CuGenDBv2

Gene ID	Lag0036999
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	F-box protein GID2-like
Genome location	chr2:2719929..2720474
RNA-Seq Expression	Lag0036999
Synteny	Lag0036999
Gene Ontology terms	GO:0009740 - gibberellic acid mediated signaling pathway (biological process) GO:0009845 - seed germination (biological process) GO:0010162 - seed dormancy process (biological process) GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process) GO:0005634 - nucleus (cellular component) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR045118 - F-box only protein FBXO9/FBXO48

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6608444.1 F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia]

2.3e-82

88.95

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Query:  MKRVVPDVDGDRQMGKKLRADTQDC--GGGGAASDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV
        MKR+VPD DG+R+MGKKLR D+ DC  GGGG ASD+TGFVNLDDNLLFEVFKHVDA TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV
Subjt:  MKRVVPDVDGDRQMGKKLRADTQDC--GGGGAASDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV

Query:  VLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR
        VLALGGFRRLHSLFIWPLTKPQ + STS+SASSSS SSS WS FPAMIGSKPP RWGKDEVHLSLSLLSIRYYEKMNFSNR
Subjt:  VLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR

XP_008452610.1 PREDICTED: F-box protein GID2-like [Cucumis melo]

4.7e-83

86.84

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Query:  MKRVVPDVDGDRQMGKKLRADTQDC--GGGGAASDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV
        MKRVV D  GDR+MGKK +A+TQD   GGG   SDKTGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV
Subjt:  MKRVVPDVDGDRQMGKKLRADTQDC--GGGGAASDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV

Query:  VLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSS-------SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        VLALGGFRRLHSLFIWPLTKPQSSSS+SSS+S SS SSS       SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  VLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSS-------SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

XP_011654137.1 F-box protein GID2 [Cucumis sativus]

3.3e-84

87.37

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Query:  MKRVVPDVDGDRQMGKKLRADTQDC---GGGGAASDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
        MKRVVPD  GDR+MGKK +A+TQD    GGG   SDKTGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
Subjt:  MKRVVPDVDGDRQMGKKLRADTQDC---GGGGAASDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS

Query:  VVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASS------SSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        VVLALGGFRRLHSLFIWPLTKPQSSSS+SSS+SS      SS SS+SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  VVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASS------SSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

XP_022977120.1 F-box protein GID2-like [Cucurbita maxima]

3.6e-83

88.4

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Query:  MKRVVPDVDGDRQMGKKLRADTQDCGGGGAASDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL
        MKRVVP+  GDR+  KK RA + DC GGG  SDKTGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL
Subjt:  MKRVVPDVDGDRQMGKKLRADTQDCGGGGAASDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL

Query:  ALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        ALGGFRRLHSLFIWPLTKPQSSSS+SSS SSS+ SSS WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNF +RGR
Subjt:  ALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

XP_038900230.1 F-box protein GID2 [Benincasa hispida]

3.2e-87

91.16

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Query:  MKRVVPDVDGDRQMGKKLRADTQDCGGGGAASDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL
        MKRVVPD DGDR+ GKK RA+TQDC GGG  SD+TGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL
Subjt:  MKRVVPDVDGDRQMGKKLRADTQDCGGGGAASDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL

Query:  ALGGFRRLHSLFIWPLTKPQSSSSTSS-SASSSSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRG
        ALGGFRRLHSLFIWPLTKPQSSSS+SS S+S+SS SS+SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRG
Subjt:  ALGGFRRLHSLFIWPLTKPQSSSSTSS-SASSSSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L2H5 F-box domain-containing protein

1.6e-84

87.37

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Query:  MKRVVPDVDGDRQMGKKLRADTQDC---GGGGAASDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
        MKRVVPD  GDR+MGKK +A+TQD    GGG   SDKTGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
Subjt:  MKRVVPDVDGDRQMGKKLRADTQDC---GGGGAASDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS

Query:  VVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASS------SSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        VVLALGGFRRLHSLFIWPLTKPQSSSS+SSS+SS      SS SS+SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  VVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASS------SSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

A0A1S3BV18 F-box protein GID2-like

2.3e-83

86.84

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Query:  MKRVVPDVDGDRQMGKKLRADTQDC--GGGGAASDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV
        MKRVV D  GDR+MGKK +A+TQD   GGG   SDKTGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV
Subjt:  MKRVVPDVDGDRQMGKKLRADTQDC--GGGGAASDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV

Query:  VLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSS-------SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        VLALGGFRRLHSLFIWPLTKPQSSSS+SSS+S SS SSS       SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  VLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSS-------SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

A0A5A7VFE5 F-box protein GID2-like

2.3e-83

86.84

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Query:  MKRVVPDVDGDRQMGKKLRADTQDC--GGGGAASDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV
        MKRVV D  GDR+MGKK +A+TQD   GGG   SDKTGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV
Subjt:  MKRVVPDVDGDRQMGKKLRADTQDC--GGGGAASDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV

Query:  VLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSS-------SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        VLALGGFRRLHSLFIWPLTKPQSSSS+SSS+S SS SSS       SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Subjt:  VLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSS-------SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

A0A6J1FA22 F-box protein GID2-like

1.9e-82

89.01

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Query:  MKRVVPDVDGDRQMGKKLRADTQDCGGGGAASDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL
        MKRVVP+  GDR+  KK RA + DC GGG  SDKTGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL
Subjt:  MKRVVPDVDGDRQMGKKLRADTQDCGGGGAASDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL

Query:  ALGGFRRLHSLFIWPLTKPQ-SSSSTSSSASSSSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        ALGGFRRLHSLFIWPLTKPQ SSSSTSSSASSSSP    WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFS+RGR
Subjt:  ALGGFRRLHSLFIWPLTKPQ-SSSSTSSSASSSSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

A0A6J1ILD7 F-box protein GID2-like

1.7e-83

88.4

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Query:  MKRVVPDVDGDRQMGKKLRADTQDCGGGGAASDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL
        MKRVVP+  GDR+  KK RA + DC GGG  SDKTGF+NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL
Subjt:  MKRVVPDVDGDRQMGKKLRADTQDCGGGGAASDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVL

Query:  ALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
        ALGGFRRLHSLFIWPLTKPQSSSS+SSS SSS+ SSS WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNF +RGR
Subjt:  ALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

2.5e-26

46.04

Show/hide

Query:  NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSSS
        +L ++L+FEV +  +ARTLA AACVS+ W + AEDERLWE  C R WAN G   +QLR+VVL+LGGFRRLH+++I PL                      
Subjt:  NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSSS

Query:  W--SPFPAMIGSK-PPARWGKDEVHLSLSLLSIRYYEKM
        W  +  P   G + PP R G+D+V LSLSL SI +++ M
Subjt:  W--SPFPAMIGSK-PPARWGKDEVHLSLSLLSIRYYEKM

Q9LUB6 F-box protein SNE

1.9e-10

29.2

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Query:  VNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSS
        +N   ++L E+ + +D  +L  AACV + W   A ++ +WE +C R  +     +  LRSVV ALGG+R L+ L I P                      
Subjt:  VNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSS

Query:  SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKM
               ++   P   W +D++ LSLSL  + YYE++
Subjt:  SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKM

Q9STX3 F-box protein GID2

2.8e-46

53.55

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Query:  MKRVVPDVD--GD--RQMGKKLRADTQDCGGGGAASDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLR
        MKR   D D  GD   +  KK+++  +         ++ GF NLD+NL++EV KHVDA+TLAM++CVSK WHKTA+DERLWELICTRHW N GCG  QLR
Subjt:  MKRVVPDVD--GD--RQMGKKLRADTQDCGGGGAASDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLR

Query:  SVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR
        SVVLALGGFRRLHSL++WPL+KP                              P AR+GKDE+ L+LSLLSIRYYEKM+F+ R
Subjt:  SVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR

Arabidopsis top hits

e value

%identity

Alignment

AT1G21760.1 F-box protein 7

2.7e-04

Show/hide

Query:  LDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTG
        L D LLFEVF  +    L  A+CV ++W  T  +   W   C + W   G
Subjt:  LDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTG

AT4G24210.1 F-box family protein

2.0e-47

53.55

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Query:  MKRVVPDVD--GD--RQMGKKLRADTQDCGGGGAASDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLR
        MKR   D D  GD   +  KK+++  +         ++ GF NLD+NL++EV KHVDA+TLAM++CVSK WHKTA+DERLWELICTRHW N GCG  QLR
Subjt:  MKRVVPDVD--GD--RQMGKKLRADTQDCGGGGAASDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLR

Query:  SVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR
        SVVLALGGFRRLHSL++WPL+KP                              P AR+GKDE+ L+LSLLSIRYYEKM+F+ R
Subjt:  SVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR

AT5G48170.1 F-box family protein

1.4e-11

29.2

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Query:  VNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSS
        +N   ++L E+ + +D  +L  AACV + W   A ++ +WE +C R  +     +  LRSVV ALGG+R L+ L I P                      
Subjt:  VNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSPSSS

Query:  SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKM
               ++   P   W +D++ LSLSL  + YYE++
Subjt:  SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKM

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAAGCGAGTTGTTCCAGATGTGGATGGGGATCGCCAGATGGGGAAGAAACTCAGGGCCGACACCCAAGATTGTGGAGGAGGAGGAGCCGCCTCCGACAAGACT
GGCTTTGTCAATTTGGATGATAATTTGCTCTTTGAGGTTTTCAAGCATGTGGATGCCAGGACTCTGGCTATGGCGGCCTGTGTGAGCAAGCAATGGCACAAAACG
GCCGAAGACGAGCGCCTTTGGGAGCTGATCTGCACCAGGCACTGGGCCAACACCGGCTGCGGCAACCAACAACTCCGATCTGTAGTTCTAGCCCTCGGCGGCTTC
CGTCGCCTCCACTCGCTCTTCATCTGGCCGCTTACCAAGCCCCAATCGTCATCGTCCACGTCTTCATCGGCTTCGTCCTCTTCGCCGTCGTCGTCGTCTTGGTCT
CCGTTTCCGGCGATGATTGGGTCGAAACCGCCCGCCCGGTGGGGGAAGGATGAGGTCCATCTGTCGCTGTCGCTTCTGTCAATTCGTTACTACGAGAAGATGAAT
TTCAGCAACAGAGGCAGATGA

mRNA sequence

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Protein sequence

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MKRVVPDVDGDRQMGKKLRADTQDCGGGGAASDKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGF
RRLHSLFIWPLTKPQSSSSTSSSASSSSPSSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

Lag0036999 (gene) of Sponge gourd (AG-4) v1 genome