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Lag0037764 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0037764
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr2:8954792..8957864
RNA-Seq ExpressionLag0037764
SyntenyLag0037764
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]2.8e-1272.55Show/hide
Query:  MRDCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMRGRGQ
        MRDCPLICTGESGQ  DSI L F GQDR+GSWE + TRWN LLP  R R Q
Subjt:  MRDCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMRGRGQ
KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]1.7e-0971.11Show/hide
Query:  DCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMR
        DCPLI T ESGQ ADS+ L FWGQDR+ SWE + TRWNSLLP  R
Subjt:  DCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMR
KAA0049822.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-0678.79Show/hide
Query:  MRDCPLICTGESGQFADSISLPFWGQDRMGSWE
        +RDCPLICTGESGQ ADSI L FWGQDR+G W+
Subjt:  MRDCPLICTGESGQFADSISLPFWGQDRMGSWE
TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]1.1e-1170.21Show/hide
Query:  MRDCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMR
        +RDCPL CTGESGQ  DSI L FWGQDR+GSWE + TRWNS +P  R
Subjt:  MRDCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMR
TYK08698.1 reverse transcriptase [Cucumis melo var. makuwa]2.0e-0750Show/hide
Query:  MRDCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMRGRGQCSCTDHALVSRLTPS
        +RDCPLICTGESGQ ADSI L FWGQDR+G W+          P + GR   + T    +  L PS
Subjt:  MRDCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMRGRGQCSCTDHALVSRLTPS
TrEMBL top hitse value%identityAlignment
A0A5A7SPG1 Pol protein1.3e-1272.55Show/hide
Query:  MRDCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMRGRGQ
        MRDCPLICTGESGQ  DSI L F GQDR+GSWE + TRWN LLP  R R Q
Subjt:  MRDCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMRGRGQ
A0A5A7U202 Reverse transcriptase6.4e-0778.79Show/hide
Query:  MRDCPLICTGESGQFADSISLPFWGQDRMGSWE
        +RDCPLICTGESGQ ADSI L FWGQDR+G W+
Subjt:  MRDCPLICTGESGQFADSISLPFWGQDRMGSWE
A0A5A7U2P4 Integrase catalytic domain-containing protein8.1e-1071.11Show/hide
Query:  DCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMR
        DCPLI T ESGQ ADS+ L FWGQDR+ SWE + TRWNSLLP  R
Subjt:  DCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMR
A0A5D3C3J6 Gag/pol protein5.1e-1270.21Show/hide
Query:  MRDCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMR
        +RDCPL CTGESGQ  DSI L FWGQDR+GSWE + TRWNS +P  R
Subjt:  MRDCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMR
A0A5D3CBX3 Reverse transcriptase9.9e-0850Show/hide
Query:  MRDCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMRGRGQCSCTDHALVSRLTPS
        +RDCPLICTGESGQ ADSI L FWGQDR+G W+          P + GR   + T    +  L PS
Subjt:  MRDCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMRGRGQCSCTDHALVSRLTPS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGATTGTCCTTTGATTTGTACGGGTGAGAGTGGCCAGTTCGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAATGGGGAGCTGGGAACGTAGTCTTAC
AAGATGGAATTCACTCCTTCCTGATATGAGGGGACGTGGTCAGTGCAGTTGCACAGATCACGCCCTAGTCTCACGCCTCACTCCCTCTCTATCGCTCTCTCCTTCTGGTT
TTGCTTTGTGGCAGAGGAAATCAGAGTGTTGCATCCAGAATGCTGTATTCTTGGGAGAAATTCAGAGAGAATTGGCGAAACAGTCAAGGGTTTCTACAAAGGCAATTTTG
GACCACCCCGATATACAAGGAGCTGACGAGGACAATCGGGGAGAAATCGGGCTGAAAGATGGACCAAGGAGGCAAAACCGGCGAGTGGGATGGGCCAAGACCGAAGGGGT
CGGGTTTTTGGCCCGACCCCCTGCTCGACCTCGGCCCATGGCCGAGGCCGAGTCCGTTCGATGCCGTTTGGTCCCCACCGCCTTTGGCCGCCTCGGTTTCGCCTGGTTTG
ACCTAAAACGCCTCCGAATCCCTAAAAACCAAGGAGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGGATTGTCCTTTGATTTGTACGGGTGAGAGTGGCCAGTTCGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAATGGGGAGCTGGGAACGTAGTCTTAC
AAGATGGAATTCACTCCTTCCTGATATGAGGGGACGTGGTCAGTGCAGTTGCACAGATCACGCCCTAGTCTCACGCCTCACTCCCTCTCTATCGCTCTCTCCTTCTGGTT
TTGCTTTGTGGCAGAGGAAATCAGAGTGTTGCATCCAGAATGCTGTATTCTTGGGAGAAATTCAGAGAGAATTGGCGAAACAGTCAAGGGTTTCTACAAAGGCAATTTTG
GACCACCCCGATATACAAGGAGCTGACGAGGACAATCGGGGAGAAATCGGGCTGAAAGATGGACCAAGGAGGCAAAACCGGCGAGTGGGATGGGCCAAGACCGAAGGGGT
CGGGTTTTTGGCCCGACCCCCTGCTCGACCTCGGCCCATGGCCGAGGCCGAGTCCGTTCGATGCCGTTTGGTCCCCACCGCCTTTGGCCGCCTCGGTTTCGCCTGGTTTG
ACCTAAAACGCCTCCGAATCCCTAAAAACCAAGGAGGATGA
Protein sequenceShow/hide protein sequence
MRDCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMRGRGQCSCTDHALVSRLTPSLSLSPSGFALWQRKSECCIQNAVFLGEIQRELAKQSRVSTKAIL
DHPDIQGADEDNRGEIGLKDGPRRQNRRVGWAKTEGVGFLARPPARPRPMAEAESVRCRLVPTAFGRLGFAWFDLKRLRIPKNQGG