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Lag0037980 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0037980
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionheterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic
Genome locationchr2:11282432..11282965
RNA-Seq ExpressionLag0037980
SyntenyLag0037980
Gene Ontology termsGO:0008299 - isoprenoid biosynthetic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR008949 - Isoprenoid synthase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OVA08880.1 Polyprenyl synthetase [Macleaya cordata]4.5e-1452.58Show/hide
Query:  LPTMLLSSSNLHLPRKCPNLISQ---FRCSSPSYSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGKSNRRRVM
        +P    +SS+L+ PRK PN  +Q   FRCSS S S+ S ST S  +QFDLKTYW+ LIA+IN  L+EA+ ++YP + YE+MRYSVLA+G      VM
Subjt:  LPTMLLSSSNLHLPRKCPNLISQ---FRCSSPSYSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGKSNRRRVM

PON33651.1 Polyprenyl synthetase-related [Parasponia andersonii]1.8e-1556.52Show/hide
Query:  TMLLSSSNLHLPRKCPNLISQFRCSSPSYSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGKSNRRRVM
        ++L SSS+L+LP +  N I   RCS+ S SS S+STRS S QFDLKTYW  LIA+I++ LDEA+ V+YP + Y AMRYSVLA+G      VM
Subjt:  TMLLSSSNLHLPRKCPNLISQFRCSSPSYSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGKSNRRRVM

PON40297.1 Polyprenyl synthetase-related [Trema orientale]1.8e-1556.52Show/hide
Query:  TMLLSSSNLHLPRKCPNLISQFRCSSPSYSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGKSNRRRVM
        ++L SSS+L+LP +  N I   RCS+ S SS S+STRS S QFDLKTYW  LIA+I++ LDEA+ V+YP + Y AMRYSVLA+G      VM
Subjt:  TMLLSSSNLHLPRKCPNLISQFRCSSPSYSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGKSNRRRVM

XP_022140742.1 heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic [Momordica charantia]3.7e-2472.16Show/hide
Query:  MALPTMLLSSSNL-HLPRKCPNLISQFRCSSPSYSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGKSNRRRVM
        MALPTMLLSSSNL HL  K PNLI   RCS    SSASVS RS S+ FDLKTYW KLI+QINRSLDEAVSV+YPA+ YEAMRYSVLAEG      +M
Subjt:  MALPTMLLSSSNL-HLPRKCPNLISQFRCSSPSYSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGKSNRRRVM

XP_030483625.1 heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic [Cannabis sativa]7.0e-1555.43Show/hide
Query:  TMLLSSSNLHLPRKCPNLISQFRCSSPSYSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGKSNRRRVM
        ++L SSS L+LP K  N I   RCSSP     S+ST+S S QFDLKTYW  LIA+I++ LDEA+ V+YP + Y AMRYSVLA+G      VM
Subjt:  TMLLSSSNLHLPRKCPNLISQFRCSSPSYSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGKSNRRRVM

TrEMBL top hitse value%identityAlignment
A0A2P5AAU1 Polyprenyl synthetase-related8.9e-1656.52Show/hide
Query:  TMLLSSSNLHLPRKCPNLISQFRCSSPSYSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGKSNRRRVM
        ++L SSS+L+LP +  N I   RCS+ S SS S+STRS S QFDLKTYW  LIA+I++ LDEA+ V+YP + Y AMRYSVLA+G      VM
Subjt:  TMLLSSSNLHLPRKCPNLISQFRCSSPSYSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGKSNRRRVM

A0A2P5AUQ9 Polyprenyl synthetase-related8.9e-1656.52Show/hide
Query:  TMLLSSSNLHLPRKCPNLISQFRCSSPSYSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGKSNRRRVM
        ++L SSS+L+LP +  N I   RCS+ S SS S+STRS S QFDLKTYW  LIA+I++ LDEA+ V+YP + Y AMRYSVLA+G      VM
Subjt:  TMLLSSSNLHLPRKCPNLISQFRCSSPSYSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGKSNRRRVM

A0A6J1CHX6 heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic1.8e-2472.16Show/hide
Query:  MALPTMLLSSSNL-HLPRKCPNLISQFRCSSPSYSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGKSNRRRVM
        MALPTMLLSSSNL HL  K PNLI   RCS    SSASVS RS S+ FDLKTYW KLI+QINRSLDEAVSV+YPA+ YEAMRYSVLAEG      +M
Subjt:  MALPTMLLSSSNL-HLPRKCPNLISQFRCSSPSYSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGKSNRRRVM

A0A7J6DWV3 Uncharacterized protein3.4e-1555.43Show/hide
Query:  TMLLSSSNLHLPRKCPNLISQFRCSSPSYSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGKSNRRRVM
        ++L SSS L+LP K  N I   RCSSP     S+ST+S S QFDLKTYW  LIA+I++ LDEA+ V+YP + Y AMRYSVLA+G      VM
Subjt:  TMLLSSSNLHLPRKCPNLISQFRCSSPSYSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGKSNRRRVM

A0A803NQV3 Uncharacterized protein3.4e-1555.43Show/hide
Query:  TMLLSSSNLHLPRKCPNLISQFRCSSPSYSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGKSNRRRVM
        ++L SSS L+LP K  N I   RCSSP     S+ST+S S QFDLKTYW  LIA+I++ LDEA+ V+YP + Y AMRYSVLA+G      VM
Subjt:  TMLLSSSNLHLPRKCPNLISQFRCSSPSYSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGKSNRRRVM

SwissProt top hitse value%identityAlignment
A0A0U3BRC5 Geranylfarnesyl diphosphate synthase, chloroplastic5.2e-0547.83Show/hide
Query:  SVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGK
        + QFD K Y ++ I  +N++LD A+ VR P + +EAMRYS+L  GK
Subjt:  SVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGK

P34802 Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic4.4e-0434.95Show/hide
Query:  PTMLLSSSNLHLPRKCPNLISQ---FR-----CSSPSYSSASVSTRSISVQ------FDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGK
        P+ +L+ S     R CP  +++   FR      SS S  S+SV T+  +++      FD  +Y +     +N++LD AV +R P + +EAMRYS+LA GK
Subjt:  PTMLLSSSNLHLPRKCPNLISQ---FR-----CSSPSYSSASVSTRSISVQ------FDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGK

Query:  SNR
          R
Subjt:  SNR

Q39108 Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic6.4e-1147.13Show/hide
Query:  SSNLHLPRKCPNLISQFRCSSPSYSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGKSNRRRVM
        SS   LP K   L  +    SP+   +S S+   S+ FDL+TYW  LI +IN+ LDEA+ V++PA  YEAMRYSVLA+G      VM
Subjt:  SSNLHLPRKCPNLISQFRCSSPSYSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGKSNRRRVM

Q43133 Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic3.4e-0433.67Show/hide
Query:  PTMLLSSSNLHLPRKC----PNLISQFRCSSPSYSSASV-----STRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGKSNR
        P+ +L+ S    P       P  ++  R  S S SS+ +     + +S S  FD  +Y ++    +N++LD AV +R P + +EAMRYS+LA GK  R
Subjt:  PTMLLSSSNLHLPRKC----PNLISQFRCSSPSYSSASV-----STRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGKSNR

Q9ZU77 Geranylgeranyl pyrophosphate synthase 7, chloroplastic9.9e-0445.65Show/hide
Query:  FDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGKSNR
        FD  +Y +     +N +LD AVS+R P + +EA+RYS+LA GK  R
Subjt:  FDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGKSNR

Arabidopsis top hitse value%identityAlignment
AT2G18620.1 Terpenoid synthases superfamily protein7.0e-0545.65Show/hide
Query:  FDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGKSNR
        FD  +Y +     +N +LD AVS+R P + +EA+RYS+LA GK  R
Subjt:  FDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGKSNR

AT2G23800.1 geranylgeranyl pyrophosphate synthase 25.9e-0438.18Show/hide
Query:  VSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGKSNR
        VS  + + +FD   Y +     +N++L+EA+ V  P + +EAMRY++LA GK  R
Subjt:  VSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGKSNR

AT3G14550.1 geranylgeranyl pyrophosphate synthase 37.8e-0443.48Show/hide
Query:  FDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGKSNR
        FD K Y ++    +N +LD +V +R P    EA+RYS+LA GK  R
Subjt:  FDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGKSNR

AT4G36810.1 geranylgeranyl pyrophosphate synthase 13.1e-0534.95Show/hide
Query:  PTMLLSSSNLHLPRKCPNLISQ---FR-----CSSPSYSSASVSTRSISVQ------FDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGK
        P+ +L+ S     R CP  +++   FR      SS S  S+SV T+  +++      FD  +Y +     +N++LD AV +R P + +EAMRYS+LA GK
Subjt:  PTMLLSSSNLHLPRKCPNLISQ---FR-----CSSPSYSSASVSTRSISVQ------FDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGK

Query:  SNR
          R
Subjt:  SNR

AT4G38460.1 geranylgeranyl reductase4.5e-1247.13Show/hide
Query:  SSNLHLPRKCPNLISQFRCSSPSYSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGKSNRRRVM
        SS   LP K   L  +    SP+   +S S+   S+ FDL+TYW  LI +IN+ LDEA+ V++PA  YEAMRYSVLA+G      VM
Subjt:  SSNLHLPRKCPNLISQFRCSSPSYSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGKSNRRRVM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCTACCTACAATGTTGCTTTCATCTTCCAATCTTCATCTCCCACGAAAATGCCCCAATCTTATCTCCCAATTTCGTTGTTCTTCTCCTTCTTATTCTTCAGCCTC
TGTTTCTACTCGATCCATATCGGTCCAGTTTGATCTGAAAACGTATTGGGTGAAATTGATCGCCCAGATTAATCGGAGTCTCGATGAAGCCGTTTCGGTTCGGTATCCGG
CGGAGTTCTACGAGGCTATGCGATACTCCGTTTTGGCCGAGGGGAAATCAAATCGCCGGAGAGTTATGGCGGAGGAATTGCGCCGGAGAGTTCTGCGACTCGGATTGTAC
GAGAATAGGGGAAATCAAATCGAAGAACGACTTGACGACGAAATGATAGAAATCAAAATGAAGGTTGAAATCGAAGCTGAAATCGTGAGGGAAATGAAATGGAGAATACA
GAAGAATGAAGAAGACGTGAGATGGAGAAGAAGACCGATGGAGATGACCGGAAAAGTAGAGAAGAAATGGAAGCCAATAGAAAGGGCATTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTCTACCTACAATGTTGCTTTCATCTTCCAATCTTCATCTCCCACGAAAATGCCCCAATCTTATCTCCCAATTTCGTTGTTCTTCTCCTTCTTATTCTTCAGCCTC
TGTTTCTACTCGATCCATATCGGTCCAGTTTGATCTGAAAACGTATTGGGTGAAATTGATCGCCCAGATTAATCGGAGTCTCGATGAAGCCGTTTCGGTTCGGTATCCGG
CGGAGTTCTACGAGGCTATGCGATACTCCGTTTTGGCCGAGGGGAAATCAAATCGCCGGAGAGTTATGGCGGAGGAATTGCGCCGGAGAGTTCTGCGACTCGGATTGTAC
GAGAATAGGGGAAATCAAATCGAAGAACGACTTGACGACGAAATGATAGAAATCAAAATGAAGGTTGAAATCGAAGCTGAAATCGTGAGGGAAATGAAATGGAGAATACA
GAAGAATGAAGAAGACGTGAGATGGAGAAGAAGACCGATGGAGATGACCGGAAAAGTAGAGAAGAAATGGAAGCCAATAGAAAGGGCATTTTAG
Protein sequenceShow/hide protein sequence
MALPTMLLSSSNLHLPRKCPNLISQFRCSSPSYSSASVSTRSISVQFDLKTYWVKLIAQINRSLDEAVSVRYPAEFYEAMRYSVLAEGKSNRRRVMAEELRRRVLRLGLY
ENRGNQIEERLDDEMIEIKMKVEIEAEIVREMKWRIQKNEEDVRWRRRPMEMTGKVEKKWKPIERAF