC-SAAFEVRAKTQRDIFCRNFFAASLWILWKERNARVFQGTSRT
        P+ C LC  N+E  +HLF  C  + ++   F F A +    PP +   C +            +  +  F AS++ LWKERN R+    SR+
Subjt:  PNICFLCRRNSETLDHLFVHCNWASSIRNRFNFNAGIQAPCPPSIDYLC-SAAFEVRAKTQRDIFCRNFFAASLWILWKERNARVFQGTSRT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAACTTTTGACCAAAGGAGAATCTGTTCTCAACAACTTATGGCAAGCTAGCCTCCCAAAGAGGTGTAAATTCTTCCTTTGGACCATGATGCATAGAAAACTGAGTAC
ATCCGACAGGCTTCAGAAGAAATTTCGTGGCTCTGCGCTTAACCCGAATATTTGTTTTCTGTGTAGAAGAAATTCTGAAACTCTAGACCATCTCTTTGTCCACTGCAATT
GGGCTTCATCCATCCGAAATAGATTTAATTTCAATGCTGGCATCCAAGCTCCTTGCCCTCCTTCGATCGACTATCTTTGTTCAGCAGCTTTCGAGGTTAGAGCTAAAACG
CAAAGAGACATTTTTTGCCGAAATTTCTTTGCAGCCTCTCTATGGATATTATGGAAGGAGAGAAATGCTAGAGTTTTTCAGGGGACCTCTCGCACTATTGGTCAGATTTG
GGAAGATTCCATCTCTTATGCTGCTCTTTGGTCTACCAATTCAAAGGCTTTTGCAAATTATGTTGTTGCTACTATTGCTCTTAATTGGGTTTCTTTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAACTTTTGACCAAAGGAGAATCTGTTCTCAACAACTTATGGCAAGCTAGCCTCCCAAAGAGGTGTAAATTCTTCCTTTGGACCATGATGCATAGAAAACTGAGTAC
ATCCGACAGGCTTCAGAAGAAATTTCGTGGCTCTGCGCTTAACCCGAATATTTGTTTTCTGTGTAGAAGAAATTCTGAAACTCTAGACCATCTCTTTGTCCACTGCAATT
GGGCTTCATCCATCCGAAATAGATTTAATTTCAATGCTGGCATCCAAGCTCCTTGCCCTCCTTCGATCGACTATCTTTGTTCAGCAGCTTTCGAGGTTAGAGCTAAAACG
CAAAGAGACATTTTTTGCCGAAATTTCTTTGCAGCCTCTCTATGGATATTATGGAAGGAGAGAAATGCTAGAGTTTTTCAGGGGACCTCTCGCACTATTGGTCAGATTTG
GGAAGATTCCATCTCTTATGCTGCTCTTTGGTCTACCAATTCAAAGGCTTTTGCAAATTATGTTGTTGCTACTATTGCTCTTAATTGGGTTTCTTTTTTGTAA
Protein sequenceShow/hide protein sequence
MKLLTKGESVLNNLWQASLPKRCKFFLWTMMHRKLSTSDRLQKKFRGSALNPNICFLCRRNSETLDHLFVHCNWASSIRNRFNFNAGIQAPCPPSIDYLCSAAFEVRAKT
QRDIFCRNFFAASLWILWKERNARVFQGTSRTIGQIWEDSISYAALWSTNSKAFANYVVATIALNWVSFL