; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0038287 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038287
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionpre-rRNA-processing protein TSR1 homolog
Genome locationchr2:14812069..14814021
RNA-Seq ExpressionLag0038287
SyntenyLag0038287
Gene Ontology termsGO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000479 - endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0030688 - preribosome, small subunit precursor (cellular component)
GO:0003924 - GTPase activity (molecular function)
GO:0005525 - GTP binding (molecular function)
GO:0034511 - U3 snoRNA binding (molecular function)
InterPro domainsIPR012948 - AARP2CN
IPR030387 - Bms1/Tsr1-type G domain
IPR039761 - Ribosome biogenesis protein Bms1/Tsr1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6592850.1 Pre-rRNA-processing protein TSR1-like protein, partial [Cucurbita argyrosperma subsp. sororia]1.4e-16593.25Show/hide
Query:  MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLS
        MGGSRAQVNKPHKSRFSSKATRQQHKTS KDR+KVTKNNVAKGARAARLQR+KMIREQKR A+LQDKRA SGSK+PPRVIVLFGLSASVDLNPLAEDLLS
Subjt:  MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLS

Query:  LLAPGTLSSTVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIRDLPADIKKRNDYKKI
        LLAPG+ SSTVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFV SASYYIEGSTSLYIDSFGSECLS+LRSLGLPSTAV IRDLP DIKKRNDYKK+
Subjt:  LLAPGTLSSTVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIRDLPADIKKRNDYKKI

Query:  CISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLRKIEVL
        CISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCT GKCTLLLTGYLRARSLSVNQLVHVAGAGDFQL +IEVL
Subjt:  CISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLRKIEVL

Query:  KDPVPLNPRIEQDAMDTHDVEVMNII
        KDPVPLNPR+EQDAMDTHDVEV+ ++
Subjt:  KDPVPLNPRIEQDAMDTHDVEVMNII

XP_023004943.1 pre-rRNA-processing protein TSR1 homolog [Cucurbita maxima]8.1e-16693.56Show/hide
Query:  MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLS
        MGGSR QVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQR+KMIREQKR A+LQDKRA SGSK+PPRVIVLFGLSASVDLNPLAEDLLS
Subjt:  MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLS

Query:  LLAPGTLSSTVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIRDLPADIKKRNDYKKI
        LLAPG+ SSTVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFV SASYYIEGSTSLYIDSFGSECLS+LRSLGLPSTAV IRDLP DIKKRNDYKK+
Subjt:  LLAPGTLSSTVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIRDLPADIKKRNDYKKI

Query:  CISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLRKIEVL
        CISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCT GKCTLLLTGYLRARSLSVNQLVHVAGAGDFQL +IEVL
Subjt:  CISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLRKIEVL

Query:  KDPVPLNPRIEQDAMDTHDVEVMNII
        KDPVPLNPR+EQDAMDTHDVEV+ ++
Subjt:  KDPVPLNPRIEQDAMDTHDVEVMNII

XP_023513549.1 pre-rRNA-processing protein TSR1 homolog [Cucurbita pepo subsp. pepo]2.8e-16693.87Show/hide
Query:  MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLS
        MGGSRAQVNKPHKSRFSSKATRQQHKTS KDRSKVTKNNVAKGARAARLQR+KMIREQKR A+LQDKRA SGSK+PPRVIVLFGLSASVDLNPLAEDLLS
Subjt:  MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLS

Query:  LLAPGTLSSTVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIRDLPADIKKRNDYKKI
        LLAPG+ SSTVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFV SASYYIEGSTSLYIDSFGSECLS+LRSLGLPSTAV IRDLP DIKKRNDYKK+
Subjt:  LLAPGTLSSTVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIRDLPADIKKRNDYKKI

Query:  CISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLRKIEVL
        CISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCT GKCTLLLTGYLRARSLSVNQLVHVAGAGDFQL KIEVL
Subjt:  CISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLRKIEVL

Query:  KDPVPLNPRIEQDAMDTHDVEVMNII
        KDPVPLNPR+EQDAMDTHDVEV+ ++
Subjt:  KDPVPLNPRIEQDAMDTHDVEVMNII

XP_023547507.1 pre-rRNA-processing protein TSR1 homolog [Cucurbita pepo subsp. pepo]2.4e-16593.56Show/hide
Query:  MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLS
        MGG+RAQVNKPHKSRFSSKATRQQHKTSL DRSKVTKNNVAKGARAARLQRSKMIREQKR A+LQDKRALSGSKSPPRVIVL GLSASVDLNPLAEDLLS
Subjt:  MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLS

Query:  LLAPGTLSSTVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIRDLPADIKKRNDYKKI
        LL+PG  SSTVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFV SASYYIEGSTSLYI+SFGSECLSVLRSLGLPSTAVLIRDLP DIKKRNDYKK+
Subjt:  LLAPGTLSSTVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIRDLPADIKKRNDYKKI

Query:  CISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLRKIEVL
        CISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQL KIE+L
Subjt:  CISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLRKIEVL

Query:  KDPVPLNPRIEQDAMDTHDVEVMNII
        KDPVPLNPRIEQD+MDT D EV+ ++
Subjt:  KDPVPLNPRIEQDAMDTHDVEVMNII

XP_038875506.1 pre-rRNA-processing protein TSR1 homolog [Benincasa hispida]2.8e-16694.17Show/hide
Query:  MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLS
        MGG+RAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKR A+LQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLS
Subjt:  MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLS

Query:  LLAPGTLSSTVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIRDLPADIKKRNDYKKI
        LL PG  SSTVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFV SASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIRDLP DIKKRNDYKK+
Subjt:  LLAPGTLSSTVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIRDLPADIKKRNDYKKI

Query:  CISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLRKIEVL
        CISSITSEFPEDCK+YPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCT GKCTLLLTGYLRARSLSVNQLVHVAGAGDFQL KIEVL
Subjt:  CISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLRKIEVL

Query:  KDPVPLNPRIEQDAMDTHDVEVMNII
        KDPVPLNPR+EQDAMDT D EV+ ++
Subjt:  KDPVPLNPRIEQDAMDTHDVEVMNII

TrEMBL top hitse value%identityAlignment
A0A0A0KDA2 Uncharacterized protein4.8e-16492.94Show/hide
Query:  MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLS
        MGG+RAQVNKPHKSRFSSKATRQQHKTSLKD+SKVTKNNVAKGARAARLQRSKMIREQKR A+LQDKR LSGSKSPPRVIVLF LSASVDLNPLAEDLLS
Subjt:  MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLS

Query:  LLAPGTLSSTVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIRDLPADIKKRNDYKKI
        LLAPG  SSTVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIRDLP DIKK+NDYKK+
Subjt:  LLAPGTLSSTVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIRDLPADIKKRNDYKKI

Query:  CISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLRKIEVL
        CISSI SEFPEDCKFY ADTKDELHKFMWLFKEQRLTVPHWR QRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQL KIEVL
Subjt:  CISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLRKIEVL

Query:  KDPVPLNPRIEQDAMDTHDVEVMNII
        KDPVPLNPR EQDAMDT D E++ ++
Subjt:  KDPVPLNPRIEQDAMDTHDVEVMNII

A0A1S3CBG5 pre-rRNA-processing protein TSR1 homolog3.3e-16593.25Show/hide
Query:  MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLS
        MGG+RAQVNKPHKSRFS+KATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKR A+LQDKRALSGSKSPPRVIVLF LSASVDLNPLAEDLLS
Subjt:  MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLS

Query:  LLAPGTLSSTVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIRDLPADIKKRNDYKKI
        LLAPG  SSTVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIRDLP DIKK+NDYKK+
Subjt:  LLAPGTLSSTVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIRDLPADIKKRNDYKKI

Query:  CISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLRKIEVL
        CISSI+SEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWR QRPYLMSQKVDMVADNCTPG+CTLLLTGYLRARSLSVNQLVHVAGAGDFQL KIEVL
Subjt:  CISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLRKIEVL

Query:  KDPVPLNPRIEQDAMDTHDVEVMNII
        KDPVPLNPR EQDAMDT D E++ ++
Subjt:  KDPVPLNPRIEQDAMDTHDVEVMNII

A0A5A7T9F0 Pre-rRNA-processing protein TSR1-like protein3.3e-16593.25Show/hide
Query:  MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLS
        MGG+RAQVNKPHKSRFS+KATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKR A+LQDKRALSGSKSPPRVIVLF LSASVDLNPLAEDLLS
Subjt:  MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLS

Query:  LLAPGTLSSTVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIRDLPADIKKRNDYKKI
        LLAPG  SSTVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIRDLP DIKK+NDYKK+
Subjt:  LLAPGTLSSTVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIRDLPADIKKRNDYKKI

Query:  CISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLRKIEVL
        CISSI+SEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWR QRPYLMSQKVDMVADNCTPG+CTLLLTGYLRARSLSVNQLVHVAGAGDFQL KIEVL
Subjt:  CISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLRKIEVL

Query:  KDPVPLNPRIEQDAMDTHDVEVMNII
        KDPVPLNPR EQDAMDT D E++ ++
Subjt:  KDPVPLNPRIEQDAMDTHDVEVMNII

A0A6J1H8A7 pre-rRNA-processing protein TSR1 homolog7.4e-16593.25Show/hide
Query:  MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLS
        MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVT NNVAKGARAARLQR+KMIREQKR A+LQDKRA SGSK+PPRVIVLFGLSASVDLNPLAEDLLS
Subjt:  MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLS

Query:  LLAPGTLSSTVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIRDLPADIKKRNDYKKI
        LLA G+ SSTVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFV SASYYIEGSTSLYIDSFGSECLS+LRSLGLPSTAV IRDLP DIKKRNDYKK+
Subjt:  LLAPGTLSSTVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIRDLPADIKKRNDYKKI

Query:  CISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLRKIEVL
        CISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCT GKCTLLLTGYLRARSLSVNQLVHVAGAGDFQL +IEVL
Subjt:  CISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLRKIEVL

Query:  KDPVPLNPRIEQDAMDTHDVEVMNII
        KDPVPLNPR EQDAMDTHDVEV+ ++
Subjt:  KDPVPLNPRIEQDAMDTHDVEVMNII

A0A6J1L0W3 pre-rRNA-processing protein TSR1 homolog3.9e-16693.56Show/hide
Query:  MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLS
        MGGSR QVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQR+KMIREQKR A+LQDKRA SGSK+PPRVIVLFGLSASVDLNPLAEDLLS
Subjt:  MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLS

Query:  LLAPGTLSSTVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIRDLPADIKKRNDYKKI
        LLAPG+ SSTVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFV SASYYIEGSTSLYIDSFGSECLS+LRSLGLPSTAV IRDLP DIKKRNDYKK+
Subjt:  LLAPGTLSSTVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIRDLPADIKKRNDYKKI

Query:  CISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLRKIEVL
        CISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCT GKCTLLLTGYLRARSLSVNQLVHVAGAGDFQL +IEVL
Subjt:  CISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLRKIEVL

Query:  KDPVPLNPRIEQDAMDTHDVEVMNII
        KDPVPLNPR+EQDAMDTHDVEV+ ++
Subjt:  KDPVPLNPRIEQDAMDTHDVEVMNII

SwissProt top hitse value%identityAlignment
Q2NL82 Pre-rRNA-processing protein TSR1 homolog4.5e-2632.09Show/hide
Query:  GSRAQVNKPHK-SRFSSKATRQQH---KTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDL
        G   Q NK HK  R   + + Q+    + +LK  SK  +  +   +R  +  R+  +R+QK+ A+L +KR L G   PP  +++  L + + L P A  L
Subjt:  GSRAQVNKPHK-SRFSSKATRQQH---KTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDL

Query:  LSLLAPGT--LSSTVASSEYKLRATVLK-------APYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIRDLPA
        L     GT  L+    +  + L    LK       A  GDL   ++MAKVAD I F+      +EG      DS G  CLS L + GLP+  + ++ +  
Subjt:  LSLLAPGT--LSSTVASSEYKLRATVLK-------APYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIRDLPA

Query:  -DIKKRNDYKKICISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAG
          +KK+ D +K    ++   FP D K    DT+ E    +     Q+     +R++R YL +  VD V         TL ++GY+R ++L+VN+L+H+ G
Subjt:  -DIKKRNDYKKICISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAG

Query:  AGDFQLRKIEVLKDPVPLNPR
         GDFQ+++I+   DP PLNPR
Subjt:  AGDFQLRKIEVLKDPVPLNPR

Q54YA7 Pre-rRNA-processing protein TSR1 homolog3.2e-1625.77Show/hide
Query:  GSRAQVNKPHK-SRFSSKAT---RQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDL
        G   Q NK  K  +  SK     R Q K       +  KN      + A  Q+ + + + K+  LL+ KR     +  PRV+ +  LS S +   + E L
Subjt:  GSRAQVNKPHK-SRFSSKAT---RQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDL

Query:  LSLLA------------PGTLSS--------TVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLP
        L                  TL++        T  S   K+R  +L+         +E  K++D+I FV  A+          ++S      +++++  +P
Subjt:  LSLLA------------PGTLSS--------TVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLP

Query:  STAVLIRDL-PADIKKRNDYKKICISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARS
        +   +I++L    IKKRN+ KK   S     FP + K  P DT DE  + +   +   +    WR  RPY++ +K   +     P    + + G++R  +
Subjt:  STAVLIRDL-PADIKKRNDYKKICISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARS

Query:  LSVNQLVHVAGAGDFQLRKIEVLKDP
        LS  Q++H+   GDFQ+ KIE++ DP
Subjt:  LSVNQLVHVAGAGDFQLRKIEVLKDP

Q5R434 Pre-rRNA-processing protein TSR1 homolog4.1e-2732.09Show/hide
Query:  GSRAQVNKPHK-SRFSSKATRQQH---KTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDL
        G+  Q NK HK  R   + + Q+    + +LK  SK  +  +   +R  +  R+  +R+QK+ A+L +KR L G   PP  +++  L + + L P A  L
Subjt:  GSRAQVNKPHK-SRFSSKATRQQH---KTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDL

Query:  LSLLAPGTL---------SSTVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIRDLPA
        L     GT+         S  +     K R     A  GDL   ++MAKVAD I F+      +EG      DS G  CLS L + GLP+  + ++ +  
Subjt:  LSLLAPGTL---------SSTVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIRDLPA

Query:  -DIKKRNDYKKICISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAG
          +KK+ D +K    ++   FP D K    DT+ E    +     Q+     +R++R YL ++ VD VA        TL ++GY+R ++L+VN+L+H+ G
Subjt:  -DIKKRNDYKKICISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAG

Query:  AGDFQLRKIEVLKDPVPLNPR
         GDFQ+++I+   DP PLNPR
Subjt:  AGDFQLRKIEVLKDPVPLNPR

Q5SWD9 Pre-rRNA-processing protein TSR1 homolog8.5e-2531.97Show/hide
Query:  GSRAQVNKPHK-SRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLSL
        G   Q NK HK  R     + Q+          + K    + +R  +  R+  +R+QKR ++L +KR L     PP  +++  L + + L P A  LL  
Subjt:  GSRAQVNKPHK-SRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLSL

Query:  LAPGT--LSSTVASSEYKLRATVLK-------APYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIRDLPA-DI
           GT  LS   ++  + L    LK       A  GDL + ++MAKVAD I F+      +EG      DS G  CLS L + GLP+  + ++ L     
Subjt:  LAPGT--LSSTVASSEYKLRATVLK-------APYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIRDLPA-DI

Query:  KKRNDYKKICISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGD
        KK+ D +K     +   FPED K    DT+ E    +     Q+     +R++R YL +   D V    +    TL ++GY+R R+L+VN L+H+ G GD
Subjt:  KKRNDYKKICISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGD

Query:  FQLRKIEVLKDPVPLNPRI
        FQ+ +I+   DP PLNPR+
Subjt:  FQLRKIEVLKDPVPLNPRI

Q5XGY1 Pre-rRNA-processing protein TSR1 homolog2.6e-2630.46Show/hide
Query:  GSRAQVNKPHKS-RFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLSL
        G+  Q NKPHKS R   +  + +          + K N     +  R  ++  IR Q++ A+L +KR+L     PP +++   L A      + +DL SL
Subjt:  GSRAQVNKPHKS-RFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLSL

Query:  L-------------APGTLSSTVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIRDLP
        +               G L+  +   + K R   ++A   DL S +++AKVAD + F+       EG      DS+G  CLS L + GLPS  + ++ + 
Subjt:  L-------------APGTLSSTVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIRDLP

Query:  -ADIKKRNDYKKICISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVA
           IKKR D KK     I + F  D K +  DT+ E    +     Q+     +R++R Y+++Q+ D    + +    TL L+GY+R + L+VN+LVH+ 
Subjt:  -ADIKKRNDYKKICISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVA

Query:  GAGDFQLRKIEVLKDPVPLNPRIEQ
        G GDF + +I+   DP PLNPR+ +
Subjt:  GAGDFQLRKIEVLKDPVPLNPRIEQ

Arabidopsis top hitse value%identityAlignment
AT1G42440.1 FUNCTIONS IN: molecular_function unknown3.6e-11967.67Show/hide
Query:  MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTK--NNVAKGARAARLQRSKMIREQKRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDL
        MG SR QVNK HK+RFSSK++R  H+T+L+D  ++ K  +N  KGA+AAR+QR KM+REQKR A+L++KRA  G  S PRVIVLF LSASV+LN L ED+
Subjt:  MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTK--NNVAKGARAARLQRSKMIREQKRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDL

Query:  LSLLA---PGTLSSTVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIRDLPADIKKRN
        L LL+    G  SSTVASSEYKLRATVLKAP+GDL +CMEMAKVADL+AFVASAS   E ++S +IDSFGS+CLSV RS+GLPST VLIRDLP+D+KK+N
Subjt:  LSLLA---PGTLSSTVASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIRDLPADIKKRN

Query:  DYKKICISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLR
        + KK+C S + SEFPEDCKFYPADT+DELHKFMWLFK QRLTVPHWR+QR Y++++K  M+ D+ + GKCTLLL+GYLRAR LSVNQLVHV+G GDFQ  
Subjt:  DYKKICISSITSEFPEDCKFYPADTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLR

Query:  KIEVLKDPVPLNPRIEQDAM---DTHDVEVM
        KIEVLKDP PLN R  Q++M   D+HD EV+
Subjt:  KIEVLKDPVPLNPRIEQDAM---DTHDVEVM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGGGAGTAGGGCTCAAGTCAATAAGCCCCATAAATCACGCTTCTCATCCAAGGCAACGCGACAACAACATAAAACATCTTTAAAAGATAGAAGCAAAGTTACGAA
GAATAATGTTGCTAAGGGAGCTCGGGCTGCTCGTCTTCAGCGCAGTAAAATGATTCGAGAGCAGAAAAGGGTTGCTCTTTTACAGGACAAAAGAGCATTAAGTGGATCAA
AGAGTCCTCCCAGAGTCATAGTTCTTTTTGGGCTTTCCGCCTCAGTAGACCTGAATCCACTTGCTGAGGATCTTTTGTCTCTATTAGCTCCTGGAACTTTGTCATCCACA
GTTGCTTCTTCAGAGTACAAGCTACGGGCAACAGTACTGAAAGCACCCTATGGTGATTTGCAATCATGTATGGAGATGGCTAAGGTAGCCGACCTAATTGCTTTCGTGGC
CTCTGCGAGCTATTATATTGAAGGAAGCACATCTCTCTACATTGATTCATTTGGAAGCGAATGCCTTTCTGTTTTAAGATCTCTGGGCTTACCGAGTACTGCAGTGCTTA
TTCGAGACCTACCCGCTGATATAAAGAAAAGAAACGATTATAAAAAAATTTGTATTTCTAGCATTACTTCTGAATTTCCCGAAGATTGCAAGTTTTATCCTGCAGATACT
AAAGATGAGTTACACAAGTTTATGTGGCTTTTTAAGGAGCAAAGGCTCACTGTTCCTCATTGGAGAAATCAAAGGCCTTATTTGATGTCTCAGAAGGTTGATATGGTAGC
TGATAATTGTACTCCAGGAAAGTGTACCCTTCTTCTCACTGGTTATCTACGTGCTCGAAGTCTCTCTGTGAATCAGCTGGTTCATGTCGCTGGAGCAGGAGATTTCCAGC
TTCGCAAAATTGAAGTTCTCAAGGATCCAGTTCCATTGAATCCAAGAATAGAACAAGATGCCATGGATACTCACGACGTGGAGGTAATGAACATAATCTTTGCACGAGTA
GAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGGGAGTAGGGCTCAAGTCAATAAGCCCCATAAATCACGCTTCTCATCCAAGGCAACGCGACAACAACATAAAACATCTTTAAAAGATAGAAGCAAAGTTACGAA
GAATAATGTTGCTAAGGGAGCTCGGGCTGCTCGTCTTCAGCGCAGTAAAATGATTCGAGAGCAGAAAAGGGTTGCTCTTTTACAGGACAAAAGAGCATTAAGTGGATCAA
AGAGTCCTCCCAGAGTCATAGTTCTTTTTGGGCTTTCCGCCTCAGTAGACCTGAATCCACTTGCTGAGGATCTTTTGTCTCTATTAGCTCCTGGAACTTTGTCATCCACA
GTTGCTTCTTCAGAGTACAAGCTACGGGCAACAGTACTGAAAGCACCCTATGGTGATTTGCAATCATGTATGGAGATGGCTAAGGTAGCCGACCTAATTGCTTTCGTGGC
CTCTGCGAGCTATTATATTGAAGGAAGCACATCTCTCTACATTGATTCATTTGGAAGCGAATGCCTTTCTGTTTTAAGATCTCTGGGCTTACCGAGTACTGCAGTGCTTA
TTCGAGACCTACCCGCTGATATAAAGAAAAGAAACGATTATAAAAAAATTTGTATTTCTAGCATTACTTCTGAATTTCCCGAAGATTGCAAGTTTTATCCTGCAGATACT
AAAGATGAGTTACACAAGTTTATGTGGCTTTTTAAGGAGCAAAGGCTCACTGTTCCTCATTGGAGAAATCAAAGGCCTTATTTGATGTCTCAGAAGGTTGATATGGTAGC
TGATAATTGTACTCCAGGAAAGTGTACCCTTCTTCTCACTGGTTATCTACGTGCTCGAAGTCTCTCTGTGAATCAGCTGGTTCATGTCGCTGGAGCAGGAGATTTCCAGC
TTCGCAAAATTGAAGTTCTCAAGGATCCAGTTCCATTGAATCCAAGAATAGAACAAGATGCCATGGATACTCACGACGTGGAGGTAATGAACATAATCTTTGCACGAGTA
GAGTGA
Protein sequenceShow/hide protein sequence
MGGSRAQVNKPHKSRFSSKATRQQHKTSLKDRSKVTKNNVAKGARAARLQRSKMIREQKRVALLQDKRALSGSKSPPRVIVLFGLSASVDLNPLAEDLLSLLAPGTLSST
VASSEYKLRATVLKAPYGDLQSCMEMAKVADLIAFVASASYYIEGSTSLYIDSFGSECLSVLRSLGLPSTAVLIRDLPADIKKRNDYKKICISSITSEFPEDCKFYPADT
KDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNCTPGKCTLLLTGYLRARSLSVNQLVHVAGAGDFQLRKIEVLKDPVPLNPRIEQDAMDTHDVEVMNIIFARV
E