; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0037268 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0037268
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationchr2:4721190..4722634
RNA-Seq ExpressionLag0037268
SyntenyLag0037268
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607529.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]1.0e-3576.15Show/hide
Query:  MWQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIYANSS
        MW+ALLSACRI+KDT TA+RV +KVIELEPLASASYVLLYNIYMDAGN   ALKV+KLME RRIKKE GLSWI+VGD++YSFVSGDRSH+ SELIYA   
Subjt:  MWQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIYANSS

Query:  ESDEKPENL
        E   K ++L
Subjt:  ESDEKPENL

KAG7037171.1 Pentatricopeptide repeat-containing protein [Cucurbita argyrosperma subsp. argyrosperma]1.0e-3576.15Show/hide
Query:  MWQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIYANSS
        MW+ALLSACRI+KDT TA+RV +KVIELEPLASASYVLLYNIYMDAGN   ALKV+KLME RRIKKE GLSWI+VGD++YSFVSGDRSH+ SELIYA   
Subjt:  MWQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIYANSS

Query:  ESDEKPENL
        E   K ++L
Subjt:  ESDEKPENL

XP_022973377.1 pentatricopeptide repeat-containing protein At3g13880 [Cucurbita maxima]9.3e-3778.9Show/hide
Query:  MWQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIYANSS
        MW+ALLSACRI+KDT TA+RV +KVIELEPLASASYVLLYNIYMDAGN   ALKV+KLME RRIKKE GLSWIEVGD+VYSFVSGDRSH+ SELIYA   
Subjt:  MWQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIYANSS

Query:  ESDEKPENL
        E   K +NL
Subjt:  ESDEKPENL

XP_023523804.1 pentatricopeptide repeat-containing protein At3g13880 isoform X1 [Cucurbita pepo subsp. pepo]1.6e-3677.98Show/hide
Query:  MWQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIYANSS
        MW+ALLSACRI+KDT TA+RV +KVIELEPLASASYVLLYNIYMDAGN   ALKV+KLME RRIKKE GLSWIEVGDK+YSFVSGDRSH+ SELIYA   
Subjt:  MWQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIYANSS

Query:  ESDEKPENL
        E   K ++L
Subjt:  ESDEKPENL

XP_023523805.1 pentatricopeptide repeat-containing protein At3g13880 isoform X2 [Cucurbita pepo subsp. pepo]1.6e-3677.98Show/hide
Query:  MWQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIYANSS
        MW+ALLSACRI+KDT TA+RV +KVIELEPLASASYVLLYNIYMDAGN   ALKV+KLME RRIKKE GLSWIEVGDK+YSFVSGDRSH+ SELIYA   
Subjt:  MWQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIYANSS

Query:  ESDEKPENL
        E   K ++L
Subjt:  ESDEKPENL

TrEMBL top hitse value%identityAlignment
A0A6J1CJD1 pentatricopeptide repeat-containing protein At3g13880 isoform X18.5e-3676.15Show/hide
Query:  MWQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIYANSS
        MW+ALLSAC I+KDT TAQRV +KVIELEPL SASYVLL+NIYMDAGN   ALKV+KLMEARRIKKE GLSWIEVGD VYSFVSGDRSH+ SELIYA   
Subjt:  MWQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIYANSS

Query:  ESDEKPENL
        +   K ++L
Subjt:  ESDEKPENL

A0A6J1CL46 pentatricopeptide repeat-containing protein At3g13880 isoform X28.5e-3676.15Show/hide
Query:  MWQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIYANSS
        MW+ALLSAC I+KDT TAQRV +KVIELEPL SASYVLL+NIYMDAGN   ALKV+KLMEARRIKKE GLSWIEVGD VYSFVSGDRSH+ SELIYA   
Subjt:  MWQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIYANSS

Query:  ESDEKPENL
        +   K ++L
Subjt:  ESDEKPENL

A0A6J1EX55 pentatricopeptide repeat-containing protein At3g13880 isoform X25.0e-3676.15Show/hide
Query:  MWQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIYANSS
        MW+ALLSACRI+KDT TA+RV +KVIELEPLASASYVLLYNIYMDAGN   ALKV+KLME RRIKKE GLSWI+VGD++YSFVSGDRSH+ SELIYA   
Subjt:  MWQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIYANSS

Query:  ESDEKPENL
        E   K ++L
Subjt:  ESDEKPENL

A0A6J1F1V7 pentatricopeptide repeat-containing protein At3g13880 isoform X15.0e-3676.15Show/hide
Query:  MWQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIYANSS
        MW+ALLSACRI+KDT TA+RV +KVIELEPLASASYVLLYNIYMDAGN   ALKV+KLME RRIKKE GLSWI+VGD++YSFVSGDRSH+ SELIYA   
Subjt:  MWQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIYANSS

Query:  ESDEKPENL
        E   K ++L
Subjt:  ESDEKPENL

A0A6J1I7D1 pentatricopeptide repeat-containing protein At3g138804.5e-3778.9Show/hide
Query:  MWQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIYANSS
        MW+ALLSACRI+KDT TA+RV +KVIELEPLASASYVLLYNIYMDAGN   ALKV+KLME RRIKKE GLSWIEVGD+VYSFVSGDRSH+ SELIYA   
Subjt:  MWQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIYANSS

Query:  ESDEKPENL
        E   K +NL
Subjt:  ESDEKPENL

SwissProt top hitse value%identityAlignment
Q9LRV9 Pentatricopeptide repeat-containing protein At3g138801.5e-2151.58Show/hide
Query:  WQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIY
        W+ALLS+CR+YKD++  +RV ++++ELEP AS SYVLL+NIY D+G    A +V++LM  R +KKE  LSWI +G++ +SF   D SH  S++IY
Subjt:  WQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIY

Q9LTF4 Putative pentatricopeptide repeat-containing protein At5g526302.2e-1739.06Show/hide
Query:  MWQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIYANSS
        +W ALL++C ++K+T  A     KV EL P++S  ++ L N Y   G    A K +KL+  R  KKETGLSW+E  +KV++F +G+R HEKS+ IY   +
Subjt:  MWQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIYANSS

Query:  ESDEKPENLFGLPLTMKLFSMVDNREND
        E  E+ E    +  T  +   VD  E +
Subjt:  ESDEKPENLFGLPLTMKLFSMVDNREND

Q9SMZ2 Pentatricopeptide repeat-containing protein At4g331702.2e-1739.23Show/hide
Query:  MWQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIYANSS
        M++ LL+ACR+  DT T +RV  K++ELEPL S++YVLL N+Y  A         + +M+  ++KK+ G SWIEV +K++ FV  DRS+ ++ELIY    
Subjt:  MWQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIYANSS

Query:  ESDEKPENLFGLPLTMKLFSMVDNRENDDE
        +     +    +P T   F++VD  E + E
Subjt:  ESDEKPENLFGLPLTMKLFSMVDNRENDDE

Q9SR82 Putative pentatricopeptide repeat-containing protein At3g088204.2e-1637.5Show/hide
Query:  MWQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIYANSS
        +W ALLS CR+ KDT  A+ V +++I LEP  + +YV L NIY   G    A +V+ +M  + +KK  G SWIE+  KV+ F++ D+SH  S+ IYA   
Subjt:  MWQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIYANSS

Query:  ESDEKPENLFGLPLTMKLFSMVDNREND
        +   +   +  +P T  +F  V+  E +
Subjt:  ESDEKPENLFGLPLTMKLFSMVDNREND

Q9ZUW3 Pentatricopeptide repeat-containing protein At2g276106.3e-2038.28Show/hide
Query:  MWQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIYANSS
        +W+ +L+ACR++K T   +   +K+I ++P  SA+YVLL N+Y ++G+     KV+KLM  R +KKE G SWIEV +K YSF++GDRSH   + IY    
Subjt:  MWQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIYANSS

Query:  ESDEKPENLFGLPLTMKLFSMVDNREND
        +   + ++L   P T  +   +D+   +
Subjt:  ESDEKPENLFGLPLTMKLFSMVDNREND

Arabidopsis top hitse value%identityAlignment
AT2G27610.1 Tetratricopeptide repeat (TPR)-like superfamily protein4.5e-2138.28Show/hide
Query:  MWQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIYANSS
        +W+ +L+ACR++K T   +   +K+I ++P  SA+YVLL N+Y ++G+     KV+KLM  R +KKE G SWIEV +K YSF++GDRSH   + IY    
Subjt:  MWQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIYANSS

Query:  ESDEKPENLFGLPLTMKLFSMVDNREND
        +   + ++L   P T  +   +D+   +
Subjt:  ESDEKPENLFGLPLTMKLFSMVDNREND

AT3G08820.1 Pentatricopeptide repeat (PPR) superfamily protein3.0e-1737.5Show/hide
Query:  MWQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIYANSS
        +W ALLS CR+ KDT  A+ V +++I LEP  + +YV L NIY   G    A +V+ +M  + +KK  G SWIE+  KV+ F++ D+SH  S+ IYA   
Subjt:  MWQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIYANSS

Query:  ESDEKPENLFGLPLTMKLFSMVDNREND
        +   +   +  +P T  +F  V+  E +
Subjt:  ESDEKPENLFGLPLTMKLFSMVDNREND

AT3G13880.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.1e-2251.58Show/hide
Query:  WQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIY
        W+ALLS+CR+YKD++  +RV ++++ELEP AS SYVLL+NIY D+G    A +V++LM  R +KKE  LSWI +G++ +SF   D SH  S++IY
Subjt:  WQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIY

AT4G33170.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.6e-1839.23Show/hide
Query:  MWQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIYANSS
        M++ LL+ACR+  DT T +RV  K++ELEPL S++YVLL N+Y  A         + +M+  ++KK+ G SWIEV +K++ FV  DRS+ ++ELIY    
Subjt:  MWQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIYANSS

Query:  ESDEKPENLFGLPLTMKLFSMVDNRENDDE
        +     +    +P T   F++VD  E + E
Subjt:  ESDEKPENLFGLPLTMKLFSMVDNRENDDE

AT5G52630.1 mitochondrial RNAediting factor 11.6e-1839.06Show/hide
Query:  MWQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIYANSS
        +W ALL++C ++K+T  A     KV EL P++S  ++ L N Y   G    A K +KL+  R  KKETGLSW+E  +KV++F +G+R HEKS+ IY   +
Subjt:  MWQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIYANSS

Query:  ESDEKPENLFGLPLTMKLFSMVDNREND
        E  E+ E    +  T  +   VD  E +
Subjt:  ESDEKPENLFGLPLTMKLFSMVDNREND


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGCAAGCTTTACTAAGTGCCTGCAGGATTTACAAGGATACATTAACTGCACAACGTGTTGAACAGAAAGTAATTGAGCTTGAACCTCTTGCATCTGCATCTTATGT
GCTTCTTTATAACATTTATATGGATGCTGGAAACATTTTCGTTGCCTTAAAAGTTAAGAAGTTAATGGAAGCTCGAAGAATTAAGAAGGAAACTGGTCTAAGCTGGATAG
AAGTAGGCGATAAAGTCTACTCATTTGTTTCGGGTGATCGATCTCACGAAAAAAGTGAATTGATTTATGCCAACTCCAGTGAGAGTGATGAAAAACCTGAGAATTTGTTT
GGACTGCCATTGACAATGAAGCTCTTCTCCATGGTTGATAATAGAGAGAATGATGATGAAACGCACGATCGCTGGGAAGTGCTTTTGCAACAAAACTCAGTTGAATTGCA
TCATTGTCCATTAACAATGTCTCGAGGAGGTTTGTCAATTTGCCTGCCGCAGCCATTGGTTAAGATTTTAGAAAGACAGGTGCTGGCGAGAACGTTTCTGCAGGGACGGC
GGCCTAGTGGAATCCACTCCACTTCCTCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGCAAGCTTTACTAAGTGCCTGCAGGATTTACAAGGATACATTAACTGCACAACGTGTTGAACAGAAAGTAATTGAGCTTGAACCTCTTGCATCTGCATCTTATGT
GCTTCTTTATAACATTTATATGGATGCTGGAAACATTTTCGTTGCCTTAAAAGTTAAGAAGTTAATGGAAGCTCGAAGAATTAAGAAGGAAACTGGTCTAAGCTGGATAG
AAGTAGGCGATAAAGTCTACTCATTTGTTTCGGGTGATCGATCTCACGAAAAAAGTGAATTGATTTATGCCAACTCCAGTGAGAGTGATGAAAAACCTGAGAATTTGTTT
GGACTGCCATTGACAATGAAGCTCTTCTCCATGGTTGATAATAGAGAGAATGATGATGAAACGCACGATCGCTGGGAAGTGCTTTTGCAACAAAACTCAGTTGAATTGCA
TCATTGTCCATTAACAATGTCTCGAGGAGGTTTGTCAATTTGCCTGCCGCAGCCATTGGTTAAGATTTTAGAAAGACAGGTGCTGGCGAGAACGTTTCTGCAGGGACGGC
GGCCTAGTGGAATCCACTCCACTTCCTCGTAA
Protein sequenceShow/hide protein sequence
MWQALLSACRIYKDTLTAQRVEQKVIELEPLASASYVLLYNIYMDAGNIFVALKVKKLMEARRIKKETGLSWIEVGDKVYSFVSGDRSHEKSELIYANSSESDEKPENLF
GLPLTMKLFSMVDNRENDDETHDRWEVLLQQNSVELHHCPLTMSRGGLSICLPQPLVKILERQVLARTFLQGRRPSGIHSTSS