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Lag0037424 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0037424
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr2:6089260..6090432
RNA-Seq ExpressionLag0037424
SyntenyLag0037424
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]6.5e-3737.66Show/hide
Query:  EGSYQTSQKKAENEDIERLIGQEGSVFTDEIMRGEVPHKFKVPNFPQYDGKKDPKQHLDAYQTWMDFHGANEATR----------------------SIG
        E S +    K +  D+E L+ Q  S FT+EIMR +VP KFK+P   Q+D   DP  HLDAY+ WMD +G +EA R                      SI 
Subjt:  EGSYQTSQKKAENEDIERLIGQEGSVFTDEIMRGEVPHKFKVPNFPQYDGKKDPKQHLDAYQTWMDFHGANEATR----------------------SIG

Query:  SFKELARAFVTQFLGARSRQKPQINLLTVKQGPREGLRDYINRFSNEVLQVEGYDDGVALTA--------------------VISEELLRSKQ-------
        SFK LARAFVTQF+G R R +P   LLT+KQ   E LRDY+ RF+ E LQVEG  D V+L A                      SE L R+++       
Subjt:  SFKELARAFVTQFLGARSRQKPQINLLTVKQGPREGLRDYINRFSNEVLQVEGYDDGVALTA--------------------VISEELLRSKQ-------

Query:  --EERESRGMSISDRRREYRGKRHQG---EGRGRSRPEHPSAN-----------GRCRPEAKE---LQGRAEPKARFDRRNMNKYCMFHGDHDHTTRECI
           +RE  G   +D +RE  G + QG   E R RS  + P               +   E K+   L+     KA   +R+  +YC+FH DH H T++C 
Subjt:  --EERESRGMSISDRRREYRGKRHQG---EGRGRSRPEHPSAN-----------GRCRPEAKE---LQGRAEPKARFDRRNMNKYCMFHGDHDHTTRECI

Query:  QLRDEIETLIREGYLK
         L++E+E LIR GYLK
Subjt:  QLRDEIETLIREGYLK

XP_022159109.1 uncharacterized protein LOC111025548 [Momordica charantia]4.4e-2538.66Show/hide
Query:  EGSYQTSQKKAENEDIERLIGQEGSVFTDEIMRGEVPHKFKVPNFPQYDGKKDPKQHLDAYQTWMDFHGANEATR----------------------SIG
        E S +   +K +  D+E L+GQ  S FT+EIMR +VP KFK+P    +DG  +P  HLDAY+ WMD +G ++A R                      SI 
Subjt:  EGSYQTSQKKAENEDIERLIGQEGSVFTDEIMRGEVPHKFKVPNFPQYDGKKDPKQHLDAYQTWMDFHGANEATR----------------------SIG

Query:  SFKELARAFVTQFLGARSRQKPQINLLTVKQGPREGLRDYINRFSNEVLQVEGYDDGVALTAVIS---EELLR-----------SKQEERESRGMSISD-
        SFK LARAF+TQF+G R R +P   LLT+KQ   E L DY+ RF+ E LQ+EG  D V+L A +S   +E L            S+   R  R MS S+ 
Subjt:  SFKELARAFVTQFLGARSRQKPQINLLTVKQGPREGLRDYINRFSNEVLQVEGYDDGVALTAVIS---EELLR-----------SKQEERESRGMSISD-

Query:  --RRREYRGKR-HQGEGRGRSRPEHPSANGRCRPEAKE
           +RE  GKR  Q   R   +P+      R R   K+
Subjt:  --RRREYRGKR-HQGEGRGRSRPEHPSANGRCRPEAKE

XP_024024428.1 uncharacterized protein LOC112092448 [Morus notabilis]1.1e-2331.41Show/hide
Query:  FTDEIMRGEVPHKFKVPNFPQYDGKKDPKQHLDAYQTWMDFHGANEAT----------------------RSIGSFKELARAFVTQFLGARSRQKPQINL
        FT+ I+R  +P K+K P  P YDG+ DP  HL+ Y   M  +G  E                         SI S+ +L   F+TQF+G +    P+ NL
Subjt:  FTDEIMRGEVPHKFKVPNFPQYDGKKDPKQHLDAYQTWMDFHGANEAT----------------------RSIGSFKELARAFVTQFLGARSRQKPQINL

Query:  LTVKQGPREGLRDYINRFSNEVLQVEGYDDGVALTAVIS---------------------------EELLRSKQEERESRGMSISDRRREYR-------G
          V QGP E L+D+I RF  +V   EG  D VAL   +S                           +  + +++ ++  +  + +  + E R       G
Subjt:  LTVKQGPREGLRDYINRFSNEVLQVEGYDDGVALTAVIS---------------------------EELLRSKQEERESRGMSISDRRREYR-------G

Query:  KRHQGEGRGRSRPEHPSANGRCRPEAKELQGRAEPKARFDRRNMNKYCMFHGDHDHTTRECIQLRDEIETLIREGYL
        K+H+G  + ++ P H     R  P       +++P     RRN NKYC FHG+  HTT EC  LRDE+E LIREG L
Subjt:  KRHQGEGRGRSRPEHPSANGRCRPEAKELQGRAEPKARFDRRNMNKYCMFHGDHDHTTRECIQLRDEIETLIREGYL

XP_024041095.1 uncharacterized protein LOC112098853 [Citrus clementina]2.1e-2731Show/hide
Query:  EGSYQTSQKKAENEDIERLIGQEGSVFTDEIMRGEVPHKFKVPNFPQYDGKKDPKQHLDAYQTWMDFHGANEA----------------------TRSIG
        E   +  Q   E   ++ +  +    FT +IM  + P +F +P    YDG++DP +HL+ Y+T M+  GA++A                        SI 
Subjt:  EGSYQTSQKKAENEDIERLIGQEGSVFTDEIMRGEVPHKFKVPNFPQYDGKKDPKQHLDAYQTWMDFHGANEA----------------------TRSIG

Query:  SFKELARAFVTQFLGARSRQKPQINLLTVKQGPREGLRDYINRFSNEVLQVEGYDDGVALTAVI--------------------------------SEEL
        SF +L+R F + F  AR R KP   LLTVKQ   E LRDYI R++NE+ QV+GYDDG+AL+ ++                                +EE 
Subjt:  SFKELARAFVTQFLGARSRQKPQINLLTVKQGPREGLRDYINRFSNEVLQVEGYDDGVALTAVI--------------------------------SEEL

Query:  LRSKQEER--ESRGMSISDRRREYRGKR-HQGEGRGRSRPEHPSANGRCRPEA-------KELQGRAEP-----------------KARFDRRNMNKYCM
         +++ +E+   ++G    D +RE R  R  Q   R + RP   S     RP          EL    E                  K    RRN NKYC 
Subjt:  LRSKQEER--ESRGMSISDRRREYRGKR-HQGEGRGRSRPEHPSANGRCRPEA-------KELQGRAEP-----------------KARFDRRNMNKYCM

Query:  FHGDHDHTTRECIQLRDEIETLIREGYLK
        FH DH H T EC +L+++IE+L+R+G L+
Subjt:  FHGDHDHTTRECIQLRDEIETLIREGYLK

XP_030955724.1 uncharacterized protein LOC115977839 [Quercus lobata]4.1e-2330.98Show/hide
Query:  IERLIGQEGSVFTDEIMRGEVPHKFKVPNFPQYDGKKDPKQHLDAYQTWMDFHGANE----------------------ATRSIGSFKELARAFVTQFLG
        IE L+ +  S FT  I    +P KFK+P+   YDG +DP  H+  ++T M   G  +                         S+ SF+EL++ FV  F+G
Subjt:  IERLIGQEGSVFTDEIMRGEVPHKFKVPNFPQYDGKKDPKQHLDAYQTWMDFHGANE----------------------ATRSIGSFKELARAFVTQFLG

Query:  ARSRQKPQINLLTVKQGPREGLRDYINRFSNEVLQVEGYDDGVALTAV---ISEELLRSKQEERESRGMSISDRRREYRGKRH----------QGEGRGR
         +  ++   +LLT++QG  E LR +I RF+ E L V+  DD + L A    I+ +L   K  E+E + M+   R+R  R + H            +GR  
Subjt:  ARSRQKPQINLLTVKQGPREGLRDYINRFSNEVLQVEGYDDGVALTAV---ISEELLRSKQEERESRGMSISDRRREYRGKRH----------QGEGRGR

Query:  SRPEHPSAN----GRCR----------------PEAKELQGRAEPKARFDRRNMNKYCMFHGDHDHTTRECIQLRDEIETLIREGYLKSRSHHFMVR
         R E         GR +                 +   L+   + K   ++RN NKYC FH DH H T EC  L+ +IE LIR+G LK    HF+ R
Subjt:  SRPEHPSAN----GRCR----------------PEAKELQGRAEPKARFDRRNMNKYCMFHGDHDHTTRECIQLRDEIETLIREGYLKSRSHHFMVR

TrEMBL top hitse value%identityAlignment
A0A1R3I5P8 Retrotransposon gag protein5.8e-2330.5Show/hide
Query:  DIERLIGQEGSVFTDEIMRGEVPHKFKVPNFPQYDGKKDPKQHLDAYQTWMDFHGANEATRSIGSFKELARAFVTQFLGARSRQKPQINLLTVKQGPREG
        D++ L   E S FT+EI R + P  F++P    YDG  DP  HL+ ++T M   GA++   SI SFKEL ++F+T F+ +R  +K  + L+ ++  P E 
Subjt:  DIERLIGQEGSVFTDEIMRGEVPHKFKVPNFPQYDGKKDPKQHLDAYQTWMDFHGANEATRSIGSFKELARAFVTQFLGARSRQKPQINLLTVKQGPREG

Query:  LRDYINRFSNEVLQVEGYDDGVALTAVIS----------------------EELLRSKQEERESRGMSISDRRREYR--------------GKRHQGEG-
        LRDY+ RF+ E LQV+  +  VA+ A+++                      E LLR+++       M++   + ++R              GKR    G 
Subjt:  LRDYINRFSNEVLQVEGYDDGVALTAVIS----------------------EELLRSKQEERESRGMSISDRRREYR--------------GKRHQGEG-

Query:  -RGRSRPEH----------PSANGRCRPEAKELQGRAEPKARFDRRNMNKYCMFHGDHDHTTRECIQLRDEIETLIREGYLK
          G   PE           P A    + E   L    +P  +   R  +K C FH DH H T +   L++EIE L+R G+L+
Subjt:  -RGRSRPEH----------PSANGRCRPEAKELQGRAEPKARFDRRNMNKYCMFHGDHDHTTRECIQLRDEIETLIREGYLK

A0A2N9EW93 Ribonuclease H4.4e-2330.58Show/hide
Query:  QTSQKKAENEDIERLIGQEGSVFTDEIMRGEVPHKFKVPNFPQYDGKKDPKQHLDAYQTWMDFHGANE----------------------ATRSIGSFKE
        Q   K A+N D+  L+ +  S FT  I    +P KFKVP    +DG KDP  +LD+++T M  HG ++                       T SI +F +
Subjt:  QTSQKKAENEDIERLIGQEGSVFTDEIMRGEVPHKFKVPNFPQYDGKKDPKQHLDAYQTWMDFHGANE----------------------ATRSIGSFKE

Query:  LARAFVTQFLGARSRQKPQINLLTVKQGPREGLRDYINRFSNEVLQVEGYDDGVALTAV--------------------ISEELLRSK-----QEERESR
        L+RAF+  F+G R   +P   LL ++Q   E LR Y+ RF+ E +Q++  ++ VALTA                     +SE +  ++     ++  E+R
Subjt:  LARAFVTQFLGARSRQKPQINLLTVKQGPREGLRDYINRFSNEVLQVEGYDDGVALTAV--------------------ISEELLRSK-----QEERESR

Query:  GMSISDRRREYRGKRHQGEGRGRSRPEHPSANGR-CRPEAKELQGRAEPKARFDRRNMNKYCMFHGDHDHTTRECIQLRDEIETLIREGYL
           +S +R+E   +R        S+ ++P    +      +  QG      R D RN+  YC FH DH HTT +C  L+ +IE LIR+G L
Subjt:  GMSISDRRREYRGKRHQGEGRGRSRPEHPSANGR-CRPEAKELQGRAEPKARFDRRNMNKYCMFHGDHDHTTRECIQLRDEIETLIREGYL

A0A6J1DWY0 uncharacterized protein LOC1110252933.2e-3737.66Show/hide
Query:  EGSYQTSQKKAENEDIERLIGQEGSVFTDEIMRGEVPHKFKVPNFPQYDGKKDPKQHLDAYQTWMDFHGANEATR----------------------SIG
        E S +    K +  D+E L+ Q  S FT+EIMR +VP KFK+P   Q+D   DP  HLDAY+ WMD +G +EA R                      SI 
Subjt:  EGSYQTSQKKAENEDIERLIGQEGSVFTDEIMRGEVPHKFKVPNFPQYDGKKDPKQHLDAYQTWMDFHGANEATR----------------------SIG

Query:  SFKELARAFVTQFLGARSRQKPQINLLTVKQGPREGLRDYINRFSNEVLQVEGYDDGVALTA--------------------VISEELLRSKQ-------
        SFK LARAFVTQF+G R R +P   LLT+KQ   E LRDY+ RF+ E LQVEG  D V+L A                      SE L R+++       
Subjt:  SFKELARAFVTQFLGARSRQKPQINLLTVKQGPREGLRDYINRFSNEVLQVEGYDDGVALTA--------------------VISEELLRSKQ-------

Query:  --EERESRGMSISDRRREYRGKRHQG---EGRGRSRPEHPSAN-----------GRCRPEAKE---LQGRAEPKARFDRRNMNKYCMFHGDHDHTTRECI
           +RE  G   +D +RE  G + QG   E R RS  + P               +   E K+   L+     KA   +R+  +YC+FH DH H T++C 
Subjt:  --EERESRGMSISDRRREYRGKRHQG---EGRGRSRPEHPSAN-----------GRCRPEAKE---LQGRAEPKARFDRRNMNKYCMFHGDHDHTTRECI

Query:  QLRDEIETLIREGYLK
         L++E+E LIR GYLK
Subjt:  QLRDEIETLIREGYLK

A0A6J1E1E7 uncharacterized protein LOC1110255482.1e-2538.66Show/hide
Query:  EGSYQTSQKKAENEDIERLIGQEGSVFTDEIMRGEVPHKFKVPNFPQYDGKKDPKQHLDAYQTWMDFHGANEATR----------------------SIG
        E S +   +K +  D+E L+GQ  S FT+EIMR +VP KFK+P    +DG  +P  HLDAY+ WMD +G ++A R                      SI 
Subjt:  EGSYQTSQKKAENEDIERLIGQEGSVFTDEIMRGEVPHKFKVPNFPQYDGKKDPKQHLDAYQTWMDFHGANEATR----------------------SIG

Query:  SFKELARAFVTQFLGARSRQKPQINLLTVKQGPREGLRDYINRFSNEVLQVEGYDDGVALTAVIS---EELLR-----------SKQEERESRGMSISD-
        SFK LARAF+TQF+G R R +P   LLT+KQ   E L DY+ RF+ E LQ+EG  D V+L A +S   +E L            S+   R  R MS S+ 
Subjt:  SFKELARAFVTQFLGARSRQKPQINLLTVKQGPREGLRDYINRFSNEVLQVEGYDDGVALTAVIS---EELLR-----------SKQEERESRGMSISD-

Query:  --RRREYRGKR-HQGEGRGRSRPEHPSANGRCRPEAKE
           +RE  GKR  Q   R   +P+      R R   K+
Subjt:  --RRREYRGKR-HQGEGRGRSRPEHPSANGRCRPEAKE

A0A7J0FPQ8 Ribonuclease H4.4e-2330.96Show/hide
Query:  IERLIGQEGSVFTDEIMRGEVPHKFKVP-NFPQYDGKKDPKQHLDAYQTWMDFHGANE----------------------ATRSIGSFKELARAFVTQFL
        ++ L+ Q    FT+ ++R  +  KFK+P     Y+GK DP  HLD+Y++ M   G ++                      +  ++ SF EL+R FV  F+
Subjt:  IERLIGQEGSVFTDEIMRGEVPHKFKVP-NFPQYDGKKDPKQHLDAYQTWMDFHGANE----------------------ATRSIGSFKELARAFVTQFL

Query:  GARSRQKPQINLLTVKQGPREGLRDYINRFSNEVLQVEG-YDDGVALTAVISEELLRSKQEER---ESRGMSISDRRREY----------RGKRHQGEGR
          R+RQK   +L TV Q   E L+D++ RF+  VL VE   D   A   + +EEL  +K+  R   + +      RR +Y          R  +     R
Subjt:  GARSRQKPQINLLTVKQGPREGLRDYINRFSNEVLQVEG-YDDGVALTAVISEELLRSKQEER---ESRGMSISDRRREY----------RGKRHQGEGR

Query:  GRSRPEHPSAN--------GRCRPEAKE---LQGRAEPKARFDRRNMNKYCMFHGDHDHTTRECIQLRDEIETLIREGYLK
         R+ P  P  N         +   E K    ++   + K    RRN NKYC FH DH H T +C QLR++I  LI+ GYL+
Subjt:  GRSRPEHPSAN--------GRCRPEAKE---LQGRAEPKARFDRRNMNKYCMFHGDHDHTTRECIQLRDEIETLIREGYLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGGATGGCTAAAAGGGGAAGGTAGTTACCAAACCTCCCAAAAGAAGGCAGAGAACGAGGATATAGAGAGATTGATTGGGCAGGAGGGGTCAGTCTTCACCGATGA
GATAATGAGAGGGGAGGTGCCGCACAAATTCAAAGTACCAAACTTCCCGCAGTATGATGGGAAGAAGGATCCGAAACAGCACCTAGATGCATACCAGACTTGGATGGACT
TTCATGGGGCGAACGAAGCAACAAGGTCAATAGGCTCGTTCAAAGAACTGGCCCGAGCGTTTGTTACGCAATTCCTAGGAGCTCGAAGTCGACAGAAGCCTCAAATCAAC
TTGCTGACAGTAAAGCAGGGGCCTCGGGAGGGCCTGAGGGATTATATTAACAGATTTAGCAACGAAGTTTTGCAGGTGGAGGGTTACGATGATGGAGTTGCTTTGACTGC
TGTGATTTCAGAGGAGCTGTTGAGATCCAAGCAGGAAGAAAGAGAGAGTCGGGGGATGTCAATATCAGACCGGCGTCGGGAATACAGGGGAAAGAGGCACCAGGGTGAGG
GAAGAGGCCGGAGCCGACCTGAGCACCCCTCGGCCAATGGCCGATGCCGACCAGAAGCCAAGGAATTGCAAGGTCGTGCGGAGCCTAAGGCCAGATTCGACAGGAGAAAC
ATGAACAAATATTGCATGTTCCACGGAGATCACGACCATACAACCAGAGAATGCATCCAGTTACGAGATGAGATAGAAACCCTAATCCGAGAAGGTTACCTCAAGTCCCG
GAGTCACCATTTCATGGTCCGGTCTTATGCAAACTCATTGCATAGTATACCCCCGCTCGCATGTCTACTACATGGACGCTTAGGATCAATACGTCTGTATCAAATACAAA
GCGGGCCGTATCACATAGTGTTACCAGGATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGGATGGCTAAAAGGGGAAGGTAGTTACCAAACCTCCCAAAAGAAGGCAGAGAACGAGGATATAGAGAGATTGATTGGGCAGGAGGGGTCAGTCTTCACCGATGA
GATAATGAGAGGGGAGGTGCCGCACAAATTCAAAGTACCAAACTTCCCGCAGTATGATGGGAAGAAGGATCCGAAACAGCACCTAGATGCATACCAGACTTGGATGGACT
TTCATGGGGCGAACGAAGCAACAAGGTCAATAGGCTCGTTCAAAGAACTGGCCCGAGCGTTTGTTACGCAATTCCTAGGAGCTCGAAGTCGACAGAAGCCTCAAATCAAC
TTGCTGACAGTAAAGCAGGGGCCTCGGGAGGGCCTGAGGGATTATATTAACAGATTTAGCAACGAAGTTTTGCAGGTGGAGGGTTACGATGATGGAGTTGCTTTGACTGC
TGTGATTTCAGAGGAGCTGTTGAGATCCAAGCAGGAAGAAAGAGAGAGTCGGGGGATGTCAATATCAGACCGGCGTCGGGAATACAGGGGAAAGAGGCACCAGGGTGAGG
GAAGAGGCCGGAGCCGACCTGAGCACCCCTCGGCCAATGGCCGATGCCGACCAGAAGCCAAGGAATTGCAAGGTCGTGCGGAGCCTAAGGCCAGATTCGACAGGAGAAAC
ATGAACAAATATTGCATGTTCCACGGAGATCACGACCATACAACCAGAGAATGCATCCAGTTACGAGATGAGATAGAAACCCTAATCCGAGAAGGTTACCTCAAGTCCCG
GAGTCACCATTTCATGGTCCGGTCTTATGCAAACTCATTGCATAGTATACCCCCGCTCGCATGTCTACTACATGGACGCTTAGGATCAATACGTCTGTATCAAATACAAA
GCGGGCCGTATCACATAGTGTTACCAGGATAA
Protein sequenceShow/hide protein sequence
MSGWLKGEGSYQTSQKKAENEDIERLIGQEGSVFTDEIMRGEVPHKFKVPNFPQYDGKKDPKQHLDAYQTWMDFHGANEATRSIGSFKELARAFVTQFLGARSRQKPQIN
LLTVKQGPREGLRDYINRFSNEVLQVEGYDDGVALTAVISEELLRSKQEERESRGMSISDRRREYRGKRHQGEGRGRSRPEHPSANGRCRPEAKELQGRAEPKARFDRRN
MNKYCMFHGDHDHTTRECIQLRDEIETLIREGYLKSRSHHFMVRSYANSLHSIPPLACLLHGRLGSIRLYQIQSGPYHIVLPG