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Lag0038224 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038224
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr2:13985807..13986256
RNA-Seq ExpressionLag0038224
SyntenyLag0038224
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3463294.1 reverse transcriptase [Gossypium australe]4.5e-0734.23Show/hide
Query:  VNLWNHHVPVNGSCPIRKEKVKTTYHAPFQCSRAREIWEVLDPLMHVSPSCQLNIKDRWLRFVDGQ--MQDLEHICVGAWAIWNDRNSRIHNRPIPNAGN
        VNL    + V+ SC    E+ +TT H   +C    EIW VL    ++  +  +N  ++WL +V  Q  M   +  C   WAIW DRN R+HN+ +     
Subjt:  VNLWNHHVPVNGSCPIRKEKVKTTYHAPFQCSRAREIWEVLDPLMHVSPSCQLNIKDRWLRFVDGQ--MQDLEHICVGAWAIWNDRNSRIHNRPIPNAGN

Query:  RCEWINEYLAE
          ++IN YLA+
Subjt:  RCEWINEYLAE

KAA3481600.1 Zinc finger, CCHC-type [Gossypium australe]9.1e-0834.23Show/hide
Query:  VNLWNHHVPVNGSCPIRKEKVKTTYHAPFQCSRAREIWEVLDPLMHVSPSCQLNIKDRWLRFVDGQ--MQDLEHICVGAWAIWNDRNSRIHNRPIPNAGN
        VNL +  + V+ SCP   E+ +T  H   +C    EIW +L    ++  +   N  ++WL +V  Q  M +    C   WAIW DRNSR+HN+ +     
Subjt:  VNLWNHHVPVNGSCPIRKEKVKTTYHAPFQCSRAREIWEVLDPLMHVSPSCQLNIKDRWLRFVDGQ--MQDLEHICVGAWAIWNDRNSRIHNRPIPNAGN

Query:  RCEWINEYLAE
           +I  YLAE
Subjt:  RCEWINEYLAE

XP_022145060.1 uncharacterized protein LOC111014578 [Momordica charantia]2.5e-1334.62Show/hide
Query:  MVNLWNHHVPVNGSCPIRKEKVKTTYHAPFQCSRAREIWEVLDPLMHVSPSCQLN--IKDRWLRFVDG-QMQDLEHICVGAWAIWNDRNSRIHNRPIPNA
        M NL    +  N +C +  ++++TT HA F+C RA+E+W +L P     P C  N  ++D  L  V+     D + + VG WAIWNDRN+    R IP+A
Subjt:  MVNLWNHHVPVNGSCPIRKEKVKTTYHAPFQCSRAREIWEVLDPLMHVSPSCQLN--IKDRWLRFVDG-QMQDLEHICVGAWAIWNDRNSRIHNRPIPNA

Query:  GNRCEWINEYLAEY--KHANSMGSVHVQSE
          R +WI  Y+ ++  +   S+G   +Q +
Subjt:  GNRCEWINEYLAEY--KHANSMGSVHVQSE

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]3.7e-0928.99Show/hide
Query:  SCPIRKEKVKTTYHAPFQCSRAREIWEVLDP-LMHVSPSCQLNIKDRWLRFVDG-QMQDLEHICVGAWAIWNDRNSRIHNRPIPNAGNRCEWINEYLAEY
        +C I  ++ ++  HA F C RAR+IW  L P L  +S    ++  + W    +  + +DL    +  W IWNDRNS IH + +     +CEW+  +L  +
Subjt:  SCPIRKEKVKTTYHAPFQCSRAREIWEVLDP-LMHVSPSCQLNIKDRWLRFVDG-QMQDLEHICVGAWAIWNDRNSRIHNRPIPNAGNRCEWINEYLAEY

Query:  KHANSMGSVHVQSEKDIVDII-----SKGEELILHTDA
          A  M +   +++ +   ++     S    L L+TDA
Subjt:  KHANSMGSVHVQSEKDIVDII-----SKGEELILHTDA

XP_030502714.1 uncharacterized protein LOC115717884 [Cannabis sativa]4.5e-0729.45Show/hide
Query:  NLWNHHVPVNGSCPIRKEKVKTTYHAPFQCSRAREIWEVLDPLMHVSPSCQLNIKDRWLRFVDGQMQD-LEHICVGAWAIWNDRNSRIHNRPIPNAGNRC
        NL+  H+  +  C   K  ++T +HA   CSR R+ W+    L H      L+I D  L   +   +D +  +    WA+WN RN+ IH+  +  A +  
Subjt:  NLWNHHVPVNGSCPIRKEKVKTTYHAPFQCSRAREIWEVLDPLMHVSPSCQLNIKDRWLRFVDGQMQD-LEHICVGAWAIWNDRNSRIHNRPIPNAGNRC

Query:  EWINEYLAEYKHAN---SMGSVHVQSEKDIVDIISKGEELILHTDA
        +W   Y  +Y  A       SV  Q+   + D +S G  L ++TDA
Subjt:  EWINEYLAEYKHAN---SMGSVHVQSEKDIVDIISKGEELILHTDA

TrEMBL top hitse value%identityAlignment
A0A6J1CTE3 uncharacterized protein LOC1110145781.2e-1334.62Show/hide
Query:  MVNLWNHHVPVNGSCPIRKEKVKTTYHAPFQCSRAREIWEVLDPLMHVSPSCQLN--IKDRWLRFVDG-QMQDLEHICVGAWAIWNDRNSRIHNRPIPNA
        M NL    +  N +C +  ++++TT HA F+C RA+E+W +L P     P C  N  ++D  L  V+     D + + VG WAIWNDRN+    R IP+A
Subjt:  MVNLWNHHVPVNGSCPIRKEKVKTTYHAPFQCSRAREIWEVLDPLMHVSPSCQLN--IKDRWLRFVDG-QMQDLEHICVGAWAIWNDRNSRIHNRPIPNA

Query:  GNRCEWINEYLAEY--KHANSMGSVHVQSE
          R +WI  Y+ ++  +   S+G   +Q +
Subjt:  GNRCEWINEYLAEY--KHANSMGSVHVQSE

A0A6J1DX30 uncharacterized protein LOC1110248741.8e-0928.99Show/hide
Query:  SCPIRKEKVKTTYHAPFQCSRAREIWEVLDP-LMHVSPSCQLNIKDRWLRFVDG-QMQDLEHICVGAWAIWNDRNSRIHNRPIPNAGNRCEWINEYLAEY
        +C I  ++ ++  HA F C RAR+IW  L P L  +S    ++  + W    +  + +DL    +  W IWNDRNS IH + +     +CEW+  +L  +
Subjt:  SCPIRKEKVKTTYHAPFQCSRAREIWEVLDP-LMHVSPSCQLNIKDRWLRFVDG-QMQDLEHICVGAWAIWNDRNSRIHNRPIPNAGNRCEWINEYLAEY

Query:  KHANSMGSVHVQSEKDIVDII-----SKGEELILHTDA
          A  M +   +++ +   ++     S    L L+TDA
Subjt:  KHANSMGSVHVQSEKDIVDII-----SKGEELILHTDA

A0A803PD64 Uncharacterized protein3.4e-0831.82Show/hide
Query:  HHVPVNGSCPIRKEKVKTTYHAPFQCSRAREIWEVLDPLMH-VSPSCQLNIKDRWL-RFVDGQMQDLEHICVGAWAIWNDRNSRIHNRPIPNAGNRCEWI
        +H+    + P      KT  HA   CSRAR++W+ L PL H        ++KD  L  + D    D   +    W+IW  RN ++     PNAG+  +W 
Subjt:  HHVPVNGSCPIRKEKVKTTYHAPFQCSRAREIWEVLDPLMH-VSPSCQLNIKDRWL-RFVDGQMQDLEHICVGAWAIWNDRNSRIHNRPIPNAGNRCEWI

Query:  NEYLAEYKHA
        + +L++YK A
Subjt:  NEYLAEYKHA

A0A803QG04 Uncharacterized protein2.6e-0831.5Show/hide
Query:  NLWNHHVPVNGSCPIRKEKVKTTYHAPFQCSRAREIWEVLDPLMHVSPSCQ-LNIKDRWL-RFVDGQMQDLEHICVGAWAIWNDRNSRIHNRPIPNAGNR
        NL    V  + SC      ++T  HA   CSR R++W+ L PL H   S +  +IKD  L  + D +  D   +    W+IW  RN ++     P+AGN 
Subjt:  NLWNHHVPVNGSCPIRKEKVKTTYHAPFQCSRAREIWEVLDPLMHVSPSCQ-LNIKDRWL-RFVDGQMQDLEHICVGAWAIWNDRNSRIHNRPIPNAGNR

Query:  CEWINEYLAEYKHANSMGSVHVQSEKD
         +W   YL++Y  A    +  V + +D
Subjt:  CEWINEYLAEYKHANSMGSVHVQSEKD

A0A803QH54 Uncharacterized protein3.4e-0832.46Show/hide
Query:  NLWNHHVPVNGSCPIRKEKVKTTYHAPFQCSRAREIWEVLDPLMH-VSPSCQLNIKDRWL-RFVDGQMQDLEHICVGAWAIWNDRNSRIHNRPIPNAGNR
        NL+   V  + SC      ++T  HA   CSRAR++W+ L PL H        ++KD  L  + D    D   +    W+IW  RN ++      NAG+ 
Subjt:  NLWNHHVPVNGSCPIRKEKVKTTYHAPFQCSRAREIWEVLDPLMH-VSPSCQLNIKDRWL-RFVDGQMQDLEHICVGAWAIWNDRNSRIHNRPIPNAGNR

Query:  CEWINEYLAEYKHA
         +WI+ +L++YK A
Subjt:  CEWINEYLAEYKHA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAAACCTCTGGAATCACCATGTGCCGGTTAATGGGTCCTGCCCAATCCGTAAAGAGAAAGTGAAGACCACATATCATGCCCCTTTTCAGTGCTCAAGGGCTAGGGA
GATTTGGGAGGTATTAGATCCTTTGATGCATGTGAGCCCCTCGTGTCAATTGAATATCAAAGACCGTTGGTTGAGATTTGTTGATGGACAGATGCAGGACTTAGAACATA
TCTGTGTGGGGGCTTGGGCTATTTGGAATGATAGAAATAGTAGGATTCATAACCGCCCAATCCCTAATGCAGGGAATCGATGTGAGTGGATAAATGAGTACCTGGCAGAG
TATAAGCATGCAAATTCGATGGGTAGTGTACATGTCCAGTCTGAGAAAGATATCGTTGACATCATTTCCAAGGGAGAAGAGCTCATCTTACATACTGATGCAACCTTTAT
GAGACCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTAAACCTCTGGAATCACCATGTGCCGGTTAATGGGTCCTGCCCAATCCGTAAAGAGAAAGTGAAGACCACATATCATGCCCCTTTTCAGTGCTCAAGGGCTAGGGA
GATTTGGGAGGTATTAGATCCTTTGATGCATGTGAGCCCCTCGTGTCAATTGAATATCAAAGACCGTTGGTTGAGATTTGTTGATGGACAGATGCAGGACTTAGAACATA
TCTGTGTGGGGGCTTGGGCTATTTGGAATGATAGAAATAGTAGGATTCATAACCGCCCAATCCCTAATGCAGGGAATCGATGTGAGTGGATAAATGAGTACCTGGCAGAG
TATAAGCATGCAAATTCGATGGGTAGTGTACATGTCCAGTCTGAGAAAGATATCGTTGACATCATTTCCAAGGGAGAAGAGCTCATCTTACATACTGATGCAACCTTTAT
GAGACCTTAG
Protein sequenceShow/hide protein sequence
MVNLWNHHVPVNGSCPIRKEKVKTTYHAPFQCSRAREIWEVLDPLMHVSPSCQLNIKDRWLRFVDGQMQDLEHICVGAWAIWNDRNSRIHNRPIPNAGNRCEWINEYLAE
YKHANSMGSVHVQSEKDIVDIISKGEELILHTDATFMRP