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Lag0037515 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0037515
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr2:6921488..6924358
RNA-Seq ExpressionLag0037515
SyntenyLag0037515
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_042944540.1 uncharacterized protein LOC122278417 [Carya illinoinensis]3.3e-0523.33Show/hide
Query:  MVNLWSHQVPVFGNCPICQKEMETTYHVLF--------WCNRARKCGKSC------EWILDYLEEFC-----------KANPVGGAHSQSLEDVRRLI--
        M+NL   ++    +CPIC +E E+T H L+        WC       KS       + + +++ E C           K   +G  H+  +  +   +  
Subjt:  MVNLWSHQVPVFGNCPICQKEMETTYHVLF--------WCNRARKCGKSC------EWILDYLEEFC-----------KANPVGGAHSQSLEDVRRLI--

Query:  ---EECEEIIMHIDATYNEIQGRIGIGLALRDKQGNLKAVMKTSSHIGSTPLGVEAEVVLEGLRLARSLEVKVLTVVSNSLSLIQSIRDEVQCKSCIATT
             C +I  + DA  N  Q R+GIGL  RD +G++    K S    + P   EA        LA+ +E + + +  ++L ++  I    +    +   
Subjt:  ---EECEEIIMHIDATYNEIQGRIGIGLALRDKQGNLKAVMKTSSHIGSTPLGVEAEVVLEGLRLARSLEVKVLTVVSNSLSLIQSIRDEVQCKSCIATT

Query:  LWDIKNIQSS
        L D + + SS
Subjt:  LWDIKNIQSS

XP_042964695.1 uncharacterized protein LOC122298917 [Carya illinoinensis]2.8e-0423.08Show/hide
Query:  MVNLWSHQVPVFGNCPICQKEMETTYHVLFWCNRARKCGKS-------------------------CE--------------WI----LDYLEEFCKANP
        M+NL+  ++     CPIC +E ETT H L+ C+ A                               C+              W+    L +   F  AN 
Subjt:  MVNLWSHQVPVFGNCPICQKEMETTYHVLFWCNRARKCGKS-------------------------CE--------------WI----LDYLEEFCKANP

Query:  VGGAHSQSLEDVRRLIEECEEII---------------------MHIDATYNEIQGRIGIGLALRDKQGNLKAVMKTSSHIGSTPLGVEAEVVLEGLRLA
        +    SQSLE+ +    +  +++                     ++ DA  N  QGRIGIGL  RD +G++ A  K S    + P+  EA        LA
Subjt:  VGGAHSQSLEDVRRLIEECEEII---------------------MHIDATYNEIQGRIGIGLALRDKQGNLKAVMKTSSHIGSTPLGVEAEVVLEGLRLA

Query:  RSLEVKVLTVVSNSLSLIQSIRDEVQCKSCIATTLWDIKNIQSSFMK
        + LE+  + +  ++L ++  +   V+    +   L D + I SS ++
Subjt:  RSLEVKVLTVVSNSLSLIQSIRDEVQCKSCIATTLWDIKNIQSSFMK

XP_042965938.1 uncharacterized protein LOC122299618 [Carya illinoinensis]4.7e-0421.23Show/hide
Query:  NLWSHQVPVFGNCPICQKEMETTYHVLFWCNRARKCGKSCEWILDYLEEFCKANPVGGAHSQSLEDVRRLIE----ECEEIIMHIDATYNEIQGRIGIGL
        NL   ++     CPIC+ E ETT H L+          SC   +D   E  K      +    L   RR +       + +  + DA  ++ +G++GIG+
Subjt:  NLWSHQVPVFGNCPICQKEMETTYHVLFWCNRARKCGKSCEWILDYLEEFCKANPVGGAHSQSLEDVRRLIE----ECEEIIMHIDATYNEIQGRIGIGL

Query:  ALRDKQGNLKAVMKTSSHIGSTPLGVEAEVVLEGLRLARSLEVKVLTVVSNSLSLIQSIRDEVQCKSCIATTLWDIKNI
         +RD++G +        +  +     E+  + + L + R L    +    ++ +++ ++  E +  S   + + D+KN+
Subjt:  ALRDKQGNLKAVMKTSSHIGSTPLGVEAEVVLEGLRLARSLEVKVLTVVSNSLSLIQSIRDEVQCKSCIATTLWDIKNI

TrEMBL top hitse value%identityAlignment
A0A7J9BCI1 RNase H domain-containing protein6.6e-0432.14Show/hide
Query:  VRRLIEECEEIIMHIDATYNEIQGRIGIGLALRDKQGNLKAVMKTSSHIG-STPLGVEAEVVLEGLRLARSLEVKVLTVVSNSLSLIQSIRDEVQCKSCI
        ++RL EE  E  +H DA ++  + R   G+ +RD++G ++ V KT+ H   S+P   EA   L+ ++L  SL ++ +T+  +S ++I+  +  V  KS I
Subjt:  VRRLIEECEEIIMHIDATYNEIQGRIGIGLALRDKQGNLKAVMKTSSHIG-STPLGVEAEVVLEGLRLARSLEVKVLTVVSNSLSLIQSIRDEVQCKSCI

Query:  ATTLWDIKNIQS
           + DIK+  S
Subjt:  ATTLWDIKNIQS

A0A803NZS4 Uncharacterized protein8.7e-0427.18Show/hide
Query:  VNLWSHQVPVFGNCPICQKEMETTYHVLFWCNRARKCGKSCEWILDYLE----EFCKANPVGGAHSQSLEDVRRLIEECEEIIMHIDATYNEIQGRIGIG
        + L +  V V   CP+C  E E+T HVLF CN AR C     W L   +    E       G  H       +  I        ++D    E + R G G
Subjt:  VNLWSHQVPVFGNCPICQKEMETTYHVLFWCNRARKCGKSCEWILDYLE----EFCKANPVGGAHSQSLEDVRRLIEECEEIIMHIDATYNEIQGRIGIG

Query:  LALRDKQGNLKAVMKTSSHIGSTPLGVEAEV-VLEGLRLARSLEVKVLTVVSNSLSLIQSIRDEVQCKSCIATTLWD-------IKNIQSSFMKR
         ++RDK G       +++ IG     +  +V V E L   +  ++  + V  +SL ++Q+I+  VQ  S     + D       + N+  SF+KR
Subjt:  LALRDKQGNLKAVMKTSSHIGSTPLGVEAEV-VLEGLRLARSLEVKVLTVVSNSLSLIQSIRDEVQCKSCIATTLWD-------IKNIQSSFMKR

A0A803QFU0 Uncharacterized protein4.2e-0625.13Show/hide
Query:  CPICQKEMETTYHVLFWCNRARKCGKSCEW----------ILDYLEEF-------------CKANPVGGAHSQSLEDVRRLIE-----ECEEIIMHIDAT
        CP+C+ + ET  H LF C RA++  ++ E+          IL +  E+               +  V   H  ++  V  L +        ++ ++ DA 
Subjt:  CPICQKEMETTYHVLFWCNRARKCGKSCEW----------ILDYLEEF-------------CKANPVGGAHSQSLEDVRRLIE-----ECEEIIMHIDAT

Query:  YNEIQGRIGIGLALRDKQGNLKAVMKTSSHIGSTPLGVEAEVVLEGLRLARSLEVKVLTVVSNSLSLIQSIRDEVQCKSCIATTLWDIKNIQSSF
         N     IGIG  LRD  G +KA +  S      P  +EA  +   L+   SL +    + ++SL ++Q ++    C S   T L D+  + S F
Subjt:  YNEIQGRIGIGLALRDKQGNLKAVMKTSSHIGSTPLGVEAEVVLEGLRLARSLEVKVLTVVSNSLSLIQSIRDEVQCKSCIATTLWDIKNIQSSF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCAACCTATGGAGTCATCAAGTTCCAGTTTTTGGAAATTGCCCGATTTGCCAGAAAGAGATGGAGACCACATATCATGTTCTGTTTTGGTGTAATCGGGCTAGGAA
GTGTGGGAAGTCGTGTGAGTGGATTCTTGATTACTTGGAGGAGTTTTGTAAGGCCAATCCAGTGGGTGGTGCTCATTCCCAATCTTTGGAGGACGTTCGTCGATTGATTG
AAGAATGTGAGGAGATTATTATGCATATTGATGCAACATATAATGAAATCCAAGGAAGAATTGGTATTGGGTTAGCGCTTCGAGATAAACAAGGGAATCTAAAGGCGGTG
ATGAAAACGTCTTCTCATATAGGTTCAACTCCATTAGGCGTGGAAGCGGAAGTGGTACTAGAGGGGCTTCGCCTAGCAAGGTCTTTAGAGGTGAAAGTTTTAACGGTTGT
GTCCAATTCTCTGTCATTAATACAATCTATTAGAGATGAAGTTCAATGCAAATCTTGTATTGCCACTACCTTGTGGGATATTAAGAATATTCAAAGCTCCTTCATGAAGC
GCCCTCTTCCTGCCCCGCTCAACATGCTCCAACGTCCATTCCCGGATTCCCTCTCTCAGCCCCATTTTGGTCAATTCCCATCTCCTCACTCCTCCCACTCGAAATTCAGC
GCGTGGGCTTCAAACCTCACACAACCAGGTGCAGGGAGCTGCAGTGAGATGGAAATGCGCGTGGGACAGTGTACTAGAGTAGAACCCACGGCCCCGTCTGCAGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCAACCTATGGAGTCATCAAGTTCCAGTTTTTGGAAATTGCCCGATTTGCCAGAAAGAGATGGAGACCACATATCATGTTCTGTTTTGGTGTAATCGGGCTAGGAA
GTGTGGGAAGTCGTGTGAGTGGATTCTTGATTACTTGGAGGAGTTTTGTAAGGCCAATCCAGTGGGTGGTGCTCATTCCCAATCTTTGGAGGACGTTCGTCGATTGATTG
AAGAATGTGAGGAGATTATTATGCATATTGATGCAACATATAATGAAATCCAAGGAAGAATTGGTATTGGGTTAGCGCTTCGAGATAAACAAGGGAATCTAAAGGCGGTG
ATGAAAACGTCTTCTCATATAGGTTCAACTCCATTAGGCGTGGAAGCGGAAGTGGTACTAGAGGGGCTTCGCCTAGCAAGGTCTTTAGAGGTGAAAGTTTTAACGGTTGT
GTCCAATTCTCTGTCATTAATACAATCTATTAGAGATGAAGTTCAATGCAAATCTTGTATTGCCACTACCTTGTGGGATATTAAGAATATTCAAAGCTCCTTCATGAAGC
GCCCTCTTCCTGCCCCGCTCAACATGCTCCAACGTCCATTCCCGGATTCCCTCTCTCAGCCCCATTTTGGTCAATTCCCATCTCCTCACTCCTCCCACTCGAAATTCAGC
GCGTGGGCTTCAAACCTCACACAACCAGGTGCAGGGAGCTGCAGTGAGATGGAAATGCGCGTGGGACAGTGTACTAGAGTAGAACCCACGGCCCCGTCTGCAGAATGA
Protein sequenceShow/hide protein sequence
MVNLWSHQVPVFGNCPICQKEMETTYHVLFWCNRARKCGKSCEWILDYLEEFCKANPVGGAHSQSLEDVRRLIEECEEIIMHIDATYNEIQGRIGIGLALRDKQGNLKAV
MKTSSHIGSTPLGVEAEVVLEGLRLARSLEVKVLTVVSNSLSLIQSIRDEVQCKSCIATTLWDIKNIQSSFMKRPLPAPLNMLQRPFPDSLSQPHFGQFPSPHSSHSKFS
AWASNLTQPGAGSCSEMEMRVGQCTRVEPTAPSAE