CuGenDBv2

Gene ID	Lag0038285
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	pre-rRNA-processing protein TSR1 homolog
Genome location	chr2:14798010..14800134
RNA-Seq Expression	Lag0038285
Synteny	Lag0038285
Gene Ontology terms	GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0000479 - endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0005730 - nucleolus (cellular component) GO:0030688 - preribosome, small subunit precursor (cellular component) GO:0003924 - GTPase activity (molecular function) GO:0005525 - GTP binding (molecular function) GO:0034511 - U3 snoRNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0039900.1 pre-rRNA-processing protein TSR1-like protein [Cucumis melo var. makuwa]

2.7e-12

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Query:  MDKVANLIAFVASASYYIEGSTSLYIDSFGSECLSILRSLGLLSIAVLIR
        M KVA+LIAFVASASYYIEGSTSLYIDSFGSECLS+LRSLGL S AVLIR
Subjt:  MDKVANLIAFVASASYYIEGSTSLYIDSFGSECLSILRSLGLLSIAVLIR

TYK24600.1 pre-rRNA-processing protein TSR1-like protein [Cucumis melo var. makuwa]

2.7e-12

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Query:  MDKVANLIAFVASASYYIEGSTSLYIDSFGSECLSILRSLGLLSIAVLIR
        M KVA+LIAFVASASYYIEGSTSLYIDSFGSECLS+LRSLGL S AVLIR
Subjt:  MDKVANLIAFVASASYYIEGSTSLYIDSFGSECLSILRSLGLLSIAVLIR

XP_008459984.1 PREDICTED: pre-rRNA-processing protein TSR1 homolog [Cucumis melo]

2.7e-12

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Query:  MDKVANLIAFVASASYYIEGSTSLYIDSFGSECLSILRSLGLLSIAVLIR
        M KVA+LIAFVASASYYIEGSTSLYIDSFGSECLS+LRSLGL S AVLIR
Subjt:  MDKVANLIAFVASASYYIEGSTSLYIDSFGSECLSILRSLGLLSIAVLIR

XP_011656753.1 pre-rRNA-processing protein TSR1 homolog [Cucumis sativus]

2.7e-12

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Query:  MDKVANLIAFVASASYYIEGSTSLYIDSFGSECLSILRSLGLLSIAVLIR
        M KVA+LIAFVASASYYIEGSTSLYIDSFGSECLS+LRSLGL S AVLIR
Subjt:  MDKVANLIAFVASASYYIEGSTSLYIDSFGSECLSILRSLGLLSIAVLIR

XP_022142767.1 uncharacterized protein LOC111012805 [Momordica charantia]

2.9e-14

41.86

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Query:  NLEELIDQVDPPFTEEVMKAEVPQKFKPGESLRDYITRFNKETLQVEGYSERSTLVAITAGLEDKRLLNSIGNSQPRTYADFVSRAHKYMSAEELLKS--
        +LEEL+DQ D PFTEE+M+ +     +  ESL DY+TRFNKE LQVEG ++  +L+A   G+ D+ L  S G   P T+++ +SRA +YMSA E   S  
Subjt:  NLEELIDQVDPPFTEEVMKAEVPQKFKPGESLRDYITRFNKETLQVEGYSERSTLVAITAGLEDKRLLNSIGNSQPRTYADFVSRAHKYMSAEELLKS--

Query:  ----KKSEREYKRSSSFDHDSKKDKRQRT
            K+++++ +RS      S+ +KR R+
Subjt:  ----KKSEREYKRSSSFDHDSKKDKRQRT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KDA2 Uncharacterized protein

1.3e-12

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Query:  MDKVANLIAFVASASYYIEGSTSLYIDSFGSECLSILRSLGLLSIAVLIR
        M KVA+LIAFVASASYYIEGSTSLYIDSFGSECLS+LRSLGL S AVLIR
Subjt:  MDKVANLIAFVASASYYIEGSTSLYIDSFGSECLSILRSLGLLSIAVLIR

A0A1S3CBG5 pre-rRNA-processing protein TSR1 homolog

1.3e-12

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Query:  MDKVANLIAFVASASYYIEGSTSLYIDSFGSECLSILRSLGLLSIAVLIR
        M KVA+LIAFVASASYYIEGSTSLYIDSFGSECLS+LRSLGL S AVLIR
Subjt:  MDKVANLIAFVASASYYIEGSTSLYIDSFGSECLSILRSLGLLSIAVLIR

A0A5A7T9F0 Pre-rRNA-processing protein TSR1-like protein

1.3e-12

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Query:  MDKVANLIAFVASASYYIEGSTSLYIDSFGSECLSILRSLGLLSIAVLIR
        M KVA+LIAFVASASYYIEGSTSLYIDSFGSECLS+LRSLGL S AVLIR
Subjt:  MDKVANLIAFVASASYYIEGSTSLYIDSFGSECLSILRSLGLLSIAVLIR

A0A5D3DMV4 Pre-rRNA-processing protein TSR1-like protein

1.3e-12

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Query:  MDKVANLIAFVASASYYIEGSTSLYIDSFGSECLSILRSLGLLSIAVLIR
        M KVA+LIAFVASASYYIEGSTSLYIDSFGSECLS+LRSLGL S AVLIR
Subjt:  MDKVANLIAFVASASYYIEGSTSLYIDSFGSECLSILRSLGLLSIAVLIR

A0A6J1CNT2 uncharacterized protein LOC111012805

1.4e-14

41.86

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Query:  NLEELIDQVDPPFTEEVMKAEVPQKFKPGESLRDYITRFNKETLQVEGYSERSTLVAITAGLEDKRLLNSIGNSQPRTYADFVSRAHKYMSAEELLKS--
        +LEEL+DQ D PFTEE+M+ +     +  ESL DY+TRFNKE LQVEG ++  +L+A   G+ D+ L  S G   P T+++ +SRA +YMSA E   S  
Subjt:  NLEELIDQVDPPFTEEVMKAEVPQKFKPGESLRDYITRFNKETLQVEGYSERSTLVAITAGLEDKRLLNSIGNSQPRTYADFVSRAHKYMSAEELLKS--

Query:  ----KKSEREYKRSSSFDHDSKKDKRQRT
            K+++++ +RS      S+ +KR R+
Subjt:  ----KKSEREYKRSSSFDHDSKKDKRQRT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G42440.1 FUNCTIONS IN: molecular_function unknown

4.6e-10

39.84

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Query:  MDKVANLIAFVASASYYIEGSTSLYIDSFGSECLSILRSLGLLSIAVLIR-VRQKLKNSGEQNLEELIDQVDPPFTEEVMKAEVPQKFKPGES---LRDY
        M KVA+L+AFVASAS   E ++S +IDSFGS+CLS+ RS+GL S  VLIR +   +K   E   +    Q+   F E+        KF P ++   L  +
Subjt:  MDKVANLIAFVASASYYIEGSTSLYIDSFGSECLSILRSLGLLSIAVLIR-VRQKLKNSGEQNLEELIDQVDPPFTEEVMKAEVPQKFKPGES---LRDY

Query:  ITRFNKETLQVEGY-SERSTLVAITAGL
        +  F  + L V  + S+RS +VA  AG+
Subjt:  ITRFNKETLQVEGY-SERSTLVAITAGL

Sequences

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CDS sequence

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ATGGATAAGGTAGCCAACCTAATTGCTTTCGTGGCCTCTGCGAGCTATTATATTGAAGGAAGCACATCTCTCTACATTGATTCATTTGGAAGCGAATGTCTTTCTATTTT
AAGATCTTTGGGCTTACTAAGTATTGCAGTGCTTATTCGAGTACGTCAGAAGTTAAAGAATTCTGGAGAACAAAACTTGGAAGAACTGATCGACCAAGTCGACCCACCCT
TCACGGAAGAAGTCATGAAAGCCGAGGTGCCCCAGAAGTTCAAGCCTGGTGAGAGCTTGCGTGATTATATAACACGTTTTAACAAGGAAACACTGCAGGTTGAGGGATAT
AGTGAGAGATCAACCCTAGTAGCCATAACAGCCGGACTAGAAGACAAGAGACTTCTTAATTCGATAGGTAATAGCCAACCTCGAACATATGCAGACTTTGTTTCCCGAGC
ACATAAATACATGAGCGCAGAGGAGTTGCTCAAGTCAAAGAAGTCGGAACGAGAATACAAGAGGTCTTCTTCATTCGATCACGACAGTAAGAAGGACAAAAGGCAGCGAA
CAGACGAAGGAGGCCAAGGTTGA

mRNA sequence

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Protein sequence

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MDKVANLIAFVASASYYIEGSTSLYIDSFGSECLSILRSLGLLSIAVLIRVRQKLKNSGEQNLEELIDQVDPPFTEEVMKAEVPQKFKPGESLRDYITRFNKETLQVEGY
SERSTLVAITAGLEDKRLLNSIGNSQPRTYADFVSRAHKYMSAEELLKSKKSEREYKRSSSFDHDSKKDKRQRTDEGGQG

Lag0038285 (gene) of Sponge gourd (AG-4) v1 genome