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Lag0038290 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038290
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr2:14834472..14835359
RNA-Seq ExpressionLag0038290
SyntenyLag0038290
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5443558.1 hypothetical protein F2P56_036105, partial [Juglans regia]2.8e-3044.3Show/hide
Query:  VCTNLCMLKNPHVVFLSETKLQQREMDFVHHQLCFQNCFTVNSVGRRGGLALLWDSSVGFSLLSFSTHHINGWI-DWNGLAWQLTGFYGFPDRDAHHLSW
        V  +L   ++P +VFL ETKL+ R M+    +L   +CFTV+ VGR GGL+LLW   +   + SFS HHI+  I D +G  W+ TG YG P+    +L+W
Subjt:  VCTNLCMLKNPHVVFLSETKLQQREMDFVHHQLCFQNCFTVNSVGRRGGLALLWDSSVGFSLLSFSTHHINGWI-DWNGLAWQLTGFYGFPDRDAHHLSW

Query:  SLLRQLHGDPNTPWLVSGDFNAILNHSQKDGGRLTFEGEIDAFQQVLDECSLMDLGMQ
        +LLR+L+   + PWLV GDFN +L+ ++K GGR   E +++AF+ V+ +CSL DLG +
Subjt:  SLLRQLHGDPNTPWLVSGDFNAILNHSQKDGGRLTFEGEIDAFQQVLDECSLMDLGMQ

OMO50714.1 Endonuclease/exonuclease/phosphatase [Corchorus capsularis]8.7e-3244.08Show/hide
Query:  NLCMLKNPHVVFLSETKLQQREMDFVHHQLCFQNCFTVNSVGRRGGLALLWDSSVGFSLLSFSTHHINGWIDWNGL-AWQLTGFYGFPDRDAHHLSWSLL
        NL +   P  +FLSETK ++ EMD++ ++L + NCFTV  VGR G LALLW + +   +LS+S  HI+  ID N L  W+ TGFYG P  +    SW+LL
Subjt:  NLCMLKNPHVVFLSETKLQQREMDFVHHQLCFQNCFTVNSVGRRGGLALLWDSSVGFSLLSFSTHHINGWIDWNGL-AWQLTGFYGFPDRDAHHLSWSLL

Query:  RQLHGDPNTPWLVSGDFNAILNHSQKDGGRLTFEGEIDAFQQVLDECSLMDL
        R LH   + PWL +GDFN I+++ +K GG    E ++  F+ ++++C L DL
Subjt:  RQLHGDPNTPWLVSGDFNAILNHSQKDGGRLTFEGEIDAFQQVLDECSLMDL

OMO59710.1 reverse transcriptase [Corchorus capsularis]3.0e-3245.18Show/hide
Query:  GHLWHSDVCTNLCMLKNPHVVFLSETKLQQREMDFVHHQLCFQNCFTVNSVGRRGGLALLWDSSVGFSLLSFSTHHINGWIDWNG--LAWQLTGFYGFPD
        G+ W       L   + P+VVFL ETKL   ++D +  +     CF V++ GR GGLA+ WD SV   L+SFS HHI+ W+D N     W+LTGFYG  D
Subjt:  GHLWHSDVCTNLCMLKNPHVVFLSETKLQQREMDFVHHQLCFQNCFTVNSVGRRGGLALLWDSSVGFSLLSFSTHHINGWIDWNG--LAWQLTGFYGFPD

Query:  RDAHHLSWSLLRQ--LHGDPNTPWLVSGDFNAILNHSQKDGGRLTFEGEIDAFQQVLDECSLMDLG
            HLSW LLRQ  LH + N  W   GDFN +L  ++KDGGR   E ++ AF++ LD+C L D+G
Subjt:  RDAHHLSWSLLRQ--LHGDPNTPWLVSGDFNAILNHSQKDGGRLTFEGEIDAFQQVLDECSLMDLG

XP_018812547.1 uncharacterized protein LOC108984903 [Juglans regia]1.4e-2942.58Show/hide
Query:  NLCMLKNPHVVFLSETKLQQREMDFVHHQLCFQNCFTVNSVGRRGGLALLWDSSVGFSLLSFSTHHINGWIDWNGLA---WQLTGFYGFPDRDAHHLSWS
        +L   + P V+FL ET+L  REM+   ++L FQNC  ++S GR+GG+ALLWD+ +  S++++S++H++  I  + L    W LT  YGFP+    H SW+
Subjt:  NLCMLKNPHVVFLSETKLQQREMDFVHHQLCFQNCFTVNSVGRRGGLALLWDSSVGFSLLSFSTHHINGWIDWNGLA---WQLTGFYGFPDRDAHHLSWS

Query:  LLRQLHGDPNTPWLVSGDFNAILNHSQKDGGRLTFEGEIDAFQQVLDECSLMDLG
        L++ L  D + PWLV GDFN IL+  +K GG    E ++  F++V+D C L DLG
Subjt:  LLRQLHGDPNTPWLVSGDFNAILNHSQKDGGRLTFEGEIDAFQQVLDECSLMDLG

XP_018816246.1 uncharacterized protein LOC108987722 [Juglans regia]1.1e-2944.59Show/hide
Query:  PHVVFLSETKLQQREMDFVHHQLCFQNCFTVNSVGRRGGLALLWDSSVGFSLLSFSTHHINGWIDWNGLA---WQLTGFYGFPDRDAHHLSWSLLRQLHG
        P V+FL ET+L  RE++   ++L FQNC  ++S GR+GG+ALLWD  +  S++++S++H++  I    L    W LT  YGFP+    H SWSLL+ L  
Subjt:  PHVVFLSETKLQQREMDFVHHQLCFQNCFTVNSVGRRGGLALLWDSSVGFSLLSFSTHHINGWIDWNGLA---WQLTGFYGFPDRDAHHLSWSLLRQLHG

Query:  DPNTPWLVSGDFNAILNHSQKDGGRLTFEGEIDAFQQVLDECSLMDLG
         P+ PWLV GDFN +L+  +K GG    E ++ AF++V+D C L DLG
Subjt:  DPNTPWLVSGDFNAILNHSQKDGGRLTFEGEIDAFQQVLDECSLMDLG

TrEMBL top hitse value%identityAlignment
A0A1R3FXZ5 Endonuclease/exonuclease/phosphatase4.2e-3244.08Show/hide
Query:  NLCMLKNPHVVFLSETKLQQREMDFVHHQLCFQNCFTVNSVGRRGGLALLWDSSVGFSLLSFSTHHINGWIDWNGL-AWQLTGFYGFPDRDAHHLSWSLL
        NL +   P  +FLSETK ++ EMD++ ++L + NCFTV  VGR G LALLW + +   +LS+S  HI+  ID N L  W+ TGFYG P  +    SW+LL
Subjt:  NLCMLKNPHVVFLSETKLQQREMDFVHHQLCFQNCFTVNSVGRRGGLALLWDSSVGFSLLSFSTHHINGWIDWNGL-AWQLTGFYGFPDRDAHHLSWSLL

Query:  RQLHGDPNTPWLVSGDFNAILNHSQKDGGRLTFEGEIDAFQQVLDECSLMDL
        R LH   + PWL +GDFN I+++ +K GG    E ++  F+ ++++C L DL
Subjt:  RQLHGDPNTPWLVSGDFNAILNHSQKDGGRLTFEGEIDAFQQVLDECSLMDL

A0A1R3GNW3 Reverse transcriptase1.5e-3245.18Show/hide
Query:  GHLWHSDVCTNLCMLKNPHVVFLSETKLQQREMDFVHHQLCFQNCFTVNSVGRRGGLALLWDSSVGFSLLSFSTHHINGWIDWNG--LAWQLTGFYGFPD
        G+ W       L   + P+VVFL ETKL   ++D +  +     CF V++ GR GGLA+ WD SV   L+SFS HHI+ W+D N     W+LTGFYG  D
Subjt:  GHLWHSDVCTNLCMLKNPHVVFLSETKLQQREMDFVHHQLCFQNCFTVNSVGRRGGLALLWDSSVGFSLLSFSTHHINGWIDWNG--LAWQLTGFYGFPD

Query:  RDAHHLSWSLLRQ--LHGDPNTPWLVSGDFNAILNHSQKDGGRLTFEGEIDAFQQVLDECSLMDLG
            HLSW LLRQ  LH + N  W   GDFN +L  ++KDGGR   E ++ AF++ LD+C L D+G
Subjt:  RDAHHLSWSLLRQ--LHGDPNTPWLVSGDFNAILNHSQKDGGRLTFEGEIDAFQQVLDECSLMDLG

A0A2N9EFD5 Reverse transcriptase domain-containing protein8.0e-3147.3Show/hide
Query:  KNPHVVFLSETKLQQREMDFVHHQLCFQNCFTVNSVGRRGGLALLWDSSVGFSLLSFSTHHINGWIDWN-GLAWQLTGFYGFPDRDAHHLSWSLLRQLHG
        ++P +VFL ET+L+ R ++F+  +L   NCF V+  G  GGLALLWDS V   + SFS HHI+  +  + G  WQ+TGFYG+P+    HLSWSLLRQLH 
Subjt:  KNPHVVFLSETKLQQREMDFVHHQLCFQNCFTVNSVGRRGGLALLWDSSVGFSLLSFSTHHINGWIDWN-GLAWQLTGFYGFPDRDAHHLSWSLLRQLHG

Query:  DPNTPWLVSGDFNAILNHSQKDGGRLTFEGEIDAFQQVLDECSLMDLG
            PW+V GDFN I++  +K G       ++ AF++VL++C L DLG
Subjt:  DPNTPWLVSGDFNAILNHSQKDGGRLTFEGEIDAFQQVLDECSLMDLG

A0A2N9J5D9 CCHC-type domain-containing protein6.1e-3145.75Show/hide
Query:  NLCMLKNPHVVFLSETKLQQREMDFVHHQLCFQNCFTVNSVGRRGGLALLWDSSVGFSLLSFSTHHINGWID-WNGLAWQLTGFYGFPDRDAHHLSWSLL
        NL   + P +VFL ET+L  R+++F+  +L  + CF V+     GGLALLWD SV   + S+S HHI+ W+D   G +W+ TGFYG PD    H SW LL
Subjt:  NLCMLKNPHVVFLSETKLQQREMDFVHHQLCFQNCFTVNSVGRRGGLALLWDSSVGFSLLSFSTHHINGWID-WNGLAWQLTGFYGFPDRDAHHLSWSLL

Query:  RQLHGDPNTPWLVSGDFNAILNHSQKDGGRLTFEGEIDAFQQVLDECSLMDLG
        R+L G  N  WLV GDFN I +  +K G       ++ AF++VL++CSL DLG
Subjt:  RQLHGDPNTPWLVSGDFNAILNHSQKDGGRLTFEGEIDAFQQVLDECSLMDLG

A0A2N9J6I3 Uncharacterized protein3.6e-3146.41Show/hide
Query:  NLCMLKNPHVVFLSETKLQQREMDFVHHQLCFQNCFTVNSVGRRGGLALLWDSSVGFSLLSFSTHHINGWID-WNGLAWQLTGFYGFPDRDAHHLSWSLL
        NL   + P +VFL ET+L  R+++F+  +L  + CF V+     GGLALLWD SV   + S+S HHI+ W+D   G +W+LTGFYG PD    H SW LL
Subjt:  NLCMLKNPHVVFLSETKLQQREMDFVHHQLCFQNCFTVNSVGRRGGLALLWDSSVGFSLLSFSTHHINGWID-WNGLAWQLTGFYGFPDRDAHHLSWSLL

Query:  RQLHGDPNTPWLVSGDFNAILNHSQKDGGRLTFEGEIDAFQQVLDECSLMDLG
        R+L G  N  WLV GDFN I +  +K G       ++ AF++VL++CSL DLG
Subjt:  RQLHGDPNTPWLVSGDFNAILNHSQKDGGRLTFEGEIDAFQQVLDECSLMDLG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCGAGGTTTGGGGTCACCTCTGGCATTCCGACGTTTGCACAAACTTGTGCATGCTCAAAAACCCCCACGTGGTGTTTTTATCTGAAACGAAGCTCCAACAA
CGTGAAATGGATTTTGTGCATCATCAGTTGTGCTTCCAGAATTGTTTTACGGTTAATAGTGTTGGTCGTAGGGGTGGCCTTGCTTTGTTATGGGATTCCTCAGTG
GGTTTTAGCCTTCTATCTTTTTCCACGCACCATATCAACGGATGGATTGATTGGAATGGTTTGGCTTGGCAACTGACGGGTTTTTACGGGTTTCCAGATCGGGAT
GCGCACCATCTTTCTTGGAGTCTTCTTCGGCAGCTACATGGTGATCCAAATACTCCTTGGCTTGTCAGTGGAGATTTCAATGCTATCTTAAATCACTCTCAAAAG
GATGGTGGTCGACTAACATTTGAGGGAGAGATTGATGCTTTCCAACAAGTACTTGATGAGTGCTCTCTAATGGATCTGGGAATGCAGTATTGCGACATCGTCTCC
TTAACTCTCCTGGCTTCAAATTCTCTTATGAAACCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCGAGGTTTGGGGTCACCTCTGGCATTCCGACGTTTGCACAAACTTGTGCATGCTCAAAAACCCCCACGTGGTGTTTTTATCTGAAACGAAGCTCCAACAA
CGTGAAATGGATTTTGTGCATCATCAGTTGTGCTTCCAGAATTGTTTTACGGTTAATAGTGTTGGTCGTAGGGGTGGCCTTGCTTTGTTATGGGATTCCTCAGTG
GGTTTTAGCCTTCTATCTTTTTCCACGCACCATATCAACGGATGGATTGATTGGAATGGTTTGGCTTGGCAACTGACGGGTTTTTACGGGTTTCCAGATCGGGAT
GCGCACCATCTTTCTTGGAGTCTTCTTCGGCAGCTACATGGTGATCCAAATACTCCTTGGCTTGTCAGTGGAGATTTCAATGCTATCTTAAATCACTCTCAAAAG
GATGGTGGTCGACTAACATTTGAGGGAGAGATTGATGCTTTCCAACAAGTACTTGATGAGTGCTCTCTAATGGATCTGGGAATGCAGTATTGCGACATCGTCTCC
TTAACTCTCCTGGCTTCAAATTCTCTTATGAAACCTTGA
Protein sequenceShow/hide protein sequence
MFEVWGHLWHSDVCTNLCMLKNPHVVFLSETKLQQREMDFVHHQLCFQNCFTVNSVGRRGGLALLWDSSVGFSLLSFSTHHINGWIDWNGLAWQLTGFYGFPDRD
AHHLSWSLLRQLHGDPNTPWLVSGDFNAILNHSQKDGGRLTFEGEIDAFQQVLDECSLMDLGMQYCDIVSLTLLASNSLMKP