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Lag0037661 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0037661
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr2:8102363..8102764
RNA-Seq ExpressionLag0037661
SyntenyLag0037661
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFY85402.1 hypothetical protein Acr_04g0001400 [Actinidia rufa]7.6e-2242.97Show/hide
Query:  PPPNQVVSSP---YPILTPPLNIKLSDSNYLLWKNQLLNHIFAFDMESFINGTS-APQKYLDAAQNQVNPNFLIWQKYNRTLMSWIYSSLNEDKLGEIIG
        P P  + +SP    P +  PL +KL D NY++WK QLLN + A  +E F++G+   P ++LD  Q Q NP F  WQ+YNR +MSWIY+S+NE  LG+I+G
Subjt:  PPPNQVVSSP---YPILTPPLNIKLSDSNYLLWKNQLLNHIFAFDMESFINGTS-APQKYLDAAQNQVNPNFLIWQKYNRTLMSWIYSSLNEDKLGEIIG

Query:  CETAFDIWEHVRMVYESSSTTRIMGLRS
          +A  IWE +  +Y ++S   +  LR+
Subjt:  CETAFDIWEHVRMVYESSSTTRIMGLRS

GFZ12741.1 UBX domain-containing protein [Actinidia rufa]4.5e-2242.97Show/hide
Query:  PPPNQVVSSP---YPILTPPLNIKLSDSNYLLWKNQLLNHIFAFDMESFINGTS-APQKYLDAAQNQVNPNFLIWQKYNRTLMSWIYSSLNEDKLGEIIG
        P P  + +SP    P +  PL +KL D NY++WK QLLN + A  +E F++G+   P ++LD  Q Q NP F  WQ+YNR +MSWIY+S+NE  LG+I+G
Subjt:  PPPNQVVSSP---YPILTPPLNIKLSDSNYLLWKNQLLNHIFAFDMESFINGTS-APQKYLDAAQNQVNPNFLIWQKYNRTLMSWIYSSLNEDKLGEIIG

Query:  CETAFDIWEHVRMVYESSSTTRIMGLRS
          +A  IWE +  +Y ++S   +  LR+
Subjt:  CETAFDIWEHVRMVYESSSTTRIMGLRS

PON47862.1 hypothetical protein TorRG33x02_321990 [Trema orientale]3.4e-2245.22Show/hide
Query:  PILTPPLNIKLSDSNYLLWKNQLLNHIFAFDMESFINGT-SAPQKYLDAAQNQVNPNFLIWQKYNRTLMSWIYSSLNEDKLGEIIGCETAFDIWEHVRMV
        P +  P  IKL   NYL+WKNQLLN I A  +E FI+G+   P ++ D A+  VN  ++ WQ++NR +MSWIY+SL +  +G+I+G  +AF+IWE +  +
Subjt:  PILTPPLNIKLSDSNYLLWKNQLLNHIFAFDMESFINGT-SAPQKYLDAAQNQVNPNFLIWQKYNRTLMSWIYSSLNEDKLGEIIGCETAFDIWEHVRMV

Query:  YESSSTTRIMGLRSQ
        Y SSS  +I  LR++
Subjt:  YESSSTTRIMGLRSQ

RVW56403.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]9.9e-2247.29Show/hide
Query:  PTFPPPNQVVSSPYPILTPPLNIKLSDSNYLLWKNQLLNHIFAFDMESFING-TSAPQKYLDAAQNQVNPNFLIWQKYNRTLMSWIYSSLNEDKLGEIIG
        P F P   +  + YP L+ PL IKL ++N  LWKNQLLN I A  +E FI G T  P K+LD AQ QVNP F+ W++ N  +MSWIY SL    +G I+ 
Subjt:  PTFPPPNQVVSSPYPILTPPLNIKLSDSNYLLWKNQLLNHIFAFDMESFING-TSAPQKYLDAAQNQVNPNFLIWQKYNRTLMSWIYSSLNEDKLGEIIG

Query:  CETAFDIWEHVRMVYESSSTTRIMGLRSQ
         +TA +IW  +  VY+S S T ++ L SQ
Subjt:  CETAFDIWEHVRMVYESSSTTRIMGLRSQ

XP_022155181.1 uncharacterized protein LOC111022315 [Momordica charantia]7.6e-3048.51Show/hide
Query:  PTVPTF--PPPNQVVSSPYPILTPPLNIKLSDSNYLLWKNQLLNHIFAFDMESFINGT-SAPQKYLDAAQNQVNPNFLIWQKYNRTLMSWIYSSLNEDKL
        P  P F   PPN   ++P+P L  PLN+KL+D+N+LLWKNQLLN + A  +  +++GT   P ++LD  Q Q NP +  W++YNR LM WIYSSL+E+K+
Subjt:  PTVPTF--PPPNQVVSSPYPILTPPLNIKLSDSNYLLWKNQLLNHIFAFDMESFINGT-SAPQKYLDAAQNQVNPNFLIWQKYNRTLMSWIYSSLNEDKL

Query:  GEIIGCETAFDIWEHVRMVYESSSTTRIMGLRSQ
        GE++  ET  DIW  +  VY+S +T RIMGL+++
Subjt:  GEIIGCETAFDIWEHVRMVYESSSTTRIMGLRSQ

TrEMBL top hitse value%identityAlignment
A0A2P5BGF8 Uncharacterized protein1.7e-2245.22Show/hide
Query:  PILTPPLNIKLSDSNYLLWKNQLLNHIFAFDMESFINGT-SAPQKYLDAAQNQVNPNFLIWQKYNRTLMSWIYSSLNEDKLGEIIGCETAFDIWEHVRMV
        P +  P  IKL   NYL+WKNQLLN I A  +E FI+G+   P ++ D A+  VN  ++ WQ++NR +MSWIY+SL +  +G+I+G  +AF+IWE +  +
Subjt:  PILTPPLNIKLSDSNYLLWKNQLLNHIFAFDMESFINGT-SAPQKYLDAAQNQVNPNFLIWQKYNRTLMSWIYSSLNEDKLGEIIGCETAFDIWEHVRMV

Query:  YESSSTTRIMGLRSQ
        Y SSS  +I  LR++
Subjt:  YESSSTTRIMGLRSQ

A0A438F8X3 Retrovirus-related Pol polyprotein from transposon RE14.8e-2247.29Show/hide
Query:  PTFPPPNQVVSSPYPILTPPLNIKLSDSNYLLWKNQLLNHIFAFDMESFING-TSAPQKYLDAAQNQVNPNFLIWQKYNRTLMSWIYSSLNEDKLGEIIG
        P F P   +  + YP L+ PL IKL ++N  LWKNQLLN I A  +E FI G T  P K+LD AQ QVNP F+ W++ N  +MSWIY SL    +G I+ 
Subjt:  PTFPPPNQVVSSPYPILTPPLNIKLSDSNYLLWKNQLLNHIFAFDMESFING-TSAPQKYLDAAQNQVNPNFLIWQKYNRTLMSWIYSSLNEDKLGEIIG

Query:  CETAFDIWEHVRMVYESSSTTRIMGLRSQ
         +TA +IW  +  VY+S S T ++ L SQ
Subjt:  CETAFDIWEHVRMVYESSSTTRIMGLRSQ

A0A6J1DQX7 uncharacterized protein LOC1110223153.7e-3048.51Show/hide
Query:  PTVPTF--PPPNQVVSSPYPILTPPLNIKLSDSNYLLWKNQLLNHIFAFDMESFINGT-SAPQKYLDAAQNQVNPNFLIWQKYNRTLMSWIYSSLNEDKL
        P  P F   PPN   ++P+P L  PLN+KL+D+N+LLWKNQLLN + A  +  +++GT   P ++LD  Q Q NP +  W++YNR LM WIYSSL+E+K+
Subjt:  PTVPTF--PPPNQVVSSPYPILTPPLNIKLSDSNYLLWKNQLLNHIFAFDMESFINGT-SAPQKYLDAAQNQVNPNFLIWQKYNRTLMSWIYSSLNEDKL

Query:  GEIIGCETAFDIWEHVRMVYESSSTTRIMGLRSQ
        GE++  ET  DIW  +  VY+S +T RIMGL+++
Subjt:  GEIIGCETAFDIWEHVRMVYESSSTTRIMGLRSQ

A0A7J0EGI5 Uncharacterized protein3.7e-2242.97Show/hide
Query:  PPPNQVVSSP---YPILTPPLNIKLSDSNYLLWKNQLLNHIFAFDMESFINGTS-APQKYLDAAQNQVNPNFLIWQKYNRTLMSWIYSSLNEDKLGEIIG
        P P  + +SP    P +  PL +KL D NY++WK QLLN + A  +E F++G+   P ++LD  Q Q NP F  WQ+YNR +MSWIY+S+NE  LG+I+G
Subjt:  PPPNQVVSSP---YPILTPPLNIKLSDSNYLLWKNQLLNHIFAFDMESFINGTS-APQKYLDAAQNQVNPNFLIWQKYNRTLMSWIYSSLNEDKLGEIIG

Query:  CETAFDIWEHVRMVYESSSTTRIMGLRS
          +A  IWE +  +Y ++S   +  LR+
Subjt:  CETAFDIWEHVRMVYESSSTTRIMGLRS

A0A7J0GPN0 UBX domain-containing protein2.2e-2242.97Show/hide
Query:  PPPNQVVSSP---YPILTPPLNIKLSDSNYLLWKNQLLNHIFAFDMESFINGTS-APQKYLDAAQNQVNPNFLIWQKYNRTLMSWIYSSLNEDKLGEIIG
        P P  + +SP    P +  PL +KL D NY++WK QLLN + A  +E F++G+   P ++LD  Q Q NP F  WQ+YNR +MSWIY+S+NE  LG+I+G
Subjt:  PPPNQVVSSP---YPILTPPLNIKLSDSNYLLWKNQLLNHIFAFDMESFINGTS-APQKYLDAAQNQVNPNFLIWQKYNRTLMSWIYSSLNEDKLGEIIG

Query:  CETAFDIWEHVRMVYESSSTTRIMGLRS
          +A  IWE +  +Y ++S   +  LR+
Subjt:  CETAFDIWEHVRMVYESSSTTRIMGLRS

SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE12.5e-0726.17Show/hide
Query:  KLSDSNYLLWKNQLLNHIFAFDMESFING--TSAPQKYLDAAQNQVNPNFLIWQKYNRTLMSWIYSSLNEDKLGEIIGCETAFDIWEHVRMVYESSSTTR
        KL+ +NYL+W  Q+      +++  F++G  T  P      A  +VNP++  W++ ++ + S +  +++      +    TA  IWE +R +Y + S   
Subjt:  KLSDSNYLLWKNQLLNHIFAFDMESFING--TSAPQKYLDAAQNQVNPNFLIWQKYNRTLMSWIYSSLNEDKLGEIIGCETAFDIWEHVRMVYESSSTTR

Query:  IMGLRSQ
        +  LR+Q
Subjt:  IMGLRSQ

Arabidopsis top hitse value%identityAlignment
AT1G21280.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).4.0e-0524.03Show/hide
Query:  PTVPTFPPPNQVVSSPYPILTPPLNIKLSDSNYLLWKNQLLNHIFAFDMESFINGTSAPQKYLDAAQNQVNPNFLIWQKYNRTLMSWIYSSLNEDKLGEI
        P  P + PP+    S + I      +   + NY+ WK +  + +       FI+GT           +  +P +  W++ N  +M W+ +S+ +  L  +
Subjt:  PTVPTFPPPNQVVSSPYPILTPPLNIKLSDSNYLLWKNQLLNHIFAFDMESFINGTSAPQKYLDAAQNQVNPNFLIWQKYNRTLMSWIYSSLNEDKLGEI

Query:  IGCETAFDIWEHVRMVYESSSTTRIMGLR
        +  ETA  +WE +R V+      +I  LR
Subjt:  IGCETAFDIWEHVRMVYESSSTTRIMGLR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACCCTACTGTTCCTACCTTTCCCCCACCAAACCAAGTTGTTTCTTCACCGTACCCTATCCTCACTCCACCTCTCAATATCAAGCTCTCGGACTCGAACTATTTATT
GTGGAAAAACCAACTTCTCAACCATATATTCGCATTCGACATGGAATCATTCATCAACGGCACTTCAGCTCCACAAAAATACTTGGATGCCGCTCAGAATCAGGTAAATC
CTAACTTTCTTATATGGCAAAAGTATAATAGAACTCTAATGAGTTGGATTTATTCATCGCTGAATGAGGACAAGCTGGGTGAAATAATTGGCTGTGAAACGGCATTTGAT
ATTTGGGAACACGTACGAATGGTTTATGAATCTTCTTCTACGACTCGCATAATGGGTCTTCGTTCGCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTACCCTACTGTTCCTACCTTTCCCCCACCAAACCAAGTTGTTTCTTCACCGTACCCTATCCTCACTCCACCTCTCAATATCAAGCTCTCGGACTCGAACTATTTATT
GTGGAAAAACCAACTTCTCAACCATATATTCGCATTCGACATGGAATCATTCATCAACGGCACTTCAGCTCCACAAAAATACTTGGATGCCGCTCAGAATCAGGTAAATC
CTAACTTTCTTATATGGCAAAAGTATAATAGAACTCTAATGAGTTGGATTTATTCATCGCTGAATGAGGACAAGCTGGGTGAAATAATTGGCTGTGAAACGGCATTTGAT
ATTTGGGAACACGTACGAATGGTTTATGAATCTTCTTCTACGACTCGCATAATGGGTCTTCGTTCGCAATAG
Protein sequenceShow/hide protein sequence
MYPTVPTFPPPNQVVSSPYPILTPPLNIKLSDSNYLLWKNQLLNHIFAFDMESFINGTSAPQKYLDAAQNQVNPNFLIWQKYNRTLMSWIYSSLNEDKLGEIIGCETAFD
IWEHVRMVYESSSTTRIMGLRSQ