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Lag0037872 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0037872
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr2:10051733..10052251
RNA-Seq ExpressionLag0037872
SyntenyLag0037872
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.9e-1236.59Show/hide
Query:  LKKTGACSTGSLTKELA----SCKNFTNSDLYRQLWKGSMPKNVKFFMWDLSHASINTVDVVQRKMPLMTLSPSCCCLSVKDQESQNHLFSFCSYAAAFW
        L       T S+ + +A    S  NF + +LY+ LWK   PK  KFF+W L H  INT D +Q+++P  TLSP+ C +  K QE  NHLF  C Y+   W
Subjt:  LKKTGACSTGSLTKELA----SCKNFTNSDLYRQLWKGSMPKNVKFFMWDLSHASINTVDVVQRKMPLMTLSPSCCCLSVKDQESQNHLFSFCSYAAAFW

Query:  DILQQAFGWQFVWPGDIFTLLKS
           +    W    P D+ +L+++
Subjt:  DILQQAFGWQFVWPGDIFTLLKS

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]9.8e-1438.89Show/hide
Query:  LGPLKKTGACSTGSLTKEL----ASCKNFTNSDLYRQLWKGSMPKNVKFFMWDLSHASINTVDVVQRKMPLMTLSPSCCCLSVKDQESQNHLFSFCSYAA
        L  L       T S+ K+L    AS  NF +  LY+ LWK   PK  KFF+W L H  INT D +Q+++P  TLSP+ C +  K QE  NHLF  C Y+ 
Subjt:  LGPLKKTGACSTGSLTKEL----ASCKNFTNSDLYRQLWKGSMPKNVKFFMWDLSHASINTVDVVQRKMPLMTLSPSCCCLSVKDQESQNHLFSFCSYAA

Query:  AFWDILQQAFGWQFVWPGDIFTLLKS
          W   Q    W    P D+ +L ++
Subjt:  AFWDILQQAFGWQFVWPGDIFTLLKS

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]9.8e-1438.89Show/hide
Query:  LGPLKKTGACSTGSLTKEL----ASCKNFTNSDLYRQLWKGSMPKNVKFFMWDLSHASINTVDVVQRKMPLMTLSPSCCCLSVKDQESQNHLFSFCSYAA
        L  L       T S+ K+L    AS  NF +  LY+ LWK   PK  KFF+W L H  INT D +Q+++P  TLSP+ C +  K QE  NHLF  C Y+ 
Subjt:  LGPLKKTGACSTGSLTKEL----ASCKNFTNSDLYRQLWKGSMPKNVKFFMWDLSHASINTVDVVQRKMPLMTLSPSCCCLSVKDQESQNHLFSFCSYAA

Query:  AFWDILQQAFGWQFVWPGDIFTLLKS
          W   Q    W    P D+ +L ++
Subjt:  AFWDILQQAFGWQFVWPGDIFTLLKS

KAA0046762.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.1e-1235.34Show/hide
Query:  LTKELASCKNFTNSDLYRQLWKGSMPKNVKFFMWDLSHASINTVDVVQRKMPLMTLSPSCCCLSVKDQESQNHLFSFCSYAAAFWDILQQAFGWQFVWPG
        ++++L        S L   +WK ++P  +KFFMW L    INT++VVQ +MP + L PS C L  KD ES  HLF  C      W  LQ AF        
Subjt:  LTKELASCKNFTNSDLYRQLWKGSMPKNVKFFMWDLSHASINTVDVVQRKMPLMTLSPSCCCLSVKDQESQNHLFSFCSYAAAFWDILQQAFGWQFVWPG

Query:  --DIFTLLKSSLVGHPFKREKKVLWCKFIYAFF
          D+F         H F   +KV++C  I  F+
Subjt:  --DIFTLLKSSLVGHPFKREKKVLWCKFIYAFF

TQD89699.1 hypothetical protein C1H46_024693 [Malus baccata]2.2e-1337.39Show/hide
Query:  YRQLWKGSMPKNVKFFMWDLSHASINTVDVVQRKMPLMTLSPSCCCLSVKDQESQNHLFSFCSYAAAFWDILQQAFGWQFVWPGDIFTLLKSSLVGHPFK
        Y Q+WK  +P  VK  +W +++ ++NT D +QR+ PLM LSP  C L    +ES NH+F  CSY+   W  L Q     +V P   F LL ++      +
Subjt:  YRQLWKGSMPKNVKFFMWDLSHASINTVDVVQRKMPLMTLSPSCCCLSVKDQESQNHLFSFCSYAAAFWDILQQAFGWQFVWPGDIFTLLKSSLVGHPFK

Query:  REKKVLWCKFIYAFF
        ++ KVLW   + A F
Subjt:  REKKVLWCKFIYAFF

TrEMBL top hitse value%identityAlignment
A0A540LTR6 zf-RVT domain-containing protein1.1e-1337.39Show/hide
Query:  YRQLWKGSMPKNVKFFMWDLSHASINTVDVVQRKMPLMTLSPSCCCLSVKDQESQNHLFSFCSYAAAFWDILQQAFGWQFVWPGDIFTLLKSSLVGHPFK
        Y Q+WK  +P  VK  +W +++ ++NT D +QR+ PLM LSP  C L    +ES NH+F  CSY+   W  L Q     +V P   F LL ++      +
Subjt:  YRQLWKGSMPKNVKFFMWDLSHASINTVDVVQRKMPLMTLSPSCCCLSVKDQESQNHLFSFCSYAAAFWDILQQAFGWQFVWPGDIFTLLKSSLVGHPFK

Query:  REKKVLWCKFIYAFF
        ++ KVLW   + A F
Subjt:  REKKVLWCKFIYAFF

A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein9.0e-1336.59Show/hide
Query:  LKKTGACSTGSLTKELA----SCKNFTNSDLYRQLWKGSMPKNVKFFMWDLSHASINTVDVVQRKMPLMTLSPSCCCLSVKDQESQNHLFSFCSYAAAFW
        L       T S+ + +A    S  NF + +LY+ LWK   PK  KFF+W L H  INT D +Q+++P  TLSP+ C +  K QE  NHLF  C Y+   W
Subjt:  LKKTGACSTGSLTKELA----SCKNFTNSDLYRQLWKGSMPKNVKFFMWDLSHASINTVDVVQRKMPLMTLSPSCCCLSVKDQESQNHLFSFCSYAAAFW

Query:  DILQQAFGWQFVWPGDIFTLLKS
           +    W    P D+ +L+++
Subjt:  DILQQAFGWQFVWPGDIFTLLKS

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein4.8e-1438.89Show/hide
Query:  LGPLKKTGACSTGSLTKEL----ASCKNFTNSDLYRQLWKGSMPKNVKFFMWDLSHASINTVDVVQRKMPLMTLSPSCCCLSVKDQESQNHLFSFCSYAA
        L  L       T S+ K+L    AS  NF +  LY+ LWK   PK  KFF+W L H  INT D +Q+++P  TLSP+ C +  K QE  NHLF  C Y+ 
Subjt:  LGPLKKTGACSTGSLTKEL----ASCKNFTNSDLYRQLWKGSMPKNVKFFMWDLSHASINTVDVVQRKMPLMTLSPSCCCLSVKDQESQNHLFSFCSYAA

Query:  AFWDILQQAFGWQFVWPGDIFTLLKS
          W   Q    W    P D+ +L ++
Subjt:  AFWDILQQAFGWQFVWPGDIFTLLKS

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein4.8e-1438.89Show/hide
Query:  LGPLKKTGACSTGSLTKEL----ASCKNFTNSDLYRQLWKGSMPKNVKFFMWDLSHASINTVDVVQRKMPLMTLSPSCCCLSVKDQESQNHLFSFCSYAA
        L  L       T S+ K+L    AS  NF +  LY+ LWK   PK  KFF+W L H  INT D +Q+++P  TLSP+ C +  K QE  NHLF  C Y+ 
Subjt:  LGPLKKTGACSTGSLTKEL----ASCKNFTNSDLYRQLWKGSMPKNVKFFMWDLSHASINTVDVVQRKMPLMTLSPSCCCLSVKDQESQNHLFSFCSYAA

Query:  AFWDILQQAFGWQFVWPGDIFTLLKS
          W   Q    W    P D+ +L ++
Subjt:  AFWDILQQAFGWQFVWPGDIFTLLKS

A0A5A7TTK1 LINE-1 retrotransposable element ORF2 protein5.3e-1335.34Show/hide
Query:  LTKELASCKNFTNSDLYRQLWKGSMPKNVKFFMWDLSHASINTVDVVQRKMPLMTLSPSCCCLSVKDQESQNHLFSFCSYAAAFWDILQQAFGWQFVWPG
        ++++L        S L   +WK ++P  +KFFMW L    INT++VVQ +MP + L PS C L  KD ES  HLF  C      W  LQ AF        
Subjt:  LTKELASCKNFTNSDLYRQLWKGSMPKNVKFFMWDLSHASINTVDVVQRKMPLMTLSPSCCCLSVKDQESQNHLFSFCSYAAAFWDILQQAFGWQFVWPG

Query:  --DIFTLLKSSLVGHPFKREKKVLWCKFIYAFF
          D+F         H F   +KV++C  I  F+
Subjt:  --DIFTLLKSSLVGHPFKREKKVLWCKFIYAFF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAGAAACTAGTGAATGGGCCAACATGTCTCACCATCTATACACCTTTTACCTCAAAGATGAGGACGACACATGGGCTTGGACCCTTGAAAAAAACAGGAGCTTG
CTCTACTGGCTCTCTTACTAAGGAATTGGCCTCCTGCAAAAACTTCACAAATTCAGATCTCTACAGACAGCTATGGAAGGGATCTATGCCTAAAAATGTCAAGTTTTTTA
TGTGGGACCTTAGTCATGCTTCCATAAACACTGTCGATGTTGTTCAACGTAAAATGCCTTTGATGACACTTTCTCCTAGTTGTTGTTGTTTATCTGTCAAAGACCAGGAA
TCCCAAAATCATCTCTTTAGCTTTTGCTCTTATGCGGCTGCATTTTGGGACATTCTCCAACAAGCTTTTGGGTGGCAATTTGTTTGGCCGGGAGACATCTTTACCCTCTT
AAAATCTTCTCTTGTGGGGCATCCTTTCAAAAGAGAAAAGAAAGTCTTATGGTGCAAATTCATATATGCCTTCTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAGAAACTAGTGAATGGGCCAACATGTCTCACCATCTATACACCTTTTACCTCAAAGATGAGGACGACACATGGGCTTGGACCCTTGAAAAAAACAGGAGCTTG
CTCTACTGGCTCTCTTACTAAGGAATTGGCCTCCTGCAAAAACTTCACAAATTCAGATCTCTACAGACAGCTATGGAAGGGATCTATGCCTAAAAATGTCAAGTTTTTTA
TGTGGGACCTTAGTCATGCTTCCATAAACACTGTCGATGTTGTTCAACGTAAAATGCCTTTGATGACACTTTCTCCTAGTTGTTGTTGTTTATCTGTCAAAGACCAGGAA
TCCCAAAATCATCTCTTTAGCTTTTGCTCTTATGCGGCTGCATTTTGGGACATTCTCCAACAAGCTTTTGGGTGGCAATTTGTTTGGCCGGGAGACATCTTTACCCTCTT
AAAATCTTCTCTTGTGGGGCATCCTTTCAAAAGAGAAAAGAAAGTCTTATGGTGCAAATTCATATATGCCTTCTTTTGA
Protein sequenceShow/hide protein sequence
MKKKLVNGPTCLTIYTPFTSKMRTTHGLGPLKKTGACSTGSLTKELASCKNFTNSDLYRQLWKGSMPKNVKFFMWDLSHASINTVDVVQRKMPLMTLSPSCCCLSVKDQE
SQNHLFSFCSYAAAFWDILQQAFGWQFVWPGDIFTLLKSSLVGHPFKREKKVLWCKFIYAFF