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Lag0038165 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038165
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr2:13228334..13228783
RNA-Seq ExpressionLag0038165
SyntenyLag0038165
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4279811.1 unnamed protein product [Prunus armeniaca]1.1e-0840.86Show/hide
Query:  TNWNPPPTNVWKLNSDASWCEKTKKRGMGWVVRDSNRSLICIGLQSTLKNWSIKALEAKAMWKGMKFLHAKFGGNLSLEIESDALQLIKCLSG
        T+W   P  V K+N DA+W  +T+  G+GWVVRDS   ++  G +  ++  S  A+EAKA+ + +  L     G   LE+ESD+LQLI+ L G
Subjt:  TNWNPPPTNVWKLNSDASWCEKTKKRGMGWVVRDSNRSLICIGLQSTLKNWSIKALEAKAMWKGMKFLHAKFGGNLSLEIESDALQLIKCLSG

CAB4303875.1 unnamed protein product [Prunus armeniaca]2.8e-0939.78Show/hide
Query:  TNWNPPPTNVWKLNSDASWCEKTKKRGMGWVVRDSNRSLICIGLQSTLKNWSIKALEAKAMWKGMKFLHAKFGGNLSLEIESDALQLIKCLSG
        T+W  PP+ V+K+N DA+W  +T    +GW VRDS   ++ +G +  L+  S  A+EA+A+ + +  L    GG   LE+ESD+LQ+I+ L G
Subjt:  TNWNPPPTNVWKLNSDASWCEKTKKRGMGWVVRDSNRSLICIGLQSTLKNWSIKALEAKAMWKGMKFLHAKFGGNLSLEIESDALQLIKCLSG

XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]3.1e-0827.1Show/hide
Query:  WQIWNFINQTHSNKPHTKESQ--------IRNQIDRSNLELRGKKEKNLNSYSALKMEN-HSSPTNWNPPPTNVWKLNSDASWCEKTKKRGMGWVVRDSN
        WQIW   N++        E Q        I + ID+     + ++ +  + Y     EN +     W+ PPTN WKLN+DASW E+ +  G+GW++ D  
Subjt:  WQIWNFINQTHSNKPHTKESQ--------IRNQIDRSNLELRGKKEKNLNSYSALKMEN-HSSPTNWNPPPTNVWKLNSDASWCEKTKKRGMGWVVRDSN

Query:  RSLICIGLQSTLKNWSIKALEAKAMWKGMKFLHAKFGGNLSLEIESDALQLIKCL
          ++  G     +   I ALE   + +G++F++ +      + +ESD++++I+ +
Subjt:  RSLICIGLQSTLKNWSIKALEAKAMWKGMKFLHAKFGGNLSLEIESDALQLIKCL

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]3.1e-0827.89Show/hide
Query:  WQIWNFINQTHSNKPHTKESQIRNQIDRSNLELRGKKEKNLNSYSALKMENHSSPTNWNPPPTNVWKLNSDASWCEKTKKRGMGWVVRDSNRSLICIGLQ
        W IWN  N       H+  S +  Q+ +   E   + E +L    ++  +  ++   W PPP ++W LN+DASW + T + G+GW++R  +  ++  G +
Subjt:  WQIWNFINQTHSNKPHTKESQIRNQIDRSNLELRGKKEKNLNSYSALKMENHSSPTNWNPPPTNVWKLNSDASWCEKTKKRGMGWVVRDSNRSLICIGLQ

Query:  STLKNWSIKALEAKAMWKGMKFLHAKFGGNLSLEIESDALQLIKCLS
              ++K LEA A+ +G++ L    G    L IE+D+ ++   L+
Subjt:  STLKNWSIKALEAKAMWKGMKFLHAKFGGNLSLEIESDALQLIKCLS

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]9.1e-0828.48Show/hide
Query:  WQIWNFINQTHSNKPHTKESQIRNQIDRSNLELRGKKEKNLNSYSA------LKMENHSSPTNWNPPPTNVWKLNSDASWCEKTKKRGMGWVVRDSNRSL
        WQIW   N++     H++   I+  IDR  +   G ++ NL   SA      ++    ++   W PP +N WKLN+DA+W   T   G+GW++RD    +
Subjt:  WQIWNFINQTHSNKPHTKESQIRNQIDRSNLELRGKKEKNLNSYSA------LKMENHSSPTNWNPPPTNVWKLNSDASWCEKTKKRGMGWVVRDSNRSL

Query:  ICIGLQSTLKNWSIKALEAKAMWKGMKFLHAKFGGNLSLE------IESDALQLIKCL
        I    +      +I  LE  A+ +G++ +  +    +  E      +ESD+L+ I  L
Subjt:  ICIGLQSTLKNWSIKALEAKAMWKGMKFLHAKFGGNLSLE------IESDALQLIKCL

TrEMBL top hitse value%identityAlignment
A0A6J1CQG0 uncharacterized protein LOC1110132161.5e-0827.1Show/hide
Query:  WQIWNFINQTHSNKPHTKESQ--------IRNQIDRSNLELRGKKEKNLNSYSALKMEN-HSSPTNWNPPPTNVWKLNSDASWCEKTKKRGMGWVVRDSN
        WQIW   N++        E Q        I + ID+     + ++ +  + Y     EN +     W+ PPTN WKLN+DASW E+ +  G+GW++ D  
Subjt:  WQIWNFINQTHSNKPHTKESQ--------IRNQIDRSNLELRGKKEKNLNSYSALKMEN-HSSPTNWNPPPTNVWKLNSDASWCEKTKKRGMGWVVRDSN

Query:  RSLICIGLQSTLKNWSIKALEAKAMWKGMKFLHAKFGGNLSLEIESDALQLIKCL
          ++  G     +   I ALE   + +G++F++ +      + +ESD++++I+ +
Subjt:  RSLICIGLQSTLKNWSIKALEAKAMWKGMKFLHAKFGGNLSLEIESDALQLIKCL

A0A6J1DNV9 uncharacterized protein LOC1110224031.5e-0827.89Show/hide
Query:  WQIWNFINQTHSNKPHTKESQIRNQIDRSNLELRGKKEKNLNSYSALKMENHSSPTNWNPPPTNVWKLNSDASWCEKTKKRGMGWVVRDSNRSLICIGLQ
        W IWN  N       H+  S +  Q+ +   E   + E +L    ++  +  ++   W PPP ++W LN+DASW + T + G+GW++R  +  ++  G +
Subjt:  WQIWNFINQTHSNKPHTKESQIRNQIDRSNLELRGKKEKNLNSYSALKMENHSSPTNWNPPPTNVWKLNSDASWCEKTKKRGMGWVVRDSNRSLICIGLQ

Query:  STLKNWSIKALEAKAMWKGMKFLHAKFGGNLSLEIESDALQLIKCLS
              ++K LEA A+ +G++ L    G    L IE+D+ ++   L+
Subjt:  STLKNWSIKALEAKAMWKGMKFLHAKFGGNLSLEIESDALQLIKCLS

A0A6J1DSV1 uncharacterized protein LOC1110236084.4e-0828.48Show/hide
Query:  WQIWNFINQTHSNKPHTKESQIRNQIDRSNLELRGKKEKNLNSYSA------LKMENHSSPTNWNPPPTNVWKLNSDASWCEKTKKRGMGWVVRDSNRSL
        WQIW   N++     H++   I+  IDR  +   G ++ NL   SA      ++    ++   W PP +N WKLN+DA+W   T   G+GW++RD    +
Subjt:  WQIWNFINQTHSNKPHTKESQIRNQIDRSNLELRGKKEKNLNSYSA------LKMENHSSPTNWNPPPTNVWKLNSDASWCEKTKKRGMGWVVRDSNRSL

Query:  ICIGLQSTLKNWSIKALEAKAMWKGMKFLHAKFGGNLSLE------IESDALQLIKCL
        I    +      +I  LE  A+ +G++ +  +    +  E      +ESD+L+ I  L
Subjt:  ICIGLQSTLKNWSIKALEAKAMWKGMKFLHAKFGGNLSLE------IESDALQLIKCL

A0A6J5UV01 Reverse transcriptase domain-containing protein5.2e-0940.86Show/hide
Query:  TNWNPPPTNVWKLNSDASWCEKTKKRGMGWVVRDSNRSLICIGLQSTLKNWSIKALEAKAMWKGMKFLHAKFGGNLSLEIESDALQLIKCLSG
        T+W   P  V K+N DA+W  +T+  G+GWVVRDS   ++  G +  ++  S  A+EAKA+ + +  L     G   LE+ESD+LQLI+ L G
Subjt:  TNWNPPPTNVWKLNSDASWCEKTKKRGMGWVVRDSNRSLICIGLQSTLKNWSIKALEAKAMWKGMKFLHAKFGGNLSLEIESDALQLIKCLSG

A0A6J5WV05 RNase H domain-containing protein1.4e-0939.78Show/hide
Query:  TNWNPPPTNVWKLNSDASWCEKTKKRGMGWVVRDSNRSLICIGLQSTLKNWSIKALEAKAMWKGMKFLHAKFGGNLSLEIESDALQLIKCLSG
        T+W  PP+ V+K+N DA+W  +T    +GW VRDS   ++ +G +  L+  S  A+EA+A+ + +  L    GG   LE+ESD+LQ+I+ L G
Subjt:  TNWNPPPTNVWKLNSDASWCEKTKKRGMGWVVRDSNRSLICIGLQSTLKNWSIKALEAKAMWKGMKFLHAKFGGNLSLEIESDALQLIKCLSG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein4.1e-0627.15Show/hide
Query:  MWQIWNFINQT--HSNKPHTKESQIRNQIDRSNLELRGKKEKNLNSYSALKMENHSSPTNWNPPPTNVWKLNSDASWCEKTKKRGMGWVVRDSNRSLICI
        +W++W   N+      + + +E   R + D     +R + E    S       N SS   W PPP    K N+DA+W    ++ G+GWV+R+    +  +
Subjt:  MWQIWNFINQT--HSNKPHTKESQIRNQIDRSNLELRGKKEKNLNSYSALKMENHSSPTNWNPPPTNVWKLNSDASWCEKTKKRGMGWVVRDSNRSLICI

Query:  GLQSTLKNWSIKALEAKAM-WKGMKFLHAKFGGNLSLEIESDALQLIKCLS
        G ++  K  S+   E +AM W  +    ++F  N  +  ESD+  LI+ L+
Subjt:  GLQSTLKNWSIKALEAKAM-WKGMKFLHAKFGGNLSLEIESDALQLIKCLS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGCAAATTTGGAACTTCATAAACCAAACTCATAGCAACAAACCCCACACAAAAGAAAGCCAGATTCGCAACCAAATAGACAGAAGCAATCTGGAGCTCAGGGGAAA
AAAAGAAAAGAACCTGAATTCCTATAGCGCATTGAAAATGGAGAACCACTCGAGTCCCACCAATTGGAATCCTCCTCCAACAAATGTCTGGAAGCTGAACTCAGACGCGT
CCTGGTGCGAGAAAACGAAGAAGAGAGGTATGGGATGGGTGGTTCGTGACTCCAACAGGTCTCTGATCTGCATTGGCCTGCAAAGTACCTTGAAGAATTGGTCGATTAAA
GCCCTTGAAGCAAAAGCTATGTGGAAAGGGATGAAGTTCTTACATGCAAAGTTTGGTGGCAACTTGTCTTTAGAAATCGAGTCTGATGCGCTTCAATTGATCAAATGTCT
GTCTGGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGCAAATTTGGAACTTCATAAACCAAACTCATAGCAACAAACCCCACACAAAAGAAAGCCAGATTCGCAACCAAATAGACAGAAGCAATCTGGAGCTCAGGGGAAA
AAAAGAAAAGAACCTGAATTCCTATAGCGCATTGAAAATGGAGAACCACTCGAGTCCCACCAATTGGAATCCTCCTCCAACAAATGTCTGGAAGCTGAACTCAGACGCGT
CCTGGTGCGAGAAAACGAAGAAGAGAGGTATGGGATGGGTGGTTCGTGACTCCAACAGGTCTCTGATCTGCATTGGCCTGCAAAGTACCTTGAAGAATTGGTCGATTAAA
GCCCTTGAAGCAAAAGCTATGTGGAAAGGGATGAAGTTCTTACATGCAAAGTTTGGTGGCAACTTGTCTTTAGAAATCGAGTCTGATGCGCTTCAATTGATCAAATGTCT
GTCTGGGTAA
Protein sequenceShow/hide protein sequence
MWQIWNFINQTHSNKPHTKESQIRNQIDRSNLELRGKKEKNLNSYSALKMENHSSPTNWNPPPTNVWKLNSDASWCEKTKKRGMGWVVRDSNRSLICIGLQSTLKNWSIK
ALEAKAMWKGMKFLHAKFGGNLSLEIESDALQLIKCLSG