; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0038309 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038309
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr2:15066582..15067094
RNA-Seq ExpressionLag0038309
SyntenyLag0038309
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034017.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.8e-1337.04Show/hide
Query:  PLDGKHRLGALLFHLSLRIDSELHEWRNFHISKGGWISIIQRT-PNLPSYCMSLFSMPNSVVGCPRRDMPNSVIKAIEKFNRIFLWKGTKMGNSSHLINW
        PL G  +    L ++  RI  +L  W+  HISKGG +++I+ T  +LP Y +S+F              P+S  K IEK  R FLWKG+     SH+INW
Subjt:  PLDGKHRLGALLFHLSLRIDSELHEWRNFHISKGGWISIIQRT-PNLPSYCMSLFSMPNSVVGCPRRDMPNSVIKAIEKFNRIFLWKGTKMGNSSHLINW

Query:  SKVLIPNYREGLNICNLKQKNRTLLAEGICRCITE
        S V  P   +GL I  L+  N+ LL++ + R  +E
Subjt:  SKVLIPNYREGLNICNLKQKNRTLLAEGICRCITE

KAA0045262.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.4e-1235.97Show/hide
Query:  PLDGKHRLGALLFHLSLRIDSELHEWRNFHISKGGWISIIQRT-PNLPSYCMSLFSMPNSVVGCPRRDMPNSVIKAIEKFNRIFLWKGTKMGNSSHLINW
        PL G  +      ++  +I  +L+ W+   ISKGG +++I+ T  +LP Y +S+F              P+S  K IEK  R FLWKG+     SHLINW
Subjt:  PLDGKHRLGALLFHLSLRIDSELHEWRNFHISKGGWISIIQRT-PNLPSYCMSLFSMPNSVVGCPRRDMPNSVIKAIEKFNRIFLWKGTKMGNSSHLINW

Query:  SKVLIPNYREGLNICNLKQKNRTLLAEGICRCITENCAL
        +KV  P    GL I  L+  N+ LL + + R  +E  AL
Subjt:  SKVLIPNYREGLNICNLKQKNRTLLAEGICRCITENCAL

KAG5608422.1 hypothetical protein H5410_019703 [Solanum commersonii]3.1e-1235.94Show/hide
Query:  LRIDSELHEWRNFHISKGGWISIIQRT-PNLPSYCMSLFSMPNSVVGCPRRDMPNSVIKAIEKFNRIFLWKGTKMGNSSHLINWSKVLIPNYREGLNICN
        ++ + +L  W+  ++S GG + +I     +LP+Y MSLF  PN          P  V+K ++K  R FLWKG K G   +L+NW  VL+   R GL I N
Subjt:  LRIDSELHEWRNFHISKGGWISIIQRT-PNLPSYCMSLFSMPNSVVGCPRRDMPNSVIKAIEKFNRIFLWKGTKMGNSSHLINWSKVLIPNYREGLNICN

Query:  LKQKNRTLLAEGICRCITENCALGSKLL
        L+ +N +LL + + R I E+ AL  +++
Subjt:  LKQKNRTLLAEGICRCITENCALGSKLL

RVW53576.1 LINE-1 reverse transcriptase-like [Vitis vinifera]3.1e-1234.03Show/hide
Query:  PLDGKHRLGALLFHLSLRIDSELHEWRNFHISKGGWISIIQRT-PNLPSYCMSLFSMPNSVVGCPRRDMPNSVIKAIEKFNRIFLWKGTKMGNSSHLINW
        PL  +H+   +   +  R+   L  W+  ++SKGG I++I+ T  ++P Y MS+F MP SVV            K +EK  R FLW G  MG   HL+NW
Subjt:  PLDGKHRLGALLFHLSLRIDSELHEWRNFHISKGGWISIIQRT-PNLPSYCMSLFSMPNSVVGCPRRDMPNSVIKAIEKFNRIFLWKGTKMGNSSHLINW

Query:  SKVLIPNYREGLNICNLKQKNRTLLAEGICRCITENCALGSKLL
          V     + GL I  +   N+ LL + I R   E   L  K++
Subjt:  SKVLIPNYREGLNICNLKQKNRTLLAEGICRCITENCALGSKLL

TYK00493.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.8e-1236.11Show/hide
Query:  PLDGKHRLGALLFHLSLRIDSELHEWRNFHISKGGWISIIQRT-PNLPSYCMSLFSMPNSVVGCPRRDMPNSVIKAIEKFNRIFLWKGTKMGNSSHLINW
        PL G  +      ++  RI  +L  W+  HISKGG +++I+ T  +LP Y +S+F              P+S  K IEK  R FLWKG+     SHLINW
Subjt:  PLDGKHRLGALLFHLSLRIDSELHEWRNFHISKGGWISIIQRT-PNLPSYCMSLFSMPNSVVGCPRRDMPNSVIKAIEKFNRIFLWKGTKMGNSSHLINW

Query:  SKVLIPNYREGLNICNLKQKNRTLLAEGICRCITENCALGSKLL
        S V  P    GL I  L+  N+ LL++ + R  +E  +L  +L+
Subjt:  SKVLIPNYREGLNICNLKQKNRTLLAEGICRCITENCALGSKLL

TrEMBL top hitse value%identityAlignment
A0A2N9E9R3 Reverse transcriptase domain-containing protein1.4e-1332.89Show/hide
Query:  NIWHFPLDGKHRLGALLFHLSLRIDSELHEWRNFHISKGGWISIIQRT-PNLPSYCMSLFSMPNSVVGCPRRDMPNSVIKAIEKFNRIFLWKGTKMGNSS
        N    PL  K +   +   +  +++ +L  W+  ++SKGGW+++I+ T  +LP+Y +SLF +P+SV  C            I+K  R FLW G   G   
Subjt:  NIWHFPLDGKHRLGALLFHLSLRIDSELHEWRNFHISKGGWISIIQRT-PNLPSYCMSLFSMPNSVVGCPRRDMPNSVIKAIEKFNRIFLWKGTKMGNSS

Query:  HLINWSKVLIPNYREGLNICNLKQKNRTLLAEGICRCITENCALGSKLL
        HLINW +V  P    GL   N++  NR LL + + R  TE  A    ++
Subjt:  HLINWSKVLIPNYREGLNICNLKQKNRTLLAEGICRCITENCALGSKLL

A0A2N9IIN3 Methionine aminopeptidase5.2e-1334.53Show/hide
Query:  PLDGKHRLGALLFHLSLRIDSELHEWRNFHISKGGWISIIQRT-PNLPSYCMSLFSMPNSVVGCPRRDMPNSVIKAIEKFNRIFLWKGTKMGNSSHLINW
        PL  K +   +   +  +++ +L  W+  ++SKGG +++I+ T  +LP+Y +SLF +P SVV              I+   R FLW G   G   HL+NW
Subjt:  PLDGKHRLGALLFHLSLRIDSELHEWRNFHISKGGWISIIQRT-PNLPSYCMSLFSMPNSVVGCPRRDMPNSVIKAIEKFNRIFLWKGTKMGNSSHLINW

Query:  SKVLIPNYREGLNICNLKQKNRTLLAEGICRCITENCAL
        S+V  P +  GL ICN++  NR LL + + R  TE  +L
Subjt:  SKVLIPNYREGLNICNLKQKNRTLLAEGICRCITENCAL

A0A2N9J9H3 Reverse transcriptase domain-containing protein4.0e-1333.81Show/hide
Query:  PLDGKHRLGALLFHLSLRIDSELHEWRNFHISKGGWISIIQRT-PNLPSYCMSLFSMPNSVVGCPRRDMPNSVIKAIEKFNRIFLWKGTKMGNSSHLINW
        PL    ++ ++   +  +++  L  W+  ++SKGG +++I+ T  NLP+Y +SLF +P SV             K IEK  R FLW  ++  ++ HL+NW
Subjt:  PLDGKHRLGALLFHLSLRIDSELHEWRNFHISKGGWISIIQRT-PNLPSYCMSLFSMPNSVVGCPRRDMPNSVIKAIEKFNRIFLWKGTKMGNSSHLINW

Query:  SKVLIPNYREGLNICNLKQKNRTLLAEGICRCITENCAL
          +  P    GLNICNL++ N  LL + + R   E  AL
Subjt:  SKVLIPNYREGLNICNLKQKNRTLLAEGICRCITENCAL

A0A5D3BL61 LINE-1 retrotransposable element ORF2 protein8.9e-1336.11Show/hide
Query:  PLDGKHRLGALLFHLSLRIDSELHEWRNFHISKGGWISIIQRT-PNLPSYCMSLFSMPNSVVGCPRRDMPNSVIKAIEKFNRIFLWKGTKMGNSSHLINW
        PL G  +      ++  RI  +L  W+  HISKGG +++I+ T  +LP Y +S+F              P+S  K IEK  R FLWKG+     SHLINW
Subjt:  PLDGKHRLGALLFHLSLRIDSELHEWRNFHISKGGWISIIQRT-PNLPSYCMSLFSMPNSVVGCPRRDMPNSVIKAIEKFNRIFLWKGTKMGNSSHLINW

Query:  SKVLIPNYREGLNICNLKQKNRTLLAEGICRCITENCALGSKLL
        S V  P    GL I  L+  N+ LL++ + R  +E  +L  +L+
Subjt:  SKVLIPNYREGLNICNLKQKNRTLLAEGICRCITENCALGSKLL

A0A5D3BT10 LINE-1 retrotransposable element ORF2 protein2.3e-1337.04Show/hide
Query:  PLDGKHRLGALLFHLSLRIDSELHEWRNFHISKGGWISIIQRT-PNLPSYCMSLFSMPNSVVGCPRRDMPNSVIKAIEKFNRIFLWKGTKMGNSSHLINW
        PL G  +    L ++  RI  +L  W+  HISKGG +++I+ T  +LP Y +S+F              P+S  K IEK  R FLWKG+     SH+INW
Subjt:  PLDGKHRLGALLFHLSLRIDSELHEWRNFHISKGGWISIIQRT-PNLPSYCMSLFSMPNSVVGCPRRDMPNSVIKAIEKFNRIFLWKGTKMGNSSHLINW

Query:  SKVLIPNYREGLNICNLKQKNRTLLAEGICRCITE
        S V  P   +GL I  L+  N+ LL++ + R  +E
Subjt:  SKVLIPNYREGLNICNLKQKNRTLLAEGICRCITE

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657501.4e-0725.98Show/hide
Query:  RIDSELHEWRNFHISKGGWISIIQRT-PNLPSYCMSLFSMPNSVVGCPRRDMPNSVIKAIEKFNRIFLWKGTKMGNSSHLINWSKVLIPNYREGLNICNL
        R+ S +  WR   +S  G +++ +    ++P + MS               +P S++  +++ +R FLW  T      HL+ WSKV  P    GL +   
Subjt:  RIDSELHEWRNFHISKGGWISIIQRT-PNLPSYCMSLFSMPNSVVGCPRRDMPNSVIKAIEKFNRIFLWKGTKMGNSSHLINWSKVLIPNYREGLNICNL

Query:  KQKNRTLLAEGICRCITENCALGSKLL
        K  NR L+++   R + E  +L + +L
Subjt:  KQKNRTLLAEGICRCITENCALGSKLL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAATTTCTTTGGATGTAAGATGGGATCTTGGCCTAACAAATATTTGGCATTTTCCCCTTGATGGAAAGCACAGATTAGGGGCTCTTCTTTTTCACCTATCATTGAG
AATAGATAGTGAGCTTCATGAATGGAGGAACTTCCACATATCCAAAGGTGGTTGGATATCTATTATACAAAGGACACCCAACCTTCCTTCATACTGCATGTCACTTTTTT
CCATGCCTAATTCAGTTGTCGGATGTCCCCGAAGGGACATGCCTAATTCAGTTATCAAAGCCATTGAAAAGTTCAATAGAATCTTTCTATGGAAAGGCACAAAGATGGGG
AACAGCTCACATTTGATTAATTGGAGCAAAGTTCTGATTCCTAATTACAGAGAAGGATTAAACATTTGTAACTTGAAACAAAAGAACCGCACTCTTCTTGCAGAAGGGAT
TTGCAGATGCATTACAGAAAATTGCGCTTTAGGGAGCAAGTTATTGCCTCTGAATATGATTCTACTTCTATAG
mRNA sequenceShow/hide mRNA sequence
ATGCCAATTTCTTTGGATGTAAGATGGGATCTTGGCCTAACAAATATTTGGCATTTTCCCCTTGATGGAAAGCACAGATTAGGGGCTCTTCTTTTTCACCTATCATTGAG
AATAGATAGTGAGCTTCATGAATGGAGGAACTTCCACATATCCAAAGGTGGTTGGATATCTATTATACAAAGGACACCCAACCTTCCTTCATACTGCATGTCACTTTTTT
CCATGCCTAATTCAGTTGTCGGATGTCCCCGAAGGGACATGCCTAATTCAGTTATCAAAGCCATTGAAAAGTTCAATAGAATCTTTCTATGGAAAGGCACAAAGATGGGG
AACAGCTCACATTTGATTAATTGGAGCAAAGTTCTGATTCCTAATTACAGAGAAGGATTAAACATTTGTAACTTGAAACAAAAGAACCGCACTCTTCTTGCAGAAGGGAT
TTGCAGATGCATTACAGAAAATTGCGCTTTAGGGAGCAAGTTATTGCCTCTGAATATGATTCTACTTCTATAG
Protein sequenceShow/hide protein sequence
MPISLDVRWDLGLTNIWHFPLDGKHRLGALLFHLSLRIDSELHEWRNFHISKGGWISIIQRTPNLPSYCMSLFSMPNSVVGCPRRDMPNSVIKAIEKFNRIFLWKGTKMG
NSSHLINWSKVLIPNYREGLNICNLKQKNRTLLAEGICRCITENCALGSKLLPLNMILLL