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Lag0037438 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0037438
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptiontranscription elongation factor B polypeptide 3
Genome locationchr2:6267598..6270785
RNA-Seq ExpressionLag0037438
SyntenyLag0037438
Gene Ontology termsGO:0006368 - transcription elongation from RNA polymerase II promoter (biological process)
GO:0070449 - elongin complex (cellular component)
InterPro domainsIPR010684 - RNA polymerase II transcription factor SIII, subunit A


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582214.1 hypothetical protein SDJN03_22216, partial [Cucurbita argyrosperma subsp. sororia]2.0e-4356.32Show/hide
Query:  INEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDEANLVIERLQQKKESSFKWKQMYEAKMKELEKKER
        +N+AIDS+RF+GDVGQ DL+FLEHILPHCTVDQLMH+E CSKGRDL+PVTNKLWK FYE+KFG+D  N V+ER++ K+  SF+WKQMYE KMKELE+K  
Subjt:  INEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDEANLVIERLQQKKESSFKWKQMYEAKMKELEKKER

Query:  ESGRRLIQNYQKEKARKRSRQIQIIEVLPSSS-NKKRKYERRV-GFECKTNTK-------SNVLKKTKRE---------IALFRRNVVQK
        E  +R IQN + EK RK+SRQ++I E+ PSS   KK K + ++      TN K       S +LKK ++E         +  FRRN +QK
Subjt:  ESGRRLIQNYQKEKARKRSRQIQIIEVLPSSS-NKKRKYERRV-GFECKTNTK-------SNVLKKTKRE---------IALFRRNVVQK

KAG6582215.1 40S ribosomal protein S21-1, partial [Cucurbita argyrosperma subsp. sororia]4.6e-4356.08Show/hide
Query:  INEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDEANLVIERLQQKKESSFKWKQMYEAKMKELEKKER
        +N+AIDS+R +GDVGQTDL+FLEHILPHCTVDQLMH+E CSKGRDL+PVTNKLWK FYERKFG D  N V+ER++ K+  SF+WKQMYE KMK LE+K  
Subjt:  INEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDEANLVIERLQQKKESSFKWKQMYEAKMKELEKKER

Query:  ESGRRLIQNYQKEKARKRSRQIQIIEVLPSSS--NKKRKYERRVGFECKTNTK-------SNVLKKTKRE---------IALFRRNVVQ
        E  +R IQN + EKARK+SRQ++I E+LPSS    K R + +        N K       S +LKK ++E         +  FRRN +Q
Subjt:  ESGRRLIQNYQKEKARKRSRQIQIIEVLPSSS--NKKRKYERRVGFECKTNTK-------SNVLKKTKRE---------IALFRRNVVQ

XP_022979571.1 uncharacterized protein LOC111479252 [Cucurbita maxima]6.4e-4556.32Show/hide
Query:  INEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDEANLVIERLQQKKESSFKWKQMYEAKMKELEKKER
        +N+AIDS+RF+GDVGQTDL+FLEHILPHCTVDQLMH+E CSKGRDL+P+TNKLWK FYERKFGKD+ N V++R++ K+  SF+WKQMYE K+KELE K  
Subjt:  INEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDEANLVIERLQQKKESSFKWKQMYEAKMKELEKKER

Query:  ESGRRLIQNYQKEKARKRSRQIQIIEVLPSSS-NKKRKYERRVGFECKTNTK--------SNVLKKTKRE---------IALFRRNVVQK
        E  +R I+N Q EKARK+SRQ++I E+ PSS   KK K   +V      N          S +LKK ++E         +  FRRN +QK
Subjt:  ESGRRLIQNYQKEKARKRSRQIQIIEVLPSSS-NKKRKYERRVGFECKTNTK--------SNVLKKTKRE---------IALFRRNVVQK

XP_038885873.1 uncharacterized protein LOC120076176 [Benincasa hispida]4.4e-4661.45Show/hide
Query:  MSQQVSKTIIPSSNNDAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDEANLVIERLQQKKESSF
        M ++VSK      ++D+ INEAIDS+RF+GDVG TDLH LE ILPHCTVDQLMH+E  SKGRDL+PVT+KLWKNFYE+KFGK++++LVI++++ KKE SF
Subjt:  MSQQVSKTIIPSSNNDAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDEANLVIERLQQKKESSF

Query:  KWKQMYEAKMKELEKKERESGRRLIQNYQKEKARKRSRQIQIIEVLPSSSNKKRKYERRVGFECKTNTKSNVLKKTKRE
        KWKQ+YEAKM+ LEKK  E   R  QN QKE ARK+SR+I   E + SS+NKKR+ E  +  EC T T+S +LKK  RE
Subjt:  KWKQMYEAKMKELEKKERESGRRLIQNYQKEKARKRSRQIQIIEVLPSSSNKKRKYERRVGFECKTNTKSNVLKKTKRE

XP_038900478.1 transcription elongation factor B polypeptide 3-like isoform X1 [Benincasa hispida]2.0e-4354.89Show/hide
Query:  DAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDEANLVIERLQQKKESSFKWKQMYEAKMKELEK
        D  +N+AID++RF+GDVG+TD+H L+ ILPHCTVDQLMHVEK S+GRDL+P+T+KLWK FYER+FGK+    VIER++QK+  +F+W Q+YEAKMK++EK
Subjt:  DAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDEANLVIERLQQKKESSFKWKQMYEAKMKELEK

Query:  KERESGRRLIQNYQKEKARKRSRQIQIIEVLPSSSNKKRKYERRVGFECKTNTKSNVLKKTK---------REIALFRRNVVQK
         E ++  R+ Q+YQKE ARK+SRQIQI   +P SSNK+       G+    NTK+ +LKK K         + I  +RRN VQK
Subjt:  KERESGRRLIQNYQKEKARKRSRQIQIIEVLPSSSNKKRKYERRVGFECKTNTKSNVLKKTK---------REIALFRRNVVQK

TrEMBL top hitse value%identityAlignment
A0A1S4E1U0 transcription elongation factor B polypeptide 3 isoform X22.9e-4354.89Show/hide
Query:  DAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDEANLVIERLQQKKESSFKWKQMYEAKMKELEK
        D  +N+AID++RF+GDVG+TD+H LE ILPHCTVDQLMHVEK S+GRDL+PVT+KLWK FYER+FGK+    VIER++QK+  +F+W Q+YEAKM+++EK
Subjt:  DAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDEANLVIERLQQKKESSFKWKQMYEAKMKELEK

Query:  KERESGRRLIQNYQKEKARKRSRQIQIIEVLPSSSNKKRKYERRVGFECKTNTKSNVLKKTK---------REIALFRRNVVQK
         E ++  R+ Q+Y KE ARK+SRQIQI   +P SSNK+       G+    NTK+ +LKK K         + I  +RRN VQK
Subjt:  KERESGRRLIQNYQKEKARKRSRQIQIIEVLPSSSNKKRKYERRVGFECKTNTKSNVLKKTK---------REIALFRRNVVQK

A0A5D3BGR1 Transcription elongation factor B polypeptide 3 isoform X22.9e-4354.89Show/hide
Query:  DAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDEANLVIERLQQKKESSFKWKQMYEAKMKELEK
        D  +N+AID++RF+GDVG+TD+H LE ILPHCTVDQLMHVEK S+GRDL+PVT+KLWK FYER+FGK+    VIER++QK+  +F+W Q+YEAKM+++EK
Subjt:  DAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDEANLVIERLQQKKESSFKWKQMYEAKMKELEK

Query:  KERESGRRLIQNYQKEKARKRSRQIQIIEVLPSSSNKKRKYERRVGFECKTNTKSNVLKKTK---------REIALFRRNVVQK
         E ++  R+ Q+Y KE ARK+SRQIQI   +P SSNK+       G+    NTK+ +LKK K         + I  +RRN VQK
Subjt:  KERESGRRLIQNYQKEKARKRSRQIQIIEVLPSSSNKKRKYERRVGFECKTNTKSNVLKKTK---------REIALFRRNVVQK

A0A6J1G8K1 transcription elongation factor B polypeptide 3 isoform X22.9e-4356.52Show/hide
Query:  DAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDEANLVIERLQQKKESSFKWKQMYEAKMKELEK
        D  + +AID++RF+GDVG+TDLH LE ILPHCTVDQLMHVEK S+GRDL+PVT+KLWK FYER+FG++  N+V ER+ QKK+ +F+W Q+YEAKMK++EK
Subjt:  DAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDEANLVIERLQQKKESSFKWKQMYEAKMKELEK

Query:  KERESGRRLIQNYQKEKARKRSRQIQIIEVLPSSSNKKRKYERRVGFECKTNTKSNVLKKTK---------REIALFRRNVVQK
         E E+  R+ Q+Y KE ARK+SRQIQI   +P +SN KR +    G    TNTK+ +LKK+K         + I  +RRN VQK
Subjt:  KERESGRRLIQNYQKEKARKRSRQIQIIEVLPSSSNKKRKYERRVGFECKTNTKSNVLKKTK---------REIALFRRNVVQK

A0A6J1I4W9 transcription elongation factor B polypeptide 3 isoform X22.9e-4356.52Show/hide
Query:  DAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDEANLVIERLQQKKESSFKWKQMYEAKMKELEK
        D  + +AID++RF+GDVG+TDLH LE ILPHCTVDQLMHVEK S+GRDL+PVT+KLWK FYER+FG++  N+V ER+ QKK+ +F+W Q+YEAKMK++EK
Subjt:  DAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDEANLVIERLQQKKESSFKWKQMYEAKMKELEK

Query:  KERESGRRLIQNYQKEKARKRSRQIQIIEVLPSSSNKKRKYERRVGFECKTNTKSNVLKKTK---------REIALFRRNVVQK
         E E+  R+ Q+Y KE ARK+SRQIQI   +P +SN KR +    G    TNTK+ +LKK+K         + I  +RRN VQK
Subjt:  KERESGRRLIQNYQKEKARKRSRQIQIIEVLPSSSNKKRKYERRVGFECKTNTKSNVLKKTK---------REIALFRRNVVQK

A0A6J1IR58 uncharacterized protein LOC1114792523.1e-4556.32Show/hide
Query:  INEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDEANLVIERLQQKKESSFKWKQMYEAKMKELEKKER
        +N+AIDS+RF+GDVGQTDL+FLEHILPHCTVDQLMH+E CSKGRDL+P+TNKLWK FYERKFGKD+ N V++R++ K+  SF+WKQMYE K+KELE K  
Subjt:  INEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDEANLVIERLQQKKESSFKWKQMYEAKMKELEKKER

Query:  ESGRRLIQNYQKEKARKRSRQIQIIEVLPSSS-NKKRKYERRVGFECKTNTK--------SNVLKKTKRE---------IALFRRNVVQK
        E  +R I+N Q EKARK+SRQ++I E+ PSS   KK K   +V      N          S +LKK ++E         +  FRRN +QK
Subjt:  ESGRRLIQNYQKEKARKRSRQIQIIEVLPSSS-NKKRKYERRVGFECKTNTK--------SNVLKKTKRE---------IALFRRNVVQK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G42780.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).2.6e-2837.17Show/hide
Query:  PSSNNDAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDEANLVIERLQQKKESSFKWKQMYEAKM
        P S  D  + +AID+V++IG VG  D   LE IL HCT++QL H+E  +   DLSP+T+K WK FY++ +G+++   +IE L+  K + FKW+ +YE K+
Subjt:  PSSNNDAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDEANLVIERLQQKKESSFKWKQMYEAKM

Query:  KELEKKERESGRRLIQNYQKEKARKRSRQIQIIEVLPSSSNKKRKYERRVGFECKTNTKSNVLKKTK---------REIALFRRNVVQKKF
          +++KE+E G RL + Y+ E  RK+SRQ ++    P S  K+  +          + KSN++KK K         + +   +RN +QK F
Subjt:  KELEKKERESGRRLIQNYQKEKARKRSRQIQIIEVLPSSSNKKRKYERRVGFECKTNTKSNVLKKTK---------REIALFRRNVVQKKF

AT2G42780.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684).2.6e-2837.17Show/hide
Query:  PSSNNDAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDEANLVIERLQQKKESSFKWKQMYEAKM
        P S  D  + +AID+V++IG VG  D   LE IL HCT++QL H+E  +   DLSP+T+K WK FY++ +G+++   +IE L+  K + FKW+ +YE K+
Subjt:  PSSNNDAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDEANLVIERLQQKKESSFKWKQMYEAKM

Query:  KELEKKERESGRRLIQNYQKEKARKRSRQIQIIEVLPSSSNKKRKYERRVGFECKTNTKSNVLKKTK---------REIALFRRNVVQKKF
          +++KE+E G RL + Y+ E  RK+SRQ ++    P S  K+  +          + KSN++KK K         + +   +RN +QK F
Subjt:  KELEKKERESGRRLIQNYQKEKARKRSRQIQIIEVLPSSSNKKRKYERRVGFECKTNTKSNVLKKTK---------REIALFRRNVVQKKF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGCGTGAAGCCCCTACCGCGCCCCCAGTGTCCGAGTTCGAAGCCTACAAAAGTTTTAGAAGTGTTTATAGCGAGTGGAAGATCAACTGGCTTGAAGCTATGACAAC
GTGTGAAGAATTGAAAGTCATTCCTTTAGATTCCACTACGATCCAAGTGGAAATCGATGCTCTGCAAATCGTGAGATTCTTAAACCGCAAAGATGAGGACTTTACAGAAC
TTTTCCACTTCATTGATGAAGCTCAATCCCTAATGAAGGACAATAATATTGATACTGTGGCTAGACCTAATAGTGCCGATATGTCTCAACAAGTAAGCAAAACAATTATT
CCATCGTCAAACAACGACGCTTGGATCAACGAAGCCATCGATAGTGTGAGGTTCATTGGGGATGTTGGCCAAACCGATTTACATTTTCTAGAGCACATTCTGCCACACTG
CACCGTTGACCAATTGATGCACGTGGAGAAATGTTCAAAAGGAAGAGATCTCAGTCCAGTAACCAACAAATTGTGGAAAAATTTCTATGAACGAAAGTTTGGTAAAGATG
AAGCCAATCTTGTAATTGAGAGATTGCAGCAGAAAAAAGAGTCGTCGTTTAAGTGGAAGCAAATGTATGAAGCGAAGATGAAGGAATTGGAAAAGAAGGAGAGGGAAAGT
GGAAGGCGATTGATACAAAATTACCAAAAAGAAAAGGCTCGAAAACGAAGTCGTCAAATACAGATTATTGAGGTTCTTCCCTCTTCGAGTAATAAGAAACGAAAATATGA
AAGAAGGGTCGGATTTGAATGCAAGACTAATACTAAGAGCAATGTGTTAAAGAAGACAAAGAGAGAAATAGCATTATTTCGAAGGAATGTAGTGCAAAAGAAATTTGTTT
TGGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATGCGTGAAGCCCCTACCGCGCCCCCAGTGTCCGAGTTCGAAGCCTACAAAAGTTTTAGAAGTGTTTATAGCGAGTGGAAGATCAACTGGCTTGAAGCTATGACAAC
GTGTGAAGAATTGAAAGTCATTCCTTTAGATTCCACTACGATCCAAGTGGAAATCGATGCTCTGCAAATCGTGAGATTCTTAAACCGCAAAGATGAGGACTTTACAGAAC
TTTTCCACTTCATTGATGAAGCTCAATCCCTAATGAAGGACAATAATATTGATACTGTGGCTAGACCTAATAGTGCCGATATGTCTCAACAAGTAAGCAAAACAATTATT
CCATCGTCAAACAACGACGCTTGGATCAACGAAGCCATCGATAGTGTGAGGTTCATTGGGGATGTTGGCCAAACCGATTTACATTTTCTAGAGCACATTCTGCCACACTG
CACCGTTGACCAATTGATGCACGTGGAGAAATGTTCAAAAGGAAGAGATCTCAGTCCAGTAACCAACAAATTGTGGAAAAATTTCTATGAACGAAAGTTTGGTAAAGATG
AAGCCAATCTTGTAATTGAGAGATTGCAGCAGAAAAAAGAGTCGTCGTTTAAGTGGAAGCAAATGTATGAAGCGAAGATGAAGGAATTGGAAAAGAAGGAGAGGGAAAGT
GGAAGGCGATTGATACAAAATTACCAAAAAGAAAAGGCTCGAAAACGAAGTCGTCAAATACAGATTATTGAGGTTCTTCCCTCTTCGAGTAATAAGAAACGAAAATATGA
AAGAAGGGTCGGATTTGAATGCAAGACTAATACTAAGAGCAATGTGTTAAAGAAGACAAAGAGAGAAATAGCATTATTTCGAAGGAATGTAGTGCAAAAGAAATTTGTTT
TGGTTTAA
Protein sequenceShow/hide protein sequence
MMREAPTAPPVSEFEAYKSFRSVYSEWKINWLEAMTTCEELKVIPLDSTTIQVEIDALQIVRFLNRKDEDFTELFHFIDEAQSLMKDNNIDTVARPNSADMSQQVSKTII
PSSNNDAWINEAIDSVRFIGDVGQTDLHFLEHILPHCTVDQLMHVEKCSKGRDLSPVTNKLWKNFYERKFGKDEANLVIERLQQKKESSFKWKQMYEAKMKELEKKERES
GRRLIQNYQKEKARKRSRQIQIIEVLPSSSNKKRKYERRVGFECKTNTKSNVLKKTKREIALFRRNVVQKKFVLV