CuGenDBv2

Gene ID	Lag0037400
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	t-SNARE coiled-coil homology domain-containing protein
Genome location	chr2:5879761..5885259
RNA-Seq Expression	Lag0037400
Synteny	Lag0037400
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0015031 - protein transport (biological process) GO:0005634 - nucleus (cellular component) GO:0030173 - integral component of Golgi membrane (cellular component) GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR000727 - Target SNARE coiled-coil homology domain IPR039897 - BET1-like protein

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6608268.1 Bet1-like protein, partial [Cucurbita argyrosperma subsp. sororia]

1.4e-49

94.39

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Query:  SYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNNYICGQKY
        SYRGGSSFYNGDAAPYRSREGLSTRPAA+SDEIQLQIDPMQGDLDD+IVGLH QVKRLRNIAQ+IGTEAKSQQDFLDQLQMTLIKAQAGVKNN ICG+KY
Subjt:  SYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNNYICGQKY

Query:  PENECFP
        PENECFP
Subjt:  PENECFP

XP_004136265.1 bet1-like protein At1g29060 [Cucumis sativus]

1.2e-40

95.74

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Query:  TSYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNN
        +S+RGGSSFYNGDAA +RSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNN
Subjt:  TSYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNN

XP_008466185.1 PREDICTED: bet1-like protein At1g29060 [Cucumis melo]

2.4e-41

95.74

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Query:  TSYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNN
        +S+RGGSSFYNGDAAP+RSREGLSTRPAA+SDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNN
Subjt:  TSYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNN

XP_022940948.1 bet1-like protein At1g29060 [Cucurbita moschata]

7.1e-41

95.7

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Query:  SYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNN
        SYRGGSSFYNGDAAPYRSREGLSTRPAA+SDEIQLQIDPMQGDLDD+IVGLH QVKRLRNIAQ+IGTEAKSQQDFLDQLQMTLIKAQAGVKNN
Subjt:  SYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNN

XP_022980898.1 bet1-like protein At1g29060 [Cucurbita maxima]

1.6e-40

94.62

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Query:  SYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNN
        SYRGGSSFYNGDAAPYRSREGLSTRP+A+SDEIQLQIDPMQGDLDD+IVGLH QVKRLRNIAQ+IGTEAKSQQDFLDQLQMTLIKAQAGVKNN
Subjt:  SYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LHL4 t-SNARE coiled-coil homology domain-containing protein

5.9e-41

95.74

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Query:  TSYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNN
        +S+RGGSSFYNGDAA +RSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNN
Subjt:  TSYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNN

A0A1S3CQM7 bet1-like protein At1g29060

1.2e-41

95.74

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Query:  TSYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNN
        +S+RGGSSFYNGDAAP+RSREGLSTRPAA+SDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNN
Subjt:  TSYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNN

A0A5A7TAQ3 Bet1-like protein

1.2e-41

95.74

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Query:  TSYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNN
        +S+RGGSSFYNGDAAP+RSREGLSTRPAA+SDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNN
Subjt:  TSYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNN

A0A6J1FQQ6 bet1-like protein At1g29060

3.4e-41

95.7

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Query:  SYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNN
        SYRGGSSFYNGDAAPYRSREGLSTRPAA+SDEIQLQIDPMQGDLDD+IVGLH QVKRLRNIAQ+IGTEAKSQQDFLDQLQMTLIKAQAGVKNN
Subjt:  SYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNN

A0A6J1J0M1 bet1-like protein At1g29060

7.7e-41

94.62

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Query:  SYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNN
        SYRGGSSFYNGDAAPYRSREGLSTRP+A+SDEIQLQIDPMQGDLDD+IVGLH QVKRLRNIAQ+IGTEAKSQQDFLDQLQMTLIKAQAGVKNN
Subjt:  SYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNN

SwissProt top hits

e value

%identity

Alignment

Q8L9S0 Bet1-like protein At1g29060

2.6e-30

72.04

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Query:  SYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNN
        S RG      G A PYRSREGLSTR A+ S+EIQL+IDPM  DLDDEI+GLH QV++L+NIAQ+IG+EAKSQ+DFLD+LQMTLI+AQAGVKNN
Subjt:  SYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNN

Q8VXX9 Bet1-like protein At4g14600

1.5e-30

76.4

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Query:  GSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNN
        G S Y G AAPYRSREGLSTR AA S+EIQL+IDPM  DLDDEI GLH QV++L+NIAQ+IG+EAK Q+DFLD+LQMTLI+AQAGVKNN
Subjt:  GSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNN

Arabidopsis top hits

e value

%identity

Alignment

AT1G29060.1 Target SNARE coiled-coil domain protein

1.9e-31

72.04

Show/hide

Query:  SYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNN
        S RG      G A PYRSREGLSTR A+ S+EIQL+IDPM  DLDDEI+GLH QV++L+NIAQ+IG+EAKSQ+DFLD+LQMTLI+AQAGVKNN
Subjt:  SYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNN

AT4G14600.1 Target SNARE coiled-coil domain protein

1.1e-31

76.4

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Query:  GSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNN
        G S Y G AAPYRSREGLSTR AA S+EIQL+IDPM  DLDDEI GLH QV++L+NIAQ+IG+EAK Q+DFLD+LQMTLI+AQAGVKNN
Subjt:  GSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNN

Sequences

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CDS sequence

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ATGCGTGTTCGATTTTCAAAACAAATTAAAGAACGCGAACGCGTCTCTGATAAACGGGAGTCGGAAAAAGCCGAATTTGCTTCGAGCTCTCCACCTTCCGACTCGATCGA
AGATACTGAAACTTCGTATCGTGGCGGTAGTTCCTTCTACAACGGTGATGCCGCGCCTTATCGCTCCAGGGAGGGGCTTAGCACAAGACCAGCTGCTTCTTCCGATGAAA
TTCAACTGCAGATCGATCCGATGCAAGGGGACTTGGATGACGAGATCGTTGGTCTCCATAGCCAAGTTAAAAGGCTCAGAAATATTGCTCAAGACATCGGGACAGAAGCA
AAATCCCAGCAAGATTTTCTAGATCAGTTGCAAATGACATTGATCAAAGCTCAAGCAGGAGTGAAGAACAACTATATATGTGGTCAAAAATATCCAGAAAATGAATGCTT
TCCTCACTTTCCTCATTATGAAATGGAATACCAGTTGCTGGCCTGCGAAGAGGAAAAGAAACAGAAATGA

mRNA sequence

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Protein sequence

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MRVRFSKQIKERERVSDKRESEKAEFASSSPPSDSIEDTETSYRGGSSFYNGDAAPYRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAQDIGTEA
KSQQDFLDQLQMTLIKAQAGVKNNYICGQKYPENECFPHFPHYEMEYQLLACEEEKKQK

Lag0037400 (gene) of Sponge gourd (AG-4) v1 genome