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Lag0037558 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0037558
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionsister chromatid cohesion protein PDS5 homolog A-like
Genome locationchr2:7228421..7228945
RNA-Seq ExpressionLag0037558
SyntenyLag0037558
Gene Ontology termsGO:0007064 - mitotic sister chromatid cohesion (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022937151.1 sister chromatid cohesion protein PDS5 homolog A-like isoform X1 [Cucurbita moschata]2.8e-0973.68Show/hide
Query:  LLLAICVSEFFRVMAPQ--LRSKYRLRDVLILLLSSFAELADMTSPLFSRRVKILDS
        LLLAICVSE FRV+AP+     KY LRDV ILLLSSF+ELAD TSPLFS RVKIL++
Subjt:  LLLAICVSEFFRVMAPQ--LRSKYRLRDVLILLLSSFAELADMTSPLFSRRVKILDS
XP_022937155.1 sister chromatid cohesion protein PDS5 homolog A-like isoform X3 [Cucurbita moschata]2.8e-0973.68Show/hide
Query:  LLLAICVSEFFRVMAPQ--LRSKYRLRDVLILLLSSFAELADMTSPLFSRRVKILDS
        LLLAICVSE FRV+AP+     KY LRDV ILLLSSF+ELAD TSPLFS RVKIL++
Subjt:  LLLAICVSEFFRVMAPQ--LRSKYRLRDVLILLLSSFAELADMTSPLFSRRVKILDS
XP_022976679.1 sister chromatid cohesion protein PDS5 homolog A-like isoform X3 [Cucurbita maxima]2.8e-0973.68Show/hide
Query:  LLLAICVSEFFRVMAPQ--LRSKYRLRDVLILLLSSFAELADMTSPLFSRRVKILDS
        LLLAICVSE FRV+AP+     KY LRDV ILLLSSF+ELAD TSPLFS RVKIL++
Subjt:  LLLAICVSEFFRVMAPQ--LRSKYRLRDVLILLLSSFAELADMTSPLFSRRVKILDS
XP_023536012.1 sister chromatid cohesion protein PDS5 homolog A-like isoform X2 [Cucurbita pepo subsp. pepo]2.8e-0973.68Show/hide
Query:  LLLAICVSEFFRVMAPQ--LRSKYRLRDVLILLLSSFAELADMTSPLFSRRVKILDS
        LLLAICVSE FRV+AP+     KY LRDV ILLLSSF+ELAD TSPLFS RVKIL++
Subjt:  LLLAICVSEFFRVMAPQ--LRSKYRLRDVLILLLSSFAELADMTSPLFSRRVKILDS
XP_023536017.1 sister chromatid cohesion protein PDS5 homolog A-like isoform X5 [Cucurbita pepo subsp. pepo]2.8e-0973.68Show/hide
Query:  LLLAICVSEFFRVMAPQ--LRSKYRLRDVLILLLSSFAELADMTSPLFSRRVKILDS
        LLLAICVSE FRV+AP+     KY LRDV ILLLSSF+ELAD TSPLFS RVKIL++
Subjt:  LLLAICVSEFFRVMAPQ--LRSKYRLRDVLILLLSSFAELADMTSPLFSRRVKILDS
TrEMBL top hitse value%identityAlignment
A0A6J1F9K0 sister chromatid cohesion protein PDS5 homolog A-like isoform X11.3e-0973.68Show/hide
Query:  LLLAICVSEFFRVMAPQ--LRSKYRLRDVLILLLSSFAELADMTSPLFSRRVKILDS
        LLLAICVSE FRV+AP+     KY LRDV ILLLSSF+ELAD TSPLFS RVKIL++
Subjt:  LLLAICVSEFFRVMAPQ--LRSKYRLRDVLILLLSSFAELADMTSPLFSRRVKILDS
A0A6J1IGF7 sister chromatid cohesion protein PDS5 homolog A-like isoform X51.3e-0973.68Show/hide
Query:  LLLAICVSEFFRVMAPQ--LRSKYRLRDVLILLLSSFAELADMTSPLFSRRVKILDS
        LLLAICVSE FRV+AP+     KY LRDV ILLLSSF+ELAD TSPLFS RVKIL++
Subjt:  LLLAICVSEFFRVMAPQ--LRSKYRLRDVLILLLSSFAELADMTSPLFSRRVKILDS
A0A6J1IHJ2 sister chromatid cohesion protein PDS5 homolog A-like isoform X21.3e-0973.68Show/hide
Query:  LLLAICVSEFFRVMAPQ--LRSKYRLRDVLILLLSSFAELADMTSPLFSRRVKILDS
        LLLAICVSE FRV+AP+     KY LRDV ILLLSSF+ELAD TSPLFS RVKIL++
Subjt:  LLLAICVSEFFRVMAPQ--LRSKYRLRDVLILLLSSFAELADMTSPLFSRRVKILDS
A0A6J1IK50 sister chromatid cohesion protein PDS5 homolog A-like isoform X41.3e-0973.68Show/hide
Query:  LLLAICVSEFFRVMAPQ--LRSKYRLRDVLILLLSSFAELADMTSPLFSRRVKILDS
        LLLAICVSE FRV+AP+     KY LRDV ILLLSSF+ELAD TSPLFS RVKIL++
Subjt:  LLLAICVSEFFRVMAPQ--LRSKYRLRDVLILLLSSFAELADMTSPLFSRRVKILDS
A0A6J1IMW1 sister chromatid cohesion protein PDS5 homolog A-like isoform X11.3e-0973.68Show/hide
Query:  LLLAICVSEFFRVMAPQ--LRSKYRLRDVLILLLSSFAELADMTSPLFSRRVKILDS
        LLLAICVSE FRV+AP+     KY LRDV ILLLSSF+ELAD TSPLFS RVKIL++
Subjt:  LLLAICVSEFFRVMAPQ--LRSKYRLRDVLILLLSSFAELADMTSPLFSRRVKILDS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G77600.1 ARM repeat superfamily protein1.9e-0849.12Show/hide
Query:  LLLAICVSEFFRVMAPQL--RSKYRLRDVLILLLSSFAELADMTSPLFSRRVKILDS
        LL+ +CVSE FR++AP L    +Y LRD+  L ++ F+EL+D  SP FS+R KIL++
Subjt:  LLLAICVSEFFRVMAPQL--RSKYRLRDVLILLLSSFAELADMTSPLFSRRVKILDS
AT1G77600.2 ARM repeat superfamily protein1.9e-0849.12Show/hide
Query:  LLLAICVSEFFRVMAPQL--RSKYRLRDVLILLLSSFAELADMTSPLFSRRVKILDS
        LL+ +CVSE FR++AP L    +Y LRD+  L ++ F+EL+D  SP FS+R KIL++
Subjt:  LLLAICVSEFFRVMAPQL--RSKYRLRDVLILLLSSFAELADMTSPLFSRRVKILDS
AT1G77600.3 ARM repeat superfamily protein1.9e-0849.12Show/hide
Query:  LLLAICVSEFFRVMAPQL--RSKYRLRDVLILLLSSFAELADMTSPLFSRRVKILDS
        LL+ +CVSE FR++AP L    +Y LRD+  L ++ F+EL+D  SP FS+R KIL++
Subjt:  LLLAICVSEFFRVMAPQL--RSKYRLRDVLILLLSSFAELADMTSPLFSRRVKILDS
AT5G47690.1 binding4.4e-0544.64Show/hide
Query:  LLLAICVSEFFRVMAPQL-RSKYRLRDVLILLLSSFAELADMTSPLFSRRVKILDS
        LL+A CVSE  R+ AP+   S   ++D+  L++S+FA L D++ P F RRV IL++
Subjt:  LLLAICVSEFFRVMAPQL-RSKYRLRDVLILLLSSFAELADMTSPLFSRRVKILDS
AT5G47690.2 binding4.4e-0544.64Show/hide
Query:  LLLAICVSEFFRVMAPQL-RSKYRLRDVLILLLSSFAELADMTSPLFSRRVKILDS
        LL+A CVSE  R+ AP+   S   ++D+  L++S+FA L D++ P F RRV IL++
Subjt:  LLLAICVSEFFRVMAPQL-RSKYRLRDVLILLLSSFAELADMTSPLFSRRVKILDS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCCTTTGATTCTGAACTTGGTAGAGTTTCTGCCGTGATTCTCGATCTCGATGGAACCCTTTTGGACACTGGTCTACTTCTATTAGCTATATGCGTGAGTGAATT
TTTTCGGGTCATGGCACCACAACTTCGAAGCAAATACCGTCTAAGGGACGTTTTAATACTTCTTTTGAGTTCTTTTGCGGAGCTAGCGGATATGACAAGTCCACTTTTCT
CTCGGAGGGTTAAAATACTAGACAGTGGCACGACGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTTCCTTTGATTCTGAACTTGGTAGAGTTTCTGCCGTGATTCTCGATCTCGATGGAACCCTTTTGGACACTGGTCTACTTCTATTAGCTATATGCGTGAGTGAATT
TTTTCGGGTCATGGCACCACAACTTCGAAGCAAATACCGTCTAAGGGACGTTTTAATACTTCTTTTGAGTTCTTTTGCGGAGCTAGCGGATATGACAAGTCCACTTTTCT
CTCGGAGGGTTAAAATACTAGACAGTGGCACGACGTAA
Protein sequenceShow/hide protein sequence
MSSFDSELGRVSAVILDLDGTLLDTGLLLLAICVSEFFRVMAPQLRSKYRLRDVLILLLSSFAELADMTSPLFSRRVKILDSGTT