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Lag0038366 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038366
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr2:15988339..15988960
RNA-Seq ExpressionLag0038366
SyntenyLag0038366
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147761.1 uncharacterized protein LOC111016619 [Momordica charantia]2.7e-2848.55Show/hide
Query:  WMDFHGANEATRCRAFALTLIGLARQWFGKIPRRLIGSFRELARAFVTQFLGARSRQKPQINFLTVKHGPQESLKDYINRFNNEVLQVEGYDDGVALTTV
        W D +G  EA RCR F+ TL G  R WF ++ R+ I SF+ELARAFVTQF G  +R +P    LT+K    ESLKDY+ RFN E LQVEG  D V L   
Subjt:  WMDFHGANEATRCRAFALTLIGLARQWFGKIPRRLIGSFRELARAFVTQFLGARSRQKPQINFLTVKHGPQESLKDYINRFNNEVLQVEGYDDGVALTTV

Query:  ILGLQDERLLNSIGESQPRTYGEFMTREQRYINAEELL
        I G++DE+L+ S G+    T+ E  +R Q Y++  EL+
Subjt:  ILGLQDERLLNSIGESQPRTYGEFMTREQRYINAEELL

XP_022150035.1 uncharacterized protein LOC111018307 [Momordica charantia]1.6e-2847.79Show/hide
Query:  WMDFHGANEATRCRAFALTLIGLARQWFGKIPRRLIGSFRELARAFVTQFLGARSRQKPQINFLTVKHGPQESLKDYINRFNNEVLQVEGYDDGVALTTV
        WMD +G +EA +CR F+ TL G AR WF ++ R  I SF+ LA+AFVTQF+G RSR +P    LT+K    ESL DY+ RFN E LQVEG  + V+L   
Subjt:  WMDFHGANEATRCRAFALTLIGLARQWFGKIPRRLIGSFRELARAFVTQFLGARSRQKPQINFLTVKHGPQESLKDYINRFNNEVLQVEGYDDGVALTTV

Query:  ILGLQDERLLNSIGESQPRTYGEFMTREQRYINAEE
        +  ++DE L  S G+  P T+ E ++R Q+Y++A E
Subjt:  ILGLQDERLLNSIGESQPRTYGEFMTREQRYINAEE

XP_022158344.1 uncharacterized protein LOC111024851 [Momordica charantia]2.2e-3050Show/hide
Query:  WMDFHGANEATRCRAFALTLIGLARQWFGKIPRRLIGSFRELARAFVTQFLGARSRQKPQINFLTVKHGPQESLKDYINRFNNEVLQVEGYDDGVALTTV
        W D +   EA RCR F+ TL G AR WF ++ R  I SF+ELA AFVTQF+G R + KP    LT+K    ESLK+Y+ RFN E LQVEG  D VAL   
Subjt:  WMDFHGANEATRCRAFALTLIGLARQWFGKIPRRLIGSFRELARAFVTQFLGARSRQKPQINFLTVKHGPQESLKDYINRFNNEVLQVEGYDDGVALTTV

Query:  ILGLQDERLLNSIGESQPRTYGEFMTREQRYINAEELL
        + G++DERL+ S G+  P T+ E ++R Q+Y++A EL+
Subjt:  ILGLQDERLLNSIGESQPRTYGEFMTREQRYINAEELL

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]2.9e-3050.74Show/hide
Query:  WMDFHGANEATRCRAFALTLIGLARQWFGKIPRRLIGSFRELARAFVTQFLGARSRQKPQINFLTVKHGPQESLKDYINRFNNEVLQVEGYDDGVALTTV
        WMD +G +EA RCR F+ TL G AR WF ++ R  I SF+ LARAFVTQF+G R R +P    LT+K    ESL+DY+ RFN E LQVEG  D V+L   
Subjt:  WMDFHGANEATRCRAFALTLIGLARQWFGKIPRRLIGSFRELARAFVTQFLGARSRQKPQINFLTVKHGPQESLKDYINRFNNEVLQVEGYDDGVALTTV

Query:  ILGLQDERLLNSIGESQPRTYGEFMTREQRYINAEE
        + G++DE L  S G+  P T+ E ++R QRY++A E
Subjt:  ILGLQDERLLNSIGESQPRTYGEFMTREQRYINAEE

XP_024042801.1 uncharacterized protein LOC112099618 [Citrus clementina]5.4e-2948.55Show/hide
Query:  TWMDFHGANEATRCRAFALTLIGLARQWFGKIPRRLIGSFRELARAFVTQFLGARSRQKPQINFLTVKHGPQESLKDYINRFNNEVLQVEGYDDGVALTT
        +WM+  GA+ A  CRAF+LTLI  AR+W+ K+    I SF +L++  V QF+GAR +Q P   FL VK G  ESLKD I RFN EV++VE Y D VALTT
Subjt:  TWMDFHGANEATRCRAFALTLIGLARQWFGKIPRRLIGSFRELARAFVTQFLGARSRQKPQINFLTVKHGPQESLKDYINRFNNEVLQVEGYDDGVALTT

Query:  VILGLQDERLLNSIGESQPRTYGEFMTREQRYINAEEL
        +++GLQ  +   S+ ++  RT+ E ++R Q+Y N +EL
Subjt:  VILGLQDERLLNSIGESQPRTYGEFMTREQRYINAEEL

TrEMBL top hitse value%identityAlignment
A0A6J1D3B7 uncharacterized protein LOC1110166191.3e-2848.55Show/hide
Query:  WMDFHGANEATRCRAFALTLIGLARQWFGKIPRRLIGSFRELARAFVTQFLGARSRQKPQINFLTVKHGPQESLKDYINRFNNEVLQVEGYDDGVALTTV
        W D +G  EA RCR F+ TL G  R WF ++ R+ I SF+ELARAFVTQF G  +R +P    LT+K    ESLKDY+ RFN E LQVEG  D V L   
Subjt:  WMDFHGANEATRCRAFALTLIGLARQWFGKIPRRLIGSFRELARAFVTQFLGARSRQKPQINFLTVKHGPQESLKDYINRFNNEVLQVEGYDDGVALTTV

Query:  ILGLQDERLLNSIGESQPRTYGEFMTREQRYINAEELL
        I G++DE+L+ S G+    T+ E  +R Q Y++  EL+
Subjt:  ILGLQDERLLNSIGESQPRTYGEFMTREQRYINAEELL

A0A6J1D7D2 uncharacterized protein LOC1110183077.6e-2947.79Show/hide
Query:  WMDFHGANEATRCRAFALTLIGLARQWFGKIPRRLIGSFRELARAFVTQFLGARSRQKPQINFLTVKHGPQESLKDYINRFNNEVLQVEGYDDGVALTTV
        WMD +G +EA +CR F+ TL G AR WF ++ R  I SF+ LA+AFVTQF+G RSR +P    LT+K    ESL DY+ RFN E LQVEG  + V+L   
Subjt:  WMDFHGANEATRCRAFALTLIGLARQWFGKIPRRLIGSFRELARAFVTQFLGARSRQKPQINFLTVKHGPQESLKDYINRFNNEVLQVEGYDDGVALTTV

Query:  ILGLQDERLLNSIGESQPRTYGEFMTREQRYINAEE
        +  ++DE L  S G+  P T+ E ++R Q+Y++A E
Subjt:  ILGLQDERLLNSIGESQPRTYGEFMTREQRYINAEE

A0A6J1DWY0 uncharacterized protein LOC1110252931.4e-3050.74Show/hide
Query:  WMDFHGANEATRCRAFALTLIGLARQWFGKIPRRLIGSFRELARAFVTQFLGARSRQKPQINFLTVKHGPQESLKDYINRFNNEVLQVEGYDDGVALTTV
        WMD +G +EA RCR F+ TL G AR WF ++ R  I SF+ LARAFVTQF+G R R +P    LT+K    ESL+DY+ RFN E LQVEG  D V+L   
Subjt:  WMDFHGANEATRCRAFALTLIGLARQWFGKIPRRLIGSFRELARAFVTQFLGARSRQKPQINFLTVKHGPQESLKDYINRFNNEVLQVEGYDDGVALTTV

Query:  ILGLQDERLLNSIGESQPRTYGEFMTREQRYINAEE
        + G++DE L  S G+  P T+ E ++R QRY++A E
Subjt:  ILGLQDERLLNSIGESQPRTYGEFMTREQRYINAEE

A0A6J1DZ49 uncharacterized protein LOC1110248511.1e-3050Show/hide
Query:  WMDFHGANEATRCRAFALTLIGLARQWFGKIPRRLIGSFRELARAFVTQFLGARSRQKPQINFLTVKHGPQESLKDYINRFNNEVLQVEGYDDGVALTTV
        W D +   EA RCR F+ TL G AR WF ++ R  I SF+ELA AFVTQF+G R + KP    LT+K    ESLK+Y+ RFN E LQVEG  D VAL   
Subjt:  WMDFHGANEATRCRAFALTLIGLARQWFGKIPRRLIGSFRELARAFVTQFLGARSRQKPQINFLTVKHGPQESLKDYINRFNNEVLQVEGYDDGVALTTV

Query:  ILGLQDERLLNSIGESQPRTYGEFMTREQRYINAEELL
        + G++DERL+ S G+  P T+ E ++R Q+Y++A EL+
Subjt:  ILGLQDERLLNSIGESQPRTYGEFMTREQRYINAEELL

A0A6J1E1E7 uncharacterized protein LOC1110255482.9e-2847.79Show/hide
Query:  WMDFHGANEATRCRAFALTLIGLARQWFGKIPRRLIGSFRELARAFVTQFLGARSRQKPQINFLTVKHGPQESLKDYINRFNNEVLQVEGYDDGVALTTV
        WMD +G ++A RCR F+ TL G AR WF ++ R  I SF+ LARAF+TQF+G R R +P    LT+K    ESL DY+ RFN E LQ+EG  D V+L   
Subjt:  WMDFHGANEATRCRAFALTLIGLARQWFGKIPRRLIGSFRELARAFVTQFLGARSRQKPQINFLTVKHGPQESLKDYINRFNNEVLQVEGYDDGVALTTV

Query:  ILGLQDERLLNSIGESQPRTYGEFMTREQRYINAEE
        + G++DE L  S  +  P T+ E ++R QRY++A E
Subjt:  ILGLQDERLLNSIGESQPRTYGEFMTREQRYINAEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAAAAGGGGAAGACAGCTACCAGACCTCCCAAAAGAAGGCAGAGAACGAGGACATAGAAGGGTTGATTGGACAGGAGGGGCCAGTCTTCACCGACGAGATAATGG
GAGGGGAGGTGCCGCACAAATTCAGGATACCAAACTTCCCGTAACTTGGATGGACTTTCATGGGGCGAACGAAGCAACGAGGTGCCGAGCCTTTGCACTAACGCTCATAG
GTTTAGCAAGGCAGTGGTTTGGCAAGATCCCGCGAAGGTTAATCGGCTCTTTTAGAGAGCTGGCCCGAGCGTTTGTTACGCAATTCCTAGGAGCCCGTAGCCGACAGAAG
CCTCAAATCAACTTTTTGACAGTAAAGCATGGGCCCCAGGAAAGCCTGAAAGATTATATTAACAGATTCAATAACGAAGTTTTACAGGTGGAAGGATACGATGACGGAGT
TGCCTTGACCACTGTGATTTTAGGCTTACAGGATGAAAGGCTACTCAACTCAATTGGAGAGAGCCAACCACGAACGTACGGGGAATTTATGACCCGAGAACAAAGATACA
TAAATGCAGAGGAGCTGTTGAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTAAAAGGGGAAGACAGCTACCAGACCTCCCAAAAGAAGGCAGAGAACGAGGACATAGAAGGGTTGATTGGACAGGAGGGGCCAGTCTTCACCGACGAGATAATGG
GAGGGGAGGTGCCGCACAAATTCAGGATACCAAACTTCCCGTAACTTGGATGGACTTTCATGGGGCGAACGAAGCAACGAGGTGCCGAGCCTTTGCACTAACGCTCATAG
GTTTAGCAAGGCAGTGGTTTGGCAAGATCCCGCGAAGGTTAATCGGCTCTTTTAGAGAGCTGGCCCGAGCGTTTGTTACGCAATTCCTAGGAGCCCGTAGCCGACAGAAG
CCTCAAATCAACTTTTTGACAGTAAAGCATGGGCCCCAGGAAAGCCTGAAAGATTATATTAACAGATTCAATAACGAAGTTTTACAGGTGGAAGGATACGATGACGGAGT
TGCCTTGACCACTGTGATTTTAGGCTTACAGGATGAAAGGCTACTCAACTCAATTGGAGAGAGCCAACCACGAACGTACGGGGAATTTATGACCCGAGAACAAAGATACA
TAAATGCAGAGGAGCTGTTGAGATAA
Protein sequenceShow/hide protein sequence
MAKRGRQLPDLPKEGRERGHRRVDWTGGASLHRRDNGRGGAAQIQDTKLPVTWMDFHGANEATRCRAFALTLIGLARQWFGKIPRRLIGSFRELARAFVTQFLGARSRQK
PQINFLTVKHGPQESLKDYINRFNNEVLQVEGYDDGVALTTVILGLQDERLLNSIGESQPRTYGEFMTREQRYINAEELLR