; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0037460 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0037460
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description50S ribosomal protein 6, chloroplastic-like
Genome locationchr2:6525831..6526154
RNA-Seq ExpressionLag0037460
SyntenyLag0037460
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR020526 - Ribosomal protein L6, chloroplast


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591720.1 50S ribosomal protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.1e-4488.79Show/hide
Query:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYAPLPPLPPDWTLLSSVSGDDSVEVASSIASSA
        MSISTFFG RISVPPLLNSSASK APCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVY PLPPLPPDWT++SS+S D+ VEVA+S ASSA
Subjt:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYAPLPPLPPDWTLLSSVSGDDSVEVASSIASSA

Query:  QAPPTSE
        QAPPT+E
Subjt:  QAPPTSE

XP_011652886.1 50S ribosomal protein 6, chloroplastic [Cucumis sativus]4.3e-4488.79Show/hide
Query:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYAPLPPLPPDWTLLSSVSGDDSVEVASSIASSA
        MSISTF GC+ISVPPLLNSSASKAAPCS GNL+IECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVY PLPPLPPDWTL+SSVSGD++VE+A SI+SSA
Subjt:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYAPLPPLPPDWTLLSSVSGDDSVEVASSIASSA

Query:  QAPPTSE
        QAP TSE
Subjt:  QAPPTSE

XP_022936242.1 50S ribosomal protein 6, chloroplastic-like [Cucurbita moschata]3.9e-4589.72Show/hide
Query:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYAPLPPLPPDWTLLSSVSGDDSVEVASSIASSA
        MSIST+FG RISVPPLLNSSASK APCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVY PLPPLPPDWT +SS+S D+ VEVASSIASSA
Subjt:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYAPLPPLPPDWTLLSSVSGDDSVEVASSIASSA

Query:  QAPPTSE
        QAPPT+E
Subjt:  QAPPTSE

XP_022975752.1 50S ribosomal protein 6, chloroplastic [Cucurbita maxima]8.8e-4589.72Show/hide
Query:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYAPLPPLPPDWTLLSSVSGDDSVEVASSIASSA
        MSISTF G RISVPPLLNSSASK APCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVY PLPPLPPDWT++SS+S D+ VEVASSIASSA
Subjt:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYAPLPPLPPDWTLLSSVSGDDSVEVASSIASSA

Query:  QAPPTSE
        QAPPT+E
Subjt:  QAPPTSE

XP_023536142.1 50S ribosomal protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo]1.0e-4590.65Show/hide
Query:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYAPLPPLPPDWTLLSSVSGDDSVEVASSIASSA
        MSISTFFG RISVPPLLNSSASK APCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVY PLPPLPPDWT++SS+S D+ VEVASSIASSA
Subjt:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYAPLPPLPPDWTLLSSVSGDDSVEVASSIASSA

Query:  QAPPTSE
        QAPPT+E
Subjt:  QAPPTSE

TrEMBL top hitse value%identityAlignment
A0A0A0LHS7 Uncharacterized protein2.1e-4488.79Show/hide
Query:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYAPLPPLPPDWTLLSSVSGDDSVEVASSIASSA
        MSISTF GC+ISVPPLLNSSASKAAPCS GNL+IECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVY PLPPLPPDWTL+SSVSGD++VE+A SI+SSA
Subjt:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYAPLPPLPPDWTLLSSVSGDDSVEVASSIASSA

Query:  QAPPTSE
        QAP TSE
Subjt:  QAPPTSE

A0A1S3CQF4 50S ribosomal protein 6, chloroplastic2.3e-4386.92Show/hide
Query:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYAPLPPLPPDWTLLSSVSGDDSVEVASSIASSA
        MSISTF GC+ISVPPLLNSSASKAAPCSGGNL IECSSRPNKKATAHHMKTRP+KSQPWDIRRKPTVY PLPPLPPDWTL+SSVSGD++VE+ S+ +SSA
Subjt:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYAPLPPLPPDWTLLSSVSGDDSVEVASSIASSA

Query:  QAPPTSE
        QAP TSE
Subjt:  QAPPTSE

A0A5A7TB88 50S ribosomal protein 62.3e-4386.92Show/hide
Query:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYAPLPPLPPDWTLLSSVSGDDSVEVASSIASSA
        MSISTF GC+ISVPPLLNSSASKAAPCSGGNL IECSSRPNKKATAHHMKTRP+KSQPWDIRRKPTVY PLPPLPPDWTL+SSVSGD++VE+ S+ +SSA
Subjt:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYAPLPPLPPDWTLLSSVSGDDSVEVASSIASSA

Query:  QAPPTSE
        QAP TSE
Subjt:  QAPPTSE

A0A6J1F7W7 50S ribosomal protein 6, chloroplastic-like1.9e-4589.72Show/hide
Query:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYAPLPPLPPDWTLLSSVSGDDSVEVASSIASSA
        MSIST+FG RISVPPLLNSSASK APCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVY PLPPLPPDWT +SS+S D+ VEVASSIASSA
Subjt:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYAPLPPLPPDWTLLSSVSGDDSVEVASSIASSA

Query:  QAPPTSE
        QAPPT+E
Subjt:  QAPPTSE

A0A6J1IDX3 50S ribosomal protein 6, chloroplastic4.2e-4589.72Show/hide
Query:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYAPLPPLPPDWTLLSSVSGDDSVEVASSIASSA
        MSISTF G RISVPPLLNSSASK APCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVY PLPPLPPDWT++SS+S D+ VEVASSIASSA
Subjt:  MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYAPLPPLPPDWTLLSSVSGDDSVEVASSIASSA

Query:  QAPPTSE
        QAPPT+E
Subjt:  QAPPTSE

SwissProt top hitse value%identityAlignment
P11892 50S ribosomal protein 6, chloroplastic3.9e-1959.04Show/hide
Query:  SISTFFGCRISVPP---LLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYAPLPPLPPDWTLL
        S+S+ FGC +S+ P   L N +       + G L+IECSSRP KK+TAHHMKTRPRKS+  D  RKPTVYAPLPPLPPD+T++
Subjt:  SISTFFGCRISVPP---LLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYAPLPPLPPDWTLL

P82411 50S ribosomal protein 6, chloroplastic9.2e-2148.7Show/hide
Query:  MSISTFFGCR-ISVPPLLNSSA----------SKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYAPLPPLPPDWTLLSSV--SGD
        MS+S  FG R +++P +L +S+          S    C GG + IECSSRP KK TAHHMKTRP+K+  WDI+R P VY PLPPLP +WT++SS     D
Subjt:  MSISTFFGCR-ISVPPLLNSSA----------SKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYAPLPPLPPDWTLLSSV--SGD

Query:  DSVEVASSIASSAQA
         S    SS A  AQ+
Subjt:  DSVEVASSIASSAQA

Q9FKP0 50S ribosomal protein 6, chloroplastic3.9e-1950Show/hide
Query:  MSISTFFGCRI----SVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYAPLPPLPPDWTLLSSVSGDDSVEVASSI
        MS+S  FG  I    + P L      K     G  +VIECSSRP KK+TAHH KTRP+K+QPWDI+RKPTVYAPLPPLP +W+  +  S D     A+  
Subjt:  MSISTFFGCRI----SVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYAPLPPLPPDWTLLSSVSGDDSVEVASSI

Query:  ASSAQA
          S  A
Subjt:  ASSAQA

Arabidopsis top hitse value%identityAlignment
AT5G17870.1 plastid-specific 50S ribosomal protein 62.7e-2050Show/hide
Query:  MSISTFFGCRI----SVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYAPLPPLPPDWTLLSSVSGDDSVEVASSI
        MS+S  FG  I    + P L      K     G  +VIECSSRP KK+TAHH KTRP+K+QPWDI+RKPTVYAPLPPLP +W+  +  S D     A+  
Subjt:  MSISTFFGCRI----SVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYAPLPPLPPDWTLLSSVSGDDSVEVASSI

Query:  ASSAQA
          S  A
Subjt:  ASSAQA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATTTCGACCTTCTTCGGCTGTAGGATTTCGGTTCCGCCTTTGCTGAATTCATCTGCAAGCAAAGCAGCTCCATGTTCCGGCGGGAATTTGGTGATTGAGTGCTC
GTCGAGGCCGAACAAGAAGGCGACTGCACATCACATGAAAACTAGGCCGCGGAAATCTCAGCCGTGGGACATTCGGCGCAAGCCGACTGTGTATGCTCCTCTGCCGCCGC
TTCCACCGGACTGGACGTTACTTTCATCAGTCTCCGGTGACGACAGTGTCGAGGTAGCCTCTTCGATTGCTTCGTCTGCACAAGCACCGCCTACTAGCGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGATTTCGACCTTCTTCGGCTGTAGGATTTCGGTTCCGCCTTTGCTGAATTCATCTGCAAGCAAAGCAGCTCCATGTTCCGGCGGGAATTTGGTGATTGAGTGCTC
GTCGAGGCCGAACAAGAAGGCGACTGCACATCACATGAAAACTAGGCCGCGGAAATCTCAGCCGTGGGACATTCGGCGCAAGCCGACTGTGTATGCTCCTCTGCCGCCGC
TTCCACCGGACTGGACGTTACTTTCATCAGTCTCCGGTGACGACAGTGTCGAGGTAGCCTCTTCGATTGCTTCGTCTGCACAAGCACCGCCTACTAGCGAGTAA
Protein sequenceShow/hide protein sequence
MSISTFFGCRISVPPLLNSSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYAPLPPLPPDWTLLSSVSGDDSVEVASSIASSAQAPPTSE