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Lag0037832 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0037832
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr2:9616800..9620796
RNA-Seq ExpressionLag0037832
SyntenyLag0037832
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5447348.1 hypothetical protein F2P56_032905 [Juglans regia]3.1e-2455.56Show/hide
Query:  LVSAEQSAFVSGRLISDNAIIRFECLHALNSKIRGKTSKVAMKLNMSKAYDLMEWSFLRQMMLRMGFQTRWVELVMSCVESVWFVVLLNGKPSLEFLPS
        ++S+ QSAFV GRLISDN I+ FE LH ++S++ GK   +A+KL+MSKAYD +EW FL+++ML+MGF T WV+LVM+CVE+V + ++LNG P   F+P+
Subjt:  LVSAEQSAFVSGRLISDNAIIRFECLHALNSKIRGKTSKVAMKLNMSKAYDLMEWSFLRQMMLRMGFQTRWVELVMSCVESVWFVVLLNGKPSLEFLPS

XP_018829832.2 uncharacterized protein LOC108997902 [Juglans regia]1.0e-2255.56Show/hide
Query:  LVSAEQSAFVSGRLISDNAIIRFECLHALNSKIRGKTSKVAMKLNMSKAYDLMEWSFLRQMMLRMGFQTRWVELVMSCVESVWFVVLLNGKPSLEFLPS
        ++S  QSAF+ GR+ISDN I+ FE LH++N K+ G+   +AMKL++SKAYD +EWSFLR  + ++GF   WVELVM CVESV + +L+NG P  EF PS
Subjt:  LVSAEQSAFVSGRLISDNAIIRFECLHALNSKIRGKTSKVAMKLNMSKAYDLMEWSFLRQMMLRMGFQTRWVELVMSCVESVWFVVLLNGKPSLEFLPS

XP_022157437.1 uncharacterized protein LOC111024135 [Momordica charantia]1.8e-2459.6Show/hide
Query:  LVSAEQSAFVSGRLISDNAIIRFECLHALNSKIRGKTSKVAMKLNMSKAYDLMEWSFLRQMMLRMGFQTRWVELVMSCVESVWFVVLLNGKPSLEFLPS
        ++S  QSAFV GR I+DNAII FEC++A+ +K  GK  +VAMKL+MSKAYD +EW +LR +M++MGF  RWV+L+M+CVESV F VL+NG P  EF P+
Subjt:  LVSAEQSAFVSGRLISDNAIIRFECLHALNSKIRGKTSKVAMKLNMSKAYDLMEWSFLRQMMLRMGFQTRWVELVMSCVESVWFVVLLNGKPSLEFLPS

XP_040996249.1 uncharacterized protein LOC121242444 [Juglans microcarpa x Juglans regia]5.9e-2356.57Show/hide
Query:  LVSAEQSAFVSGRLISDNAIIRFECLHALNSKIRGKTSKVAMKLNMSKAYDLMEWSFLRQMMLRMGFQTRWVELVMSCVESVWFVVLLNGKPSLEFLPS
        ++S  QSAF+  RLISDN I+ FE LH++N K+ G+   +AMKL+MSKAYD +EWSFLR  + +MGF   W+ELVM CVESV + +L+NG P  EF PS
Subjt:  LVSAEQSAFVSGRLISDNAIIRFECLHALNSKIRGKTSKVAMKLNMSKAYDLMEWSFLRQMMLRMGFQTRWVELVMSCVESVWFVVLLNGKPSLEFLPS

XP_041027032.1 uncharacterized protein LOC121267250 [Juglans microcarpa x Juglans regia]1.0e-2255.88Show/hide
Query:  LLVLVSAEQSAFVSGRLISDNAIIRFECLHALNSKIRGKTSKVAMKLNMSKAYDLMEWSFLRQMMLRMGFQTRWVELVMSCVESVWFVVLLNGKPSLEFL
        L  ++S  QSAF+ GRLIS N I+ FE LH++N K+ G+   +AMKL+MSKAYD +EWSFLR  + +MGF   WVELVM CVES+ + +L+NG P  EF 
Subjt:  LLVLVSAEQSAFVSGRLISDNAIIRFECLHALNSKIRGKTSKVAMKLNMSKAYDLMEWSFLRQMMLRMGFQTRWVELVMSCVESVWFVVLLNGKPSLEFL

Query:  PS
        PS
Subjt:  PS

TrEMBL top hitse value%identityAlignment
A0A2I4EKE3 uncharacterized protein LOC1089903671.4e-2252.53Show/hide
Query:  LVSAEQSAFVSGRLISDNAIIRFECLHALNSKIRGKTSKVAMKLNMSKAYDLMEWSFLRQMMLRMGFQTRWVELVMSCVESVWFVVLLNGKPSLEFLPS
        ++S  QSAF++GRLI+DN II +E LH++  + +GK   +A+KL+MSKAYD +EW FLR +ML +GF  RWVEL+M CV SV + VL+NG+P  + +P+
Subjt:  LVSAEQSAFVSGRLISDNAIIRFECLHALNSKIRGKTSKVAMKLNMSKAYDLMEWSFLRQMMLRMGFQTRWVELVMSCVESVWFVVLLNGKPSLEFLPS

A0A2I4FDW3 uncharacterized protein LOC1089979024.9e-2355.56Show/hide
Query:  LVSAEQSAFVSGRLISDNAIIRFECLHALNSKIRGKTSKVAMKLNMSKAYDLMEWSFLRQMMLRMGFQTRWVELVMSCVESVWFVVLLNGKPSLEFLPS
        ++S  QSAF+ GR+ISDN I+ FE LH++N K+ G+   +AMKL++SKAYD +EWSFLR  + ++GF   WVELVM CVESV + +L+NG P  EF PS
Subjt:  LVSAEQSAFVSGRLISDNAIIRFECLHALNSKIRGKTSKVAMKLNMSKAYDLMEWSFLRQMMLRMGFQTRWVELVMSCVESVWFVVLLNGKPSLEFLPS

A0A2N9EM59 Reverse transcriptase domain-containing protein1.4e-2254.55Show/hide
Query:  LVSAEQSAFVSGRLISDNAIIRFECLHALNSKIRGKTSKVAMKLNMSKAYDLMEWSFLRQMMLRMGFQTRWVELVMSCVESVWFVVLLNGKPSLEFLPS
        ++S  QSAFV GRLISDN ++ FE LH + +K +GK++ +A KL+MSKAYD +EW +L  MM+RMGF  RWV L+M+C+ SV + VL NG P+  F PS
Subjt:  LVSAEQSAFVSGRLISDNAIIRFECLHALNSKIRGKTSKVAMKLNMSKAYDLMEWSFLRQMMLRMGFQTRWVELVMSCVESVWFVVLLNGKPSLEFLPS

A0A2N9IP69 Reverse transcriptase domain-containing protein4.1e-2250Show/hide
Query:  FTMWLLVLVSAEQSAFVSGRLISDNAIIRFECLHALNSKIRGKTSKVAMKLNMSKAYDLMEWSFLRQMMLRMGFQTRWVELVMSCVESVWFVVLLNGKPS
        F   L  ++S  QSAFV GRLI+DN +I FE LH +N++  GK   +A+KL+MSKAYD +EW+FL+Q+ML+MGF + WV L+M C+ +V + +L+NG+P+
Subjt:  FTMWLLVLVSAEQSAFVSGRLISDNAIIRFECLHALNSKIRGKTSKVAMKLNMSKAYDLMEWSFLRQMMLRMGFQTRWVELVMSCVESVWFVVLLNGKPS

Query:  LEFLPS
           +PS
Subjt:  LEFLPS

A0A6J1DUG8 uncharacterized protein LOC1110241358.9e-2559.6Show/hide
Query:  LVSAEQSAFVSGRLISDNAIIRFECLHALNSKIRGKTSKVAMKLNMSKAYDLMEWSFLRQMMLRMGFQTRWVELVMSCVESVWFVVLLNGKPSLEFLPS
        ++S  QSAFV GR I+DNAII FEC++A+ +K  GK  +VAMKL+MSKAYD +EW +LR +M++MGF  RWV+L+M+CVESV F VL+NG P  EF P+
Subjt:  LVSAEQSAFVSGRLISDNAIIRFECLHALNSKIRGKTSKVAMKLNMSKAYDLMEWSFLRQMMLRMGFQTRWVELVMSCVESVWFVVLLNGKPSLEFLPS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G20520.1 RNA binding;RNA-directed DNA polymerases5.4e-0630.34Show/hide
Query:  MVRRLSRLDLFTMWLLVLVSAEQSAFVSGRLISDNAIIRFECLHALNSKIRGKTSKVAMKLNMSKAYDLMEWSFLRQMMLRMGFQTRWV
        MV RL  L      +  L+   Q++F+ GR+ +DN +   E +H++  K +G    + +KL++ KAYD + W +L   ++  GF   W+
Subjt:  MVRRLSRLDLFTMWLLVLVSAEQSAFVSGRLISDNAIIRFECLHALNSKIRGKTSKVAMKLNMSKAYDLMEWSFLRQMMLRMGFQTRWV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAACCGACGAGTGGAACGGACCAAGACTTAGCCCGACCCGAGCATGAGCAGTTTTCCGTTCTGCAGGCCACGTCTCGGTTTTCCGTTTTGCAGGCTACGTCTTC
CCCCTCATCAATAAATTTACCATTGGTGGCACGTGACAAACGGCGTAGTCGTGGGTCTGCGTTCACGCCGTTTTTGGGTCTTGGTTTCAAGTTCAGCCTTTGTCGGATTA
ACGTCGTTCCGCCGCCGCCTGCATACCCTCCACGAATGTCGCCGTCTGGGTTTCGTTTCAGACTGATTTCGAGAGAAAGAGAGGGAGATGGCGAGCAGACCCAAGAGAGG
CGGCGCGAGGACGGAGAGCGGCGAATGGCAGAACGGATTCGTGGCTGCTGGTTCGCGGATGAGGCATCGACGCCGATGGTTCGCAGGTTGTCGCGATTGGATCTGTTCAC
GATGTGGCTGCTGGTTCTGGTCTCTGCTGAGCAATCGGCCTTCGTGTCTGGACGATTGATTTCAGATAATGCGATCATCAGATTCGAGTGCTTGCATGCGCTTAATAGTA
AAATAAGAGGGAAAACTAGTAAGGTGGCAATGAAGTTGAACATGAGCAAGGCATATGATTTAATGGAATGGAGTTTTCTAAGGCAAATGATGCTTCGGATGGGGTTTCAG
ACAAGATGGGTCGAGTTAGTGATGAGTTGTGTTGAGTCGGTTTGGTTCGTTGTTTTGCTAAATGGGAAGCCGTCGTTAGAATTCCTGCCTTCCCCAAGACTTCATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAACCGACGAGTGGAACGGACCAAGACTTAGCCCGACCCGAGCATGAGCAGTTTTCCGTTCTGCAGGCCACGTCTCGGTTTTCCGTTTTGCAGGCTACGTCTTC
CCCCTCATCAATAAATTTACCATTGGTGGCACGTGACAAACGGCGTAGTCGTGGGTCTGCGTTCACGCCGTTTTTGGGTCTTGGTTTCAAGTTCAGCCTTTGTCGGATTA
ACGTCGTTCCGCCGCCGCCTGCATACCCTCCACGAATGTCGCCGTCTGGGTTTCGTTTCAGACTGATTTCGAGAGAAAGAGAGGGAGATGGCGAGCAGACCCAAGAGAGG
CGGCGCGAGGACGGAGAGCGGCGAATGGCAGAACGGATTCGTGGCTGCTGGTTCGCGGATGAGGCATCGACGCCGATGGTTCGCAGGTTGTCGCGATTGGATCTGTTCAC
GATGTGGCTGCTGGTTCTGGTCTCTGCTGAGCAATCGGCCTTCGTGTCTGGACGATTGATTTCAGATAATGCGATCATCAGATTCGAGTGCTTGCATGCGCTTAATAGTA
AAATAAGAGGGAAAACTAGTAAGGTGGCAATGAAGTTGAACATGAGCAAGGCATATGATTTAATGGAATGGAGTTTTCTAAGGCAAATGATGCTTCGGATGGGGTTTCAG
ACAAGATGGGTCGAGTTAGTGATGAGTTGTGTTGAGTCGGTTTGGTTCGTTGTTTTGCTAAATGGGAAGCCGTCGTTAGAATTCCTGCCTTCCCCAAGACTTCATTAG
Protein sequenceShow/hide protein sequence
MEKPTSGTDQDLARPEHEQFSVLQATSRFSVLQATSSPSSINLPLVARDKRRSRGSAFTPFLGLGFKFSLCRINVVPPPPAYPPRMSPSGFRFRLISREREGDGEQTQER
RREDGERRMAERIRGCWFADEASTPMVRRLSRLDLFTMWLLVLVSAEQSAFVSGRLISDNAIIRFECLHALNSKIRGKTSKVAMKLNMSKAYDLMEWSFLRQMMLRMGFQ
TRWVELVMSCVESVWFVVLLNGKPSLEFLPSPRLH