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Lag0038358 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038358
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr2:15922073..15922573
RNA-Seq ExpressionLag0038358
SyntenyLag0038358
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]1.2e-2145.62Show/hide
Query:  MTSEEASSKIDASSNSYVGPITRSRSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAENLMLDKFVSSSQQPNNTSSPDVMSVMMTDAGTSEERMAEVE
        M S++A+SK  A+S++Y GPITRSRSK       Q   IA  +L+++ ES +  I   EN + + + S+S +    + PDVMSVMM D    E  MAE+E
Subjt:  MTSEEASSKIDASSNSYVGPITRSRSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAENLMLDKFVSSSQQPNNTSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISMLLKMVEEKDYEIASLKSQMESRDAAESSQTPAIK--DKGKTTLQDQ--SQHSASI
        +KI++L+K+V+E+D+EIA+LK QM++R+ AESSQTP +K  DKGK  +Q+    Q S S+
Subjt:  KKISMLLKMVEEKDYEIASLKSQMESRDAAESSQTPAIK--DKGKTTLQDQ--SQHSASI

XP_031737053.1 uncharacterized protein LOC116402138 [Cucumis sativus]1.2e-2145.62Show/hide
Query:  MTSEEASSKIDASSNSYVGPITRSRSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAENLMLDKFVSSSQQPNNTSSPDVMSVMMTDAGTSEERMAEVE
        M S++A+SK  A+S++Y GPITRSRSK       Q   IA  +L+++ ES +  I   EN + + + S+S +    + PDVMSVMM D    E  MAE+E
Subjt:  MTSEEASSKIDASSNSYVGPITRSRSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAENLMLDKFVSSSQQPNNTSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISMLLKMVEEKDYEIASLKSQMESRDAAESSQTPAIK--DKGKTTLQDQ--SQHSASI
        +KI++L+K+V+E+D+EIA+LK QM++R+ AESSQTP +K  DKGK  +Q+    Q S S+
Subjt:  KKISMLLKMVEEKDYEIASLKSQMESRDAAESSQTPAIK--DKGKTTLQDQ--SQHSASI

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]1.2e-2145.62Show/hide
Query:  MTSEEASSKIDASSNSYVGPITRSRSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAENLMLDKFVSSSQQPNNTSSPDVMSVMMTDAGTSEERMAEVE
        M S++A+SK  A+S++Y GPITRSRSK       Q   IA  +L+++ ES +  I   EN + + + S+S +    + PDVMSVMM D    E  MAE+E
Subjt:  MTSEEASSKIDASSNSYVGPITRSRSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAENLMLDKFVSSSQQPNNTSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISMLLKMVEEKDYEIASLKSQMESRDAAESSQTPAIK--DKGKTTLQDQ--SQHSASI
        +KI++L+K+V+E+D+EIA+LK QM++R+ AESSQTP +K  DKGK  +Q+    Q S S+
Subjt:  KKISMLLKMVEEKDYEIASLKSQMESRDAAESSQTPAIK--DKGKTTLQDQ--SQHSASI

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]1.2e-2145.62Show/hide
Query:  MTSEEASSKIDASSNSYVGPITRSRSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAENLMLDKFVSSSQQPNNTSSPDVMSVMMTDAGTSEERMAEVE
        M S++A+SK  A+S++Y GPITRSRSK       Q   IA  +L+++ ES +  I   EN + + + S+S +    + PDVMSVMM D    E  MAE+E
Subjt:  MTSEEASSKIDASSNSYVGPITRSRSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAENLMLDKFVSSSQQPNNTSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISMLLKMVEEKDYEIASLKSQMESRDAAESSQTPAIK--DKGKTTLQDQ--SQHSASI
        +KI++L+K+V+E+D+EIA+LK QM++R+ AESSQTP +K  DKGK  +Q+    Q S S+
Subjt:  KKISMLLKMVEEKDYEIASLKSQMESRDAAESSQTPAIK--DKGKTTLQDQ--SQHSASI

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]1.2e-2145.62Show/hide
Query:  MTSEEASSKIDASSNSYVGPITRSRSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAENLMLDKFVSSSQQPNNTSSPDVMSVMMTDAGTSEERMAEVE
        M S++A+SK  A+S++Y GPITRSRSK       Q   IA  +L+++ ES +  I   EN + + + S+S +    + PDVMSVMM D    E  MAE+E
Subjt:  MTSEEASSKIDASSNSYVGPITRSRSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAENLMLDKFVSSSQQPNNTSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISMLLKMVEEKDYEIASLKSQMESRDAAESSQTPAIK--DKGKTTLQDQ--SQHSASI
        +KI++L+K+V+E+D+EIA+LK QM++R+ AESSQTP +K  DKGK  +Q+    Q S S+
Subjt:  KKISMLLKMVEEKDYEIASLKSQMESRDAAESSQTPAIK--DKGKTTLQDQ--SQHSASI

TrEMBL top hitse value%identityAlignment
A0A5A7TFN2 Ty3-gypsy retrotransposon protein9.6e-2042.41Show/hide
Query:  MTSEEASSKIDASSNSYVGPITRSRSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAENLMLDKFVSSSQQPNNTSSPDVMSVMMTDAGTSEERMAEVE
        M S++A+S    +S++Y GPITRSRSK    E  Q   +A ++L+++ ES +  I   EN + D   S+S +    + PDV SVMM D  T E  M E+E
Subjt:  MTSEEASSKIDASSNSYVGPITRSRSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAENLMLDKFVSSSQQPNNTSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISMLLKMVEEKDYEIASLKSQMESRDAAESSQTPAIK--DKGKTTLQDQSQHSASI
        +KI+ L+K VEE+D+EI + + Q+ +R+ AESSQTP +K  DKGK  LQ+      S+
Subjt:  KKISMLLKMVEEKDYEIASLKSQMESRDAAESSQTPAIK--DKGKTTLQDQSQHSASI

A0A5A7UF60 Ty3-gypsy retrotransposon protein6.2e-1943.04Show/hide
Query:  MTSEEASSKIDASSNSYVGPITRSRSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAENLMLDKFVSSSQQPNNTSSPDVMSVMMTDAGTSEERMAEVE
        M S++ +S    +S++Y GPITRSRSK    E  Q   +   +L+++ ES +  I   +N + D    +S      + PDVMSVMM D  T E  MAE+E
Subjt:  MTSEEASSKIDASSNSYVGPITRSRSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAENLMLDKFVSSSQQPNNTSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISMLLKMVEEKDYEIASLKSQMESRDAAESSQTPAIK--DKGKTTLQDQSQHSASI
        KKI+ L+K VEE+D+EI +L+ QM +R+ AESSQTP +K  DKGK  +Q+      SI
Subjt:  KKISMLLKMVEEKDYEIASLKSQMESRDAAESSQTPAIK--DKGKTTLQDQSQHSASI

A0A5A7VCU1 Ty3-gypsy retrotransposon protein4.3e-2042.41Show/hide
Query:  MTSEEASSKIDASSNSYVGPITRSRSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAENLMLDKFVSSSQQPNNTSSPDVMSVMMTDAGTSEERMAEVE
        M S++A+S+   +S+ Y GPITR+RSK    E  Q   +   +L+++ ES +  I   EN + D   S+S +      PDVMSVMMTD  T+E  MAE+E
Subjt:  MTSEEASSKIDASSNSYVGPITRSRSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAENLMLDKFVSSSQQPNNTSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISMLLKMVEEKDYEIASLKSQMESRDAAESSQTPAIK--DKGKTTLQDQSQHSASI
        +KI+ L+K+VEE+D+EI +L+ QM++R+  ESSQT  +K  DKGK  +Q+      S+
Subjt:  KKISMLLKMVEEKDYEIASLKSQMESRDAAESSQTPAIK--DKGKTTLQDQSQHSASI

A0A5D3BDK1 Ty3-gypsy retrotransposon protein4.3e-2043.67Show/hide
Query:  MTSEEASSKIDASSNSYVGPITRSRSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAENLMLDKFVSSSQQPNNTSSPDVMSVMMTDAGTSEERMAEVE
        M S++A+S    +S++Y GPITR+RSK    E  Q   IA  +L+++ ES +  I   EN + D   S+S +    + PDVMSV+MTD  T+E  MAE+E
Subjt:  MTSEEASSKIDASSNSYVGPITRSRSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAENLMLDKFVSSSQQPNNTSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISMLLKMVEEKDYEIASLKSQMESRDAAESSQTPAIK--DKGKTTLQDQSQHSASI
        +KI+ L+K VEE+D+EI +L+ QM +R  AES+QTP +K  DKGK  +Q+      S+
Subjt:  KKISMLLKMVEEKDYEIASLKSQMESRDAAESSQTPAIK--DKGKTTLQDQSQHSASI

A0A5D3BY54 Ty3-gypsy retrotransposon protein6.0e-2245.57Show/hide
Query:  MTSEEASSKIDASSNSYVGPITRSRSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAENLMLDKFVSSSQQPNNTSSPDVMSVMMTDAGTSEERMAEVE
        M S++A+S    +SN+Y GPITRSRSK    E  Q   +A  +L+++ ES +  I   EN + D   SSS +    + PDVMSVMM D  T E  MAE+E
Subjt:  MTSEEASSKIDASSNSYVGPITRSRSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAENLMLDKFVSSSQQPNNTSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISMLLKMVEEKDYEIASLKSQMESRDAAESSQTPAIK--DKGKTTLQDQSQHSASI
        +KI+ L+K VEE+D+EI +L+ QM +R+ AESSQTP +K  DKGK  +Q+      S+
Subjt:  KKISMLLKMVEEKDYEIASLKSQMESRDAAESSQTPAIK--DKGKTTLQDQSQHSASI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTCCGAAGAAGCTTCTTCAAAGATCGATGCTTCAAGCAACTCCTATGTGGGGCCAATTACTCGTAGTCGCTCCAAGGAAACCCAACACGAAGACAGCCAAACTCC
TGTCATTGCAAACAAGATGCTGAGACGCATGACAGAATCTGCTCAACTTGAAATCGCCGCTGCAGAAAATCTGATGCTTGACAAATTCGTCTCTTCTTCTCAGCAACCAA
ACAACACATCCAGTCCTGATGTGATGTCTGTTATGATGACTGATGCTGGAACTAGTGAAGAACGAATGGCTGAGGTTGAGAAGAAAATTAGCATGTTACTGAAGATGGTT
GAAGAGAAAGACTACGAAATTGCTTCTCTCAAAAGCCAGATGGAGAGTCGGGATGCCGCTGAATCAAGTCAGACCCCTGCCATCAAAGACAAGGGGAAGACCACATTACA
AGATCAGTCACAACACTCTGCTTCTATTGTTCACTGTCTGTACAACAGCTCCAAGATATGA
mRNA sequenceShow/hide mRNA sequence
ATGACTTCCGAAGAAGCTTCTTCAAAGATCGATGCTTCAAGCAACTCCTATGTGGGGCCAATTACTCGTAGTCGCTCCAAGGAAACCCAACACGAAGACAGCCAAACTCC
TGTCATTGCAAACAAGATGCTGAGACGCATGACAGAATCTGCTCAACTTGAAATCGCCGCTGCAGAAAATCTGATGCTTGACAAATTCGTCTCTTCTTCTCAGCAACCAA
ACAACACATCCAGTCCTGATGTGATGTCTGTTATGATGACTGATGCTGGAACTAGTGAAGAACGAATGGCTGAGGTTGAGAAGAAAATTAGCATGTTACTGAAGATGGTT
GAAGAGAAAGACTACGAAATTGCTTCTCTCAAAAGCCAGATGGAGAGTCGGGATGCCGCTGAATCAAGTCAGACCCCTGCCATCAAAGACAAGGGGAAGACCACATTACA
AGATCAGTCACAACACTCTGCTTCTATTGTTCACTGTCTGTACAACAGCTCCAAGATATGA
Protein sequenceShow/hide protein sequence
MTSEEASSKIDASSNSYVGPITRSRSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAENLMLDKFVSSSQQPNNTSSPDVMSVMMTDAGTSEERMAEVEKKISMLLKMV
EEKDYEIASLKSQMESRDAAESSQTPAIKDKGKTTLQDQSQHSASIVHCLYNSSKI