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Lag0037630 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0037630
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionPhotosystem II 10 kDa polypeptide, chloroplastic
Genome locationchr2:7853685..7856526
RNA-Seq ExpressionLag0037630
SyntenyLag0037630
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009654 - photosystem II oxygen evolving complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR006814 - Photosystem II PsbR


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG8365217.1 hypothetical protein BUALT_Bualt18G0081400 [Buddleja alternifolia]2.1e-5482.27Show/hide
Query:  MATSVVASSLALKPANFTVERSAAARGLLPSLARTSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDE
        MAT+ + SSL+LKP+ F VE+SAA RG LPSLART+  R+EASGGKKIKTDKPYGIGGGM+LR+GVDASGRK  GKGVYQ+VDKYGANVDGYSPIYN +E
Subjt:  MATSVVASSLALKPANFTVERSAAARGLLPSLARTSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDE

Query:  WSPTGDVYVGGTTGLAIWAVTLLGLLAGGALLVYNTSALAQ
        WSP+GDVYVGGTTGLAIWA+TL GLLAGGALLVYNTSALAQ
Subjt:  WSPTGDVYVGGTTGLAIWAVTLLGLLAGGALLVYNTSALAQ

KAG8386594.1 hypothetical protein BUALT_Bualt03G0164500 [Buddleja alternifolia]1.6e-5481.56Show/hide
Query:  MATSVVASSLALKPANFTVERSAAARGLLPSLARTSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDE
        MAT+V+ SS++LKP+ F V+RSAA RG LPSLART++ R++ASGGKKIKTDKP+GIGGGM+LR+G DASGRKPTGKGVYQ+VDKYGANVDGYSPIYN +E
Subjt:  MATSVVASSLALKPANFTVERSAAARGLLPSLARTSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDE

Query:  WSPTGDVYVGGTTGLAIWAVTLLGLLAGGALLVYNTSALAQ
        WSP+GDVYVGGTTGLAIWA TL GLLAGGALLVYNTSALAQ
Subjt:  WSPTGDVYVGGTTGLAIWAVTLLGLLAGGALLVYNTSALAQ

XP_002529952.1 photosystem II 10 kDa polypeptide, chloroplastic [Ricinus communis]1.6e-5482.98Show/hide
Query:  MATSVVASSLALKPANFTVERSAAARGLLPSLARTSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDE
        MA+SV+A S++LKP+ FTV++S++ RG LP+L+R  +FRIEASGGKKIKTDKPYGIGGGM LRNGVDASGRKPTGKGVYQ+VDKYGANVDGYSPIYNTDE
Subjt:  MATSVVASSLALKPANFTVERSAAARGLLPSLARTSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDE

Query:  WSPTGDVYVGGTTGLAIWAVTLLGLLAGGALLVYNTSALAQ
        WSPTGDVY GG TGLAIWA+TL GLLAGGALLVYNTSALAQ
Subjt:  WSPTGDVYVGGTTGLAIWAVTLLGLLAGGALLVYNTSALAQ

XP_011097661.1 photosystem II 10 kDa polypeptide, chloroplastic [Sesamum indicum]5.5e-5584.06Show/hide
Query:  SVVASSLALKPANFTVERSAAARGLLPSLARTSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSP
        S V SS++LKPA FT E+S A RG LPSLART+ FR+ ASGGKKIKTDKPYG+GGGM LRNGVDASGRKPTGKGVYQ+VDKYGANVDGYSPIYN DEWSP
Subjt:  SVVASSLALKPANFTVERSAAARGLLPSLARTSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSP

Query:  TGDVYVGGTTGLAIWAVTLLGLLAGGALLVYNTSALAQ
        +GDVYVGGTTGLAIWAVTL+G+LAGGALLVYNTSAL+Q
Subjt:  TGDVYVGGTTGLAIWAVTLLGLLAGGALLVYNTSALAQ

XP_038899014.1 photosystem II 10 kDa polypeptide, chloroplastic-like [Benincasa hispida]1.2e-5786.99Show/hide
Query:  MATSVV-ASSLALKPANFTVERSAA---ARGLLPSLART-SSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPI
        MA SVV ASSL+LKP+NF V+RSAA       +PSLART SSF++EASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPI
Subjt:  MATSVV-ASSLALKPANFTVERSAA---ARGLLPSLART-SSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPI

Query:  YNTDEWSPTGDVYVGGTTGLAIWAVTLLGLLAGGALLVYNTSALAQ
        YNTDEWSPTGDVY  GTTGLAIWAVTLLGLLAGGALLVYNTSALAQ
Subjt:  YNTDEWSPTGDVYVGGTTGLAIWAVTLLGLLAGGALLVYNTSALAQ

TrEMBL top hitse value%identityAlignment
A0A6I9UCR6 Photosystem II 10 kDa polypeptide, chloroplastic2.7e-5584.06Show/hide
Query:  SVVASSLALKPANFTVERSAAARGLLPSLARTSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSP
        S V SS++LKPA FT E+S A RG LPSLART+ FR+ ASGGKKIKTDKPYG+GGGM LRNGVDASGRKPTGKGVYQ+VDKYGANVDGYSPIYN DEWSP
Subjt:  SVVASSLALKPANFTVERSAAARGLLPSLARTSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSP

Query:  TGDVYVGGTTGLAIWAVTLLGLLAGGALLVYNTSALAQ
        +GDVYVGGTTGLAIWAVTL+G+LAGGALLVYNTSAL+Q
Subjt:  TGDVYVGGTTGLAIWAVTLLGLLAGGALLVYNTSALAQ

A0A6L9GKE0 Uncharacterized protein (Fragment)5.0e-5484.89Show/hide
Query:  SVVASSLALKPANFTVERSAAARGLLPSLARTSS-FRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWS
        S V SSLALKPA FT E+S AARG LPSLART++  R+EASGGKKIKTD PYG GGGM+LRNGVDASGRKP GKGVYQYVDKYGANVDGYSPIYN DEW+
Subjt:  SVVASSLALKPANFTVERSAAARGLLPSLARTSS-FRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWS

Query:  PTGDVYVGGTTGLAIWAVTLLGLLAGGALLVYNTSALAQ
        P+GDVYVGGTTGLAIWAVTL G+LAGGALLVYNTSALAQ
Subjt:  PTGDVYVGGTTGLAIWAVTLLGLLAGGALLVYNTSALAQ

A0A7X5DQP4 Uncharacterized protein5.0e-5484.89Show/hide
Query:  SVVASSLALKPANFTVERSAAARGLLPSLARTSS-FRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWS
        S V SSLALKPA FT E+S AARG LPSLART++  R+EASGGKKIKTD PYG GGGM+LRNGVDASGRKP GKGVYQYVDKYGANVDGYSPIYN DEW+
Subjt:  SVVASSLALKPANFTVERSAAARGLLPSLARTSS-FRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWS

Query:  PTGDVYVGGTTGLAIWAVTLLGLLAGGALLVYNTSALAQ
        P+GDVYVGGTTGLAIWAVTL G+LAGGALLVYNTSALAQ
Subjt:  PTGDVYVGGTTGLAIWAVTLLGLLAGGALLVYNTSALAQ

A0A7X5DXB8 Uncharacterized protein5.0e-5484.89Show/hide
Query:  SVVASSLALKPANFTVERSAAARGLLPSLARTSS-FRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWS
        S V SSLALKPA FT E+S AARG LPSLART++  R+EASGGKKIKTD PYG GGGM+LRNGVDASGRKP GKGVYQYVDKYGANVDGYSPIYN DEW+
Subjt:  SVVASSLALKPANFTVERSAAARGLLPSLARTSS-FRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWS

Query:  PTGDVYVGGTTGLAIWAVTLLGLLAGGALLVYNTSALAQ
        P+GDVYVGGTTGLAIWAVTL G+LAGGALLVYNTSALAQ
Subjt:  PTGDVYVGGTTGLAIWAVTLLGLLAGGALLVYNTSALAQ

B9SVD3 Photosystem II 10 kDa polypeptide, chloroplastic7.8e-5582.98Show/hide
Query:  MATSVVASSLALKPANFTVERSAAARGLLPSLARTSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDE
        MA+SV+A S++LKP+ FTV++S++ RG LP+L+R  +FRIEASGGKKIKTDKPYGIGGGM LRNGVDASGRKPTGKGVYQ+VDKYGANVDGYSPIYNTDE
Subjt:  MATSVVASSLALKPANFTVERSAAARGLLPSLARTSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDE

Query:  WSPTGDVYVGGTTGLAIWAVTLLGLLAGGALLVYNTSALAQ
        WSPTGDVY GG TGLAIWA+TL GLLAGGALLVYNTSALAQ
Subjt:  WSPTGDVYVGGTTGLAIWAVTLLGLLAGGALLVYNTSALAQ

SwissProt top hitse value%identityAlignment
P06183 Photosystem II 10 kDa polypeptide, chloroplastic4.5e-5279.86Show/hide
Query:  SVVASSLALKPANFTVERSAAARGLLPSLAR-TSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWS
        S V SSL+LKP  FT+E++ + +G LPSLAR +SSF++ ASG KK+KTDKPYGI G M LR+GVDASGRKP GKGVYQYVDKYGANVDGYSPIYNTDEWS
Subjt:  SVVASSLALKPANFTVERSAAARGLLPSLAR-TSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWS

Query:  PTGDVYVGGTTGLAIWAVTLLGLLAGGALLVYNTSALAQ
        P+GDVYVGGTTGLAIWAVTL+G+LAGGALLVYNTSALAQ
Subjt:  PTGDVYVGGTTGLAIWAVTLLGLLAGGALLVYNTSALAQ

P10690 Photosystem II 10 kDa polypeptide, chloroplastic3.5e-5277.46Show/hide
Query:  MATSVVASSLALKPANFTVERSAAARGLLPSLARTS-SFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTD
        MATSV+ SSL+LKP++F V+  +A +G LPSL+R+S SF + ASG KKIK DKP GIGGGM LR+GVD+SGRKPTGKGVYQ+VDKYGANVDGYSPIYN +
Subjt:  MATSVVASSLALKPANFTVERSAAARGLLPSLARTS-SFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTD

Query:  EWSPTGDVYVGGTTGLAIWAVTLLGLLAGGALLVYNTSALAQ
        EW+PTGDVY GGTTGL IWAVTL GLLAGGALLVYNTSALAQ
Subjt:  EWSPTGDVYVGGTTGLAIWAVTLLGLLAGGALLVYNTSALAQ

P49108 Photosystem II 10 kDa polypeptide, chloroplastic4.7e-4975.52Show/hide
Query:  MATSVVASSLALKPANFTVERSAAARGLLPSLART--SSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNT
        MA SV+ SS+ LKPA FTVE+  +ARG LPSL R   SSFRI ASG KKIKTDKP+G+ G M+LR+GVDASGRK  G GVY++VDKYGANVDGYSPIYN 
Subjt:  MATSVVASSLALKPANFTVERSAAARGLLPSLART--SSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNT

Query:  DEWSPTGDVYVGGTTGLAIWAVTLLGLLAGGALLVYNTSALAQ
        DEWS +GDVY GG TGLAIWAVTL G+LAGGALLVYNTSALAQ
Subjt:  DEWSPTGDVYVGGTTGLAIWAVTLLGLLAGGALLVYNTSALAQ

Q40163 Photosystem II 10 kDa polypeptide, chloroplastic1.3e-5179.86Show/hide
Query:  SVVASSLALKPANFTVERSAAARGLLPSLAR-TSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWS
        S V SSL+LKP  FT+E+  + +G LPSL R +SSF++ ASG KK+KTDKPYGI G M LR+GVDASGRKP GKGVYQYVDKYGANVDGYSPIYNTDEWS
Subjt:  SVVASSLALKPANFTVERSAAARGLLPSLAR-TSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWS

Query:  PTGDVYVGGTTGLAIWAVTLLGLLAGGALLVYNTSALAQ
        P+GDVYVGGTTGLAIWAVTLLG+LAGGALLVYNTSALAQ
Subjt:  PTGDVYVGGTTGLAIWAVTLLGLLAGGALLVYNTSALAQ

Q40519 Photosystem II 10 kDa polypeptide, chloroplastic6.6e-5176.09Show/hide
Query:  VVASSLALKPANFTVERSAAARGLLPSLAR-TSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSP
        + ++ ++LKPA F+VE++ A +G LPSLAR +SSFR++ASG KK+KTDKPYGI G M+LR+GVDASGRK  GKGVYQ+VDKYGANVDGYSPIYNTD+WSP
Subjt:  VVASSLALKPANFTVERSAAARGLLPSLAR-TSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSP

Query:  TGDVYVGGTTGLAIWAVTLLGLLAGGALLVYNTSALAQ
        +GDVYVGGTTGLAIWAVTL+G+LAGGALLV+NTSALAQ
Subjt:  TGDVYVGGTTGLAIWAVTLLGLLAGGALLVYNTSALAQ

Arabidopsis top hitse value%identityAlignment
AT1G79040.1 photosystem II subunit R5.7e-5076.06Show/hide
Query:  MATSVVASSLALKPANFTVERSAAARGLLPSLART-SSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTD
        MA SV+ SS+ LKPA FTVE++ AARG LPSL R   SF+I ASG KKIKTDKP+GI G M+LR+GVDASGRK  G GVY+YVDKYGANVDGYSPIYN +
Subjt:  MATSVVASSLALKPANFTVERSAAARGLLPSLART-SSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTD

Query:  EWSPTGDVYVGGTTGLAIWAVTLLGLLAGGALLVYNTSALAQ
        EWS +GDVY GG TGLAIWAVTL G+LAGGALLVYNTSALAQ
Subjt:  EWSPTGDVYVGGTTGLAIWAVTLLGLLAGGALLVYNTSALAQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACCTCCGTCGTCGCTTCTTCTCTCGCCCTCAAACCGGCCAATTTCACCGTCGAGAGATCGGCGGCCGCTCGAGGCCTTCTTCCTTCACTCGCGAGAACTTCTTC
GTTCAGAATCGAGGCCAGCGGCGGCAAGAAAATCAAGACCGATAAGCCCTACGGAATCGGCGGCGGCATGAACTTGAGGAACGGCGTCGATGCGTCCGGGAGGAAACCGA
CGGGCAAGGGAGTGTACCAATACGTGGACAAGTACGGTGCCAATGTTGATGGATACAGTCCTATCTACAACACTGACGAATGGTCTCCTACTGGTGATGTCTATGTTGGG
GGCACAACTGGGCTGGCAATTTGGGCCGTAACCCTGCTGGGCCTGCTTGCTGGAGGGGCCCTTCTTGTCTACAACACAAGTGCTCTGGCCCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAACCTCCGTCGTCGCTTCTTCTCTCGCCCTCAAACCGGCCAATTTCACCGTCGAGAGATCGGCGGCCGCTCGAGGCCTTCTTCCTTCACTCGCGAGAACTTCTTC
GTTCAGAATCGAGGCCAGCGGCGGCAAGAAAATCAAGACCGATAAGCCCTACGGAATCGGCGGCGGCATGAACTTGAGGAACGGCGTCGATGCGTCCGGGAGGAAACCGA
CGGGCAAGGGAGTGTACCAATACGTGGACAAGTACGGTGCCAATGTTGATGGATACAGTCCTATCTACAACACTGACGAATGGTCTCCTACTGGTGATGTCTATGTTGGG
GGCACAACTGGGCTGGCAATTTGGGCCGTAACCCTGCTGGGCCTGCTTGCTGGAGGGGCCCTTCTTGTCTACAACACAAGTGCTCTGGCCCAGTGA
Protein sequenceShow/hide protein sequence
MATSVVASSLALKPANFTVERSAAARGLLPSLARTSSFRIEASGGKKIKTDKPYGIGGGMNLRNGVDASGRKPTGKGVYQYVDKYGANVDGYSPIYNTDEWSPTGDVYVG
GTTGLAIWAVTLLGLLAGGALLVYNTSALAQ