CuGenDBv2

Gene ID	Lag0037264
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	DNA-directed RNA polymerase subunit beta
Genome location	chr2:4701163..4703382
RNA-Seq Expression	Lag0037264
Synteny	Lag0037264
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004136341.2 uncharacterized protein LOC101205248 isoform X1 [Cucumis sativus]

3.3e-109

95.59

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Query:  MSCCSSLSAAPTSMSLITNCKFTSSVNKPVIVSMNSRFRASAEVPDYLPADWHEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLITN KFTSSVNKP+IVSMNSRFRASAEVPD+LPADWH+AHKK+P+GP LHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITNCKFTSSVNKPVIVSMNSRFRASAEVPDYLPADWHEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_008466381.1 PREDICTED: uncharacterized protein LOC103503805 [Cucumis melo]

1.6e-108

95.1

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Query:  MSCCSSLSAAPTSMSLITNCKFTSSVNKPVIVSMNSRFRASAEVPDYLPADWHEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLITN KFTSSVNKPV VSMNSRFR SAEVPD+LPADWH+AHKK+P+GP LHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITNCKFTSSVNKPVIVSMNSRFRASAEVPDYLPADWHEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_022132533.1 uncharacterized protein LOC111005365 isoform X1 [Momordica charantia]

2.0e-106

94.12

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Query:  MSCCSSLSAAPTSMSLITNCKFTSSVNKPVIVSMNSRFRASAEVPDYLPADWHEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAPTSMSLIT  KF  +V+KP IVSMNSRFRASAEVPD+LPADW+EAHKKNPLGPSLHFTAEEAIQHQLDALRYND+PHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITNCKFTSSVNKPVIVSMNSRFRASAEVPDYLPADWHEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILS L VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_022981205.1 uncharacterized protein LOC111480415 isoform X1 [Cucurbita maxima]

2.6e-106

94.12

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Query:  MSCCSSLSAAPTSMSLITNCKFTSSVNKPVIVSMNSRFRASAEVPDYLPADWHEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAPTSMSLI+  KFT SVNK VIVSMNSRFRASAEVPD+LPADWH+AHKKNPLGPSLHFTAEEAIQ QLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITNCKFTSSVNKPVIVSMNSRFRASAEVPDYLPADWHEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        F+PL+RSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTES+LNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_038898556.1 uncharacterized protein LOC120086152 [Benincasa hispida]

2.8e-108

95.59

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Query:  MSCCSSLSAAPTSMSLITNCKFTSSVNKPVIVSMNSRFRASAEVPDYLPADWHEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAPTSMSLITN KFTSSVNKPVIVSM SRFRASAEVPD+LPADWH+AHKK+P+GP LHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITNCKFTSSVNKPVIVSMNSRFRASAEVPDYLPADWHEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSL VEEN FKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LED5 Uncharacterized protein

1.6e-109

95.59

Show/hide

Query:  MSCCSSLSAAPTSMSLITNCKFTSSVNKPVIVSMNSRFRASAEVPDYLPADWHEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLITN KFTSSVNKP+IVSMNSRFRASAEVPD+LPADWH+AHKK+P+GP LHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITNCKFTSSVNKPVIVSMNSRFRASAEVPDYLPADWHEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A1S3CR52 uncharacterized protein LOC103503805

7.9e-109

95.1

Show/hide

Query:  MSCCSSLSAAPTSMSLITNCKFTSSVNKPVIVSMNSRFRASAEVPDYLPADWHEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLITN KFTSSVNKPV VSMNSRFR SAEVPD+LPADWH+AHKK+P+GP LHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITNCKFTSSVNKPVIVSMNSRFRASAEVPDYLPADWHEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A5D3E6H6 Uncharacterized protein

7.9e-109

95.1

Show/hide

Query:  MSCCSSLSAAPTSMSLITNCKFTSSVNKPVIVSMNSRFRASAEVPDYLPADWHEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAP+SMSLITN KFTSSVNKPV VSMNSRFR SAEVPD+LPADWH+AHKK+P+GP LHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITNCKFTSSVNKPVIVSMNSRFRASAEVPDYLPADWHEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A6J1BWI6 uncharacterized protein LOC111005365 isoform X1

9.7e-107

94.12

Show/hide

Query:  MSCCSSLSAAPTSMSLITNCKFTSSVNKPVIVSMNSRFRASAEVPDYLPADWHEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAPTSMSLIT  KF  +V+KP IVSMNSRFRASAEVPD+LPADW+EAHKKNPLGPSLHFTAEEAIQHQLDALRYND+PHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITNCKFTSSVNKPVIVSMNSRFRASAEVPDYLPADWHEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILS L VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A6J1IYU2 uncharacterized protein LOC111480415 isoform X1

1.3e-106

94.12

Show/hide

Query:  MSCCSSLSAAPTSMSLITNCKFTSSVNKPVIVSMNSRFRASAEVPDYLPADWHEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSAAPTSMSLI+  KFT SVNK VIVSMNSRFRASAEVPD+LPADWH+AHKKNPLGPSLHFTAEEAIQ QLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAAPTSMSLITNCKFTSSVNKPVIVSMNSRFRASAEVPDYLPADWHEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        F+PL+RSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTES+LNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G25605.1 unknown protein

8.8e-76

66.67

Show/hide

Query:  MSCCSSLSAAPTSMSLITNCKFTSSVNKPVIVSMNSRFRASAEVPDYLPADWHEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG
        MS  S +  +P S SL  N K  +   +   ++ N    +S++VPD+L ADW E+ +K P GP L F+AE+A++HQLDAL+YND P  DYGIEVMY+FAG
Subjt:  MSCCSSLSAAPTSMSLITNCKFTSSVNKPVIVSMNSRFRASAEVPDYLPADWHEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDP  RSTYFGPFFDLGQFERFRR+FHHS+YRVLLGHK+RK+LSSL VEENRFKQR+WI+G RP+EEEIF+FTM QR+GGSWDGYWLTESLL+DGD FSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        G+AY
Subjt:  GLAY

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCATGTTGTTCGTCGTTATCAGCGGCTCCTACATCCATGTCTCTGATTACCAACTGCAAATTCACGAGTTCTGTCAACAAACCGGTGATCGTTTCCATGAATTCTCG
CTTCAGAGCTTCTGCAGAAGTTCCCGATTATCTTCCCGCGGATTGGCATGAAGCACACAAGAAGAATCCTCTAGGTCCAAGTTTACATTTCACTGCAGAAGAAGCTATTC
AACACCAGCTAGATGCACTGAGATACAATGATCGACCTCATCAAGATTATGGAATTGAGGTCATGTACCAGTTTGCCGGGTTTGATCCTCTTCGAAGGTCTACATATTTT
GGTCCATTTTTCGATTTGGGACAGTTTGAAAGATTCAGACGAGTATTCCACCATTCGACATATCGAGTGTTGCTTGGTCATAAAGAGAGAAAGATCTTGAGCAGTTTGTC
TGTAGAGGAGAACCGATTCAAGCAGCGGGTATGGATACGAGGTTGTCGCCCCAAGGAAGAAGAAATATTTCAATTCACCATGGTTCAGAGGGTTGGCGGCTCGTGGGATG
GGTATTGGCTTACAGAAAGTTTACTTAACGATGGGGATGCATTTAGTGGAGGCTTAGCTTACTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MSCCSSLSAAPTSMSLITNCKFTSSVNKPVIVSMNSRFRASAEVPDYLPADWHEAHKKNPLGPSLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYF
GPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLSVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY

Lag0037264 (gene) of Sponge gourd (AG-4) v1 genome