; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0037909 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0037909
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptiontranslation initiation factor IF-1, chloroplastic-like
Genome locationchr2:10499159..10499590
RNA-Seq ExpressionLag0037909
SyntenyLag0037909
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0043022 - ribosome binding (molecular function)
InterPro domainsIPR004368 - Translation initiation factor IF-1
IPR006196 - RNA-binding domain, S1, IF1 type
IPR012340 - Nucleic acid-binding, OB-fold
IPR022967 - RNA-binding domain, S1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064332.1 translation initiation factor IF-1 [Cucumis melo var. makuwa]2.9e-5986.71Show/hide
Query:  MSSSNLLQFPLLQLHLRPPSTLLFPAIKSHLSVVSIPSPTSQFLHNPSSGPARFALMAKSPKTDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS
        MSS+NLLQFPLLQ H RPPSTLLFP +KSHLSVVSI  PTSQFLH PS  P  FALMAKSPK D+SEQK SHEGSVVESLPNGMFRV LDN+DLILGYIS
Subjt:  MSSSNLLQFPLLQLHLRPPSTLLFPAIKSHLSVVSIPSPTSQFLHNPSSGPARFALMAKSPKTDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSPKDSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLR+S KDSSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSPKDSSS

KAG7024835.1 Translation initiation factor IF-1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]2.7e-5785.4Show/hide
Query:  MSSSNLLQFPLLQLHLRPPSTLLFPAIKSHLSVVSIPSPTSQFLHNPSSGPARFALMAKSPKTDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS
        MS++NLL+FPLLQLH RPPSTL FPAIKSHLSVVSI  PTSQFL NPS GPARFALMAK PK+DS+EQKWS+EGS+V+SLPNGMFRV LDN+DLILGYI 
Subjt:  MSSSNLLQFPLLQLHLRPPSTLLFPAIKSHLSVVSIPSPTSQFLHNPSSGPARFALMAKSPKTDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR R+S
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNS

XP_022976599.1 uncharacterized protein LOC111476947 [Cucurbita maxima]2.1e-5786.13Show/hide
Query:  MSSSNLLQFPLLQLHLRPPSTLLFPAIKSHLSVVSIPSPTSQFLHNPSSGPARFALMAKSPKTDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS
        MSS+NLL+FPLL LH RPPSTL FPAIKSHLSVVSI  PTSQFL NPS GPARFALMAK PK+DS+EQKWS+EGS+VESLPNGMFRV LDN+DLILGYI 
Subjt:  MSSSNLLQFPLLQLHLRPPSTLLFPAIKSHLSVVSIPSPTSQFLHNPSSGPARFALMAKSPKTDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR R+S
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNS

XP_023535140.1 uncharacterized protein LOC111796655 isoform X1 [Cucurbita pepo subsp. pepo]2.1e-5786.13Show/hide
Query:  MSSSNLLQFPLLQLHLRPPSTLLFPAIKSHLSVVSIPSPTSQFLHNPSSGPARFALMAKSPKTDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS
        MSS+NLL+FPLLQLH RPPSTL FPAIKSHL VVSI  PTSQFL NPS GPARFALMAK PK+DS+EQKWS+EGS+VESLPNGMFRV LDN+DLILGYI 
Subjt:  MSSSNLLQFPLLQLHLRPPSTLLFPAIKSHLSVVSIPSPTSQFLHNPSSGPARFALMAKSPKTDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR R+S
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNS

XP_038899010.1 translation initiation factor IF-1, chloroplastic [Benincasa hispida]1.7e-5986.01Show/hide
Query:  MSSSNLLQFPLLQLHLRPPSTLLFPAIKSHLSVVSIPSPTSQFLHNPSSGPARFALMAKSPKTDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS
        MSS+ LLQFPLLQ H RPPSTL FPA+KSHLSVVSI  PT+QFLHNPS   A F LMAKSPK D+SEQKWSHEGSVVESLPNGMFRV LDN+DLILGYIS
Subjt:  MSSSNLLQFPLLQLHLRPPSTLLFPAIKSHLSVVSIPSPTSQFLHNPSSGPARFALMAKSPKTDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSPKDSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLR+S KDSSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSPKDSSS

TrEMBL top hitse value%identityAlignment
A0A0A0L4Q7 S1-like domain-containing protein1.9e-5683.92Show/hide
Query:  MSSSNLLQFPLLQLHLRPPSTLLFPAIKSHLSVVSIPSPTSQFLHNPSSGPARFALMAKSPKTDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS
        MSS+NLLQFPLLQ H RPPSTLLFPA+KSHLS+ SI  PTSQFLH PS     F LMAKSPK D+SEQK SHEGSVVESLPNGMFRV LDN+DLILGYIS
Subjt:  MSSSNLLQFPLLQLHLRPPSTLLFPAIKSHLSVVSIPSPTSQFLHNPSSGPARFALMAKSPKTDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSPKDSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR+R S KDSSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSPKDSSS

A0A5A7V7J3 Translation initiation factor IF-11.4e-5986.71Show/hide
Query:  MSSSNLLQFPLLQLHLRPPSTLLFPAIKSHLSVVSIPSPTSQFLHNPSSGPARFALMAKSPKTDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS
        MSS+NLLQFPLLQ H RPPSTLLFP +KSHLSVVSI  PTSQFLH PS  P  FALMAKSPK D+SEQK SHEGSVVESLPNGMFRV LDN+DLILGYIS
Subjt:  MSSSNLLQFPLLQLHLRPPSTLLFPAIKSHLSVVSIPSPTSQFLHNPSSGPARFALMAKSPKTDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSPKDSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLR+S KDSSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSPKDSSS

A0A6J1FET6 uncharacterized protein LOC1114432991.9e-5684.67Show/hide
Query:  MSSSNLLQFPLLQLHLRPPSTLLFPAIKSHLSVVSIPSPTSQFLHNPSSGPARFALMAKSPKTDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS
        MSS+NLL+FPLLQLH RPPSTL FPAIKSHLSVVSI   TSQFL NPS GPARFALMAK PK+DS+EQKWS+EGS+V+SLPNGMFRV LDN+DLILGYI 
Subjt:  MSSSNLLQFPLLQLHLRPPSTLLFPAIKSHLSVVSIPSPTSQFLHNPSSGPARFALMAKSPKTDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNS
        GKIRKNFVRILPGDRVRVEVSRYDS KGRIVYR R+S
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNS

A0A6J1FLU6 translation initiation factor IF-1, chloroplastic-like6.5e-5783.92Show/hide
Query:  MSSSNLLQFPLLQLHLRPPSTLLFPAIKSHLSVVSIPSPTSQFLHNPSSGPARFALMAKSPKTDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS
        MSS+NLLQFPLLQ   RPPST LFPAIKSH+SVVSIP P+SQFLHNPS GP  F  MAKSPK++SSEQK+SHEGSV+ESLPNGMFRV LDN+DLILGYIS
Subjt:  MSSSNLLQFPLLQLHLRPPSTLLFPAIKSHLSVVSIPSPTSQFLHNPSSGPARFALMAKSPKTDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSPKDSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR R S KD SS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSPKDSSS

A0A6J1IP00 uncharacterized protein LOC1114769471.0e-5786.13Show/hide
Query:  MSSSNLLQFPLLQLHLRPPSTLLFPAIKSHLSVVSIPSPTSQFLHNPSSGPARFALMAKSPKTDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS
        MSS+NLL+FPLL LH RPPSTL FPAIKSHLSVVSI  PTSQFL NPS GPARFALMAK PK+DS+EQKWS+EGS+VESLPNGMFRV LDN+DLILGYI 
Subjt:  MSSSNLLQFPLLQLHLRPPSTLLFPAIKSHLSVVSIPSPTSQFLHNPSSGPARFALMAKSPKTDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR R+S
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNS

SwissProt top hitse value%identityAlignment
A0A370 Translation initiation factor IF-1, chloroplastic7.2e-2978.67Show/hide
Query:  EQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSPKDS
        EQKW+HEG + ESLPNGMFRV LDN+DLILGY+SGKIR++F+RILPGDRV++EVSRYDST+GRI+YRLRN  KDS
Subjt:  EQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSPKDS

Q7ICQ5 Translation initiation factor IF-1, chloroplastic1.6e-2878.67Show/hide
Query:  EQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSPKDS
        EQKW HEG + ESLPNGMFRV LDN+DLILGY+SGKIR++F+RILPGDRV++EVSRYDST+GRI+YRLRN  KDS
Subjt:  EQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSPKDS

Q94KR7 Translation initiation factor IF-1, chloroplastic1.0e-3073Show/hide
Query:  TSQFLHNPSSGPARFALMAKS-PKTD-SSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNS
        T  FL  P   PA  AL A S  K D S EQKW HEG ++ESLPNGMFRV LDN+DLILGYISGKIRKN+VRILPGDRV+VEV+RYDS+KGRIVYRLR+S
Subjt:  TSQFLHNPSSGPARFALMAKS-PKTD-SSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNS

Q94KR9 Translation initiation factor IF-1, chloroplastic4.2e-2980.28Show/hide
Query:  SSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLR
        S EQKW+HEGS+ ESLPNGMFRV LDN D++LGYISGKIRKNF+R+LPGDRV++EVSRYDS+KGRI+YRLR
Subjt:  SSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLR

Q94PL3 Translation initiation factor IF-1, chloroplastic1.6e-2878.67Show/hide
Query:  EQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSPKDS
        EQKW HEG + ESLPNGMFRV LDN+DLILGY+SGKIR++F+RILPGDRV++EVSRYDST+GRI+YRLRN  KDS
Subjt:  EQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRNSPKDS

Arabidopsis top hitse value%identityAlignment
AT4G11175.1 Nucleic acid-binding, OB-fold-like protein3.3e-2150Show/hide
Query:  LLQLHLRPPSTLLFPAIK--SHLSVVSIPSPTSQFLHNPSSGPARFALMAKSPKTDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIRKNFV
        LL    R  + +L P I   +  SVV+I         +   G A  +  AK P+      K   EG V ESLPNGMFRV L+N D ILGYI GKIRKNF+
Subjt:  LLQLHLRPPSTLLFPAIK--SHLSVVSIPSPTSQFLHNPSSGPARFALMAKSPKTDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIRKNFV

Query:  RILPGDRVRVEVSRYDSTKGRIVYRL
        RILPGD+V+VE+S YDSTKGRI++R+
Subjt:  RILPGDRVRVEVSRYDSTKGRIVYRL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAGCTCAAATCTTCTCCAATTCCCTCTCCTTCAACTCCACCTCCGGCCACCGTCCACTCTCCTTTTTCCGGCCATCAAATCGCATCTCTCCGTCGTCTCAATCCC
TTCTCCGACCTCTCAATTCCTCCATAACCCTTCCAGTGGTCCGGCAAGGTTCGCTCTCATGGCCAAGTCTCCAAAAACCGATAGCTCGGAGCAGAAATGGAGCCATGAAG
GCTCGGTCGTCGAGTCTCTTCCCAATGGGATGTTCAGAGTTCTATTGGATAATAAAGACCTCATTCTTGGCTACATATCGGGTAAGATTAGGAAGAATTTTGTGCGTATT
TTGCCTGGTGATAGGGTCAGGGTTGAAGTTAGCCGTTATGATTCTACCAAAGGCCGTATTGTTTATAGACTTCGAAACAGTCCTAAGGATTCATCTTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGAGCTCAAATCTTCTCCAATTCCCTCTCCTTCAACTCCACCTCCGGCCACCGTCCACTCTCCTTTTTCCGGCCATCAAATCGCATCTCTCCGTCGTCTCAATCCC
TTCTCCGACCTCTCAATTCCTCCATAACCCTTCCAGTGGTCCGGCAAGGTTCGCTCTCATGGCCAAGTCTCCAAAAACCGATAGCTCGGAGCAGAAATGGAGCCATGAAG
GCTCGGTCGTCGAGTCTCTTCCCAATGGGATGTTCAGAGTTCTATTGGATAATAAAGACCTCATTCTTGGCTACATATCGGGTAAGATTAGGAAGAATTTTGTGCGTATT
TTGCCTGGTGATAGGGTCAGGGTTGAAGTTAGCCGTTATGATTCTACCAAAGGCCGTATTGTTTATAGACTTCGAAACAGTCCTAAGGATTCATCTTCATGA
Protein sequenceShow/hide protein sequence
MSSSNLLQFPLLQLHLRPPSTLLFPAIKSHLSVVSIPSPTSQFLHNPSSGPARFALMAKSPKTDSSEQKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIRKNFVRI
LPGDRVRVEVSRYDSTKGRIVYRLRNSPKDSSS