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Lag0037470 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0037470
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionEndoribonuclease YBEY, chloroplastic
Genome locationchr2:6581041..6581569
RNA-Seq ExpressionLag0037470
SyntenyLag0037470
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0009658 - chloroplast organization (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:1901259 - chloroplast rRNA processing (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0004222 - metalloendopeptidase activity (molecular function)
GO:0004521 - endoribonuclease activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR002036 - Endoribonuclease YbeY
IPR023214 - HAD superfamily
IPR036412 - HAD-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004136229.1 endoribonuclease YBEY, chloroplastic [Cucumis sativus]9.9e-2098.18Show/hide
Query:  VMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVADVIYRYAF
        VMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVA+VIYRYAF
Subjt:  VMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVADVIYRYAF

XP_008466080.1 PREDICTED: uncharacterized protein LOC103503611 [Cucumis melo]9.9e-2098.18Show/hide
Query:  VMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVADVIYRYAF
        VMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVA+VIYRYAF
Subjt:  VMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVADVIYRYAF

XP_022138817.1 uncharacterized protein LOC111009890 [Momordica charantia]7.6e-2096.36Show/hide
Query:  VMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVADVIYRYAF
        VMAIGDGENDIEMLELASLGIALSNGSEKTKA+AN+IGPSNDEDGVADVIYRYAF
Subjt:  VMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVADVIYRYAF

XP_034683095.1 endoribonuclease YBEY, chloroplastic [Vitis riparia]2.2e-1996.36Show/hide
Query:  VMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVADVIYRYAF
        VMAIGDGENDIEMLELASLGIALSNGSEKTKAVAN+IGPSNDEDGVAD IYRYAF
Subjt:  VMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVADVIYRYAF

XP_038899849.1 endoribonuclease YBEY, chloroplastic [Benincasa hispida]3.4e-20100Show/hide
Query:  VMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVADVIYRYAF
        VMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVADVIYRYAF
Subjt:  VMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVADVIYRYAF

TrEMBL top hitse value%identityAlignment
A0A0A0LJV1 Uncharacterized protein4.8e-2098.18Show/hide
Query:  VMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVADVIYRYAF
        VMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVA+VIYRYAF
Subjt:  VMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVADVIYRYAF

A0A1S3CQE9 uncharacterized protein LOC1035036114.8e-2098.18Show/hide
Query:  VMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVADVIYRYAF
        VMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVA+VIYRYAF
Subjt:  VMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVADVIYRYAF

A0A438H3U6 Endoribonuclease YBEY, chloroplastic1.1e-1996.36Show/hide
Query:  VMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVADVIYRYAF
        VMAIGDGENDIEMLELASLGIALSNGSEKTKAVAN+IGPSNDEDGVAD IYRYAF
Subjt:  VMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVADVIYRYAF

A0A6J1CCA3 uncharacterized protein LOC1110098903.7e-2096.36Show/hide
Query:  VMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVADVIYRYAF
        VMAIGDGENDIEMLELASLGIALSNGSEKTKA+AN+IGPSNDEDGVADVIYRYAF
Subjt:  VMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVADVIYRYAF

A5B4E1 Uncharacterized protein1.1e-1996.36Show/hide
Query:  VMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVADVIYRYAF
        VMAIGDGENDIEMLELASLGIALSNGSEKTKAVAN+IGPSNDEDGVAD IYRYAF
Subjt:  VMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVADVIYRYAF

SwissProt top hitse value%identityAlignment
P0A8Y5 Sugar phosphatase YidA2.0e-0752.83Show/hide
Query:  VMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVADVIYRY
        +MAIGD ENDI M+E A +G+A+ N     K VAN +  SN EDGVA  I +Y
Subjt:  VMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVADVIYRY

P0A8Y6 Sugar phosphatase YidA2.0e-0752.83Show/hide
Query:  VMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVADVIYRY
        +MAIGD ENDI M+E A +G+A+ N     K VAN +  SN EDGVA  I +Y
Subjt:  VMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVADVIYRY

P0A8Y7 Sugar phosphatase YidA2.0e-0752.83Show/hide
Query:  VMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVADVIYRY
        +MAIGD ENDI M+E A +G+A+ N     K VAN +  SN EDGVA  I +Y
Subjt:  VMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVADVIYRY

P70947 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YitU1.0e-0645.28Show/hide
Query:  VMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVADVIYRY
        ++A GD +ND+EMLE A  G+A+ NG +  K +AN    +N+EDGVA  +  Y
Subjt:  VMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVADVIYRY

Q8L5Z4 Endoribonuclease YBEY, chloroplastic2.3e-1983.64Show/hide
Query:  VMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVADVIYRYAF
        +MAIGDGENDIEML+LASLG+ALSNG+EKTKAVA++IG SND+DGVAD IYRYAF
Subjt:  VMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVADVIYRYAF

Arabidopsis top hitse value%identityAlignment
AT2G25870.1 haloacid dehalogenase-like hydrolase family protein1.6e-2083.64Show/hide
Query:  VMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVADVIYRYAF
        +MAIGDGENDIEML+LASLG+ALSNG+EKTKAVA++IG SND+DGVAD IYRYAF
Subjt:  VMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVADVIYRYAF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCTAAACACCCCACAGCTTCCTTGTGAAAAGTTCATTCAATACAGACATGATCTTGTGCTTAAACTGGTCTTGATTATGGTAATGGCTATTGGAGATGGGGAAAA
TGACATTGAGATGCTGGAGCTGGCATCTCTTGGGATTGCTTTGAGCAATGGATCAGAGAAAACAAAAGCTGTTGCTAACCTTATTGGTCCCAGCAATGATGAAGATGGTG
TTGCAGATGTCATATACCGATACGCATTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGATTCTAAACACCCCACAGCTTCCTTGTGAAAAGTTCATTCAATACAGACATGATCTTGTGCTTAAACTGGTCTTGATTATGGTAATGGCTATTGGAGATGGGGAAAA
TGACATTGAGATGCTGGAGCTGGCATCTCTTGGGATTGCTTTGAGCAATGGATCAGAGAAAACAAAAGCTGTTGCTAACCTTATTGGTCCCAGCAATGATGAAGATGGTG
TTGCAGATGTCATATACCGATACGCATTCTAG
Protein sequenceShow/hide protein sequence
MILNTPQLPCEKFIQYRHDLVLKLVLIMVMAIGDGENDIEMLELASLGIALSNGSEKTKAVANLIGPSNDEDGVADVIYRYAF