; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0038367 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038367
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr2:15988988..15989960
RNA-Seq ExpressionLag0038367
SyntenyLag0038367
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144467.1 uncharacterized protein LOC111014147 [Momordica charantia]5.3e-4645.61Show/hide
Query:  IQDTNLLKRPEKLRSDPDRRNRNKYCMFHRDHDHTTRECIQLRDEIETLIREGYLKEFVGHERGKRPVQTEPGKGGNNPPLEIQKILGGPSGGESGRKRK
        I+D  LLK PE++++   +R++++YC+FHR H H T++C  L++E+E LIR GYLKE+V     + P  T+ G+   +P  EI+ I+GGP   ESGRKRK
Subjt:  IQDTNLLKRPEKLRSDPDRRNRNKYCMFHRDHDHTTRECIQLRDEIETLIREGYLKEFVGHERGKRPVQTEPGKGGNNPPLEIQKILGGPSGGESGRKRK

Query:  AAIRETCS----------------------ADVLSTTAFDAMKLGSDRLRPSLTPLVGFGEEKVSPRGSVELPVTFGEGLQTVTRMINFLVVDCVPSYNA
        A +RE  +                      AD+LS TA+ AM LG   L+ S  PLVGFG E+V P G +E PVTFG G ++VT+M++ LVV+   SYNA
Subjt:  AAIRETCS----------------------ADVLSTTAFDAMKLGSDRLRPSLTPLVGFGEEKVSPRGSVELPVTFGEGLQTVTRMINFLVVDCVPSYNA

Query:  ILGRPALHGLKAVASTYHQVLKFQPEEG
        ILGRP +H L+A+ STYHQ +KF    G
Subjt:  ILGRPALHGLKAVASTYHQVLKFQPEEG

XP_023916366.1 uncharacterized protein LOC112027956 [Quercus suber]2.2e-4437.69Show/hide
Query:  RGKRHQAEGRGRSRSEHSLANGRGR-PEAKEPQGRAEPKARFDRYTPLTASLEQVMAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHRDHDHTTRECIQL
        R +  + E     +SE      +GR  + K+   +A P AR  +YTPL   LEQV+  I+D   LK PEK+R DP++RNR+KYC FHRDH H T EC  L
Subjt:  RGKRHQAEGRGRSRSEHSLANGRGR-PEAKEPQGRAEPKARFDRYTPLTASLEQVMAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHRDHDHTTRECIQL

Query:  RDEIETLIREGYLKEFVGHERGKRPVQTEPGKGGNNPPLEIQKILGGPSGGESGRKRKAAIRET------------------------------------
        + +IE LIR+G LK F+G +     ++ +  +    P  EI+ I+GG S G+S   +KA ++E                                     
Subjt:  RDEIETLIREGYLKEFVGHERGKRPVQTEPGKGGNNPPLEIQKILGGPSGGESGRKRKAAIRET------------------------------------

Query:  ---------------------CSADVLSTTAFDAMKLGSDRLRPSLTPLVGFGEEKVSPRGSVELPVTFGEGLQTVTRMINFLVVDCVPSYNAILGRPAL
                              SAD+L   AF  M++G ++LRP  +PLVGFG  KV P G+V LPV  G   + +T  +NFLVVDC  SYNAI+GRP L
Subjt:  ---------------------CSADVLSTTAFDAMKLGSDRLRPSLTPLVGFGEEKVSPRGSVELPVTFGEGLQTVTRMINFLVVDCVPSYNAILGRPAL

Query:  HGLKAVASTYHQVLKFQPEEG
        +  KAV STYH  +KF  E+G
Subjt:  HGLKAVASTYHQVLKFQPEEG

XP_030924801.1 uncharacterized protein LOC115951796 [Quercus lobata]5.9e-4538.41Show/hide
Query:  EGRGRSRSEHSLANGRGRPE-AKEPQGR-AEPKARFDRYTPLTASLEQVMAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHRDHDHTTRECIQLRDEIET
        E      SE +L   +GR E  KE  GR   P  R   YTPL A L QV   I+D   LK PEK++ DP++RN+NKYC FHRDH H T EC  L+ +IE 
Subjt:  EGRGRSRSEHSLANGRGRPE-AKEPQGR-AEPKARFDRYTPLTASLEQVMAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHRDHDHTTRECIQLRDEIET

Query:  LIREGYLKEFVGHERGKRPVQTEPGKGGNNPPLEIQKILGGPSGGESGRKRKAAIRET------------------------------------------
        LIR+G LK FVG +R    ++ +  +    P  EI+ I+GG   G+S + +K  ++                                            
Subjt:  LIREGYLKEFVGHERGKRPVQTEPGKGGNNPPLEIQKILGGPSGGESGRKRKAAIRET------------------------------------------

Query:  ---------------CSADVLSTTAFDAMKLGSDRLRPSLTPLVGFGEEKVSPRGSVELPVTFGEGLQTVTRMINFLVVDCVPSYNAILGRPALHGLKAV
                        SAD+L   AF  M+LG D+LRP  +PL+GFG  KV P G++ LPV  G   Q +T+ +NFLVVDC  SYNAI+GRP L+  KA+
Subjt:  ---------------CSADVLSTTAFDAMKLGSDRLRPSLTPLVGFGEEKVSPRGSVELPVTFGEGLQTVTRMINFLVVDCVPSYNAILGRPALHGLKAV

Query:  ASTYHQVLKFQPEEG
         STYH  +KF  E G
Subjt:  ASTYHQVLKFQPEEG

XP_030936700.1 uncharacterized protein LOC115961955 [Quercus lobata]6.5e-4438.94Show/hide
Query:  RGKRHQAEGRGRSRSEHSLANGRGRPEAKEPQGR-AEPKARFDRYTPLTASLEQVMAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHRDHDHTTRECIQL
        R K  + +      SE      +GR E K+ + R A P  R  +YTPL   L+QV+  I+D   LK PEK++ DP++RNRNKYC FHRDH H T EC  L
Subjt:  RGKRHQAEGRGRSRSEHSLANGRGRPEAKEPQGR-AEPKARFDRYTPLTASLEQVMAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHRDHDHTTRECIQL

Query:  RDEIETLIREGYLKEFVGHERGKRPVQTEPGKGGNNPPLEIQKILGGPSGGESGRKRKAAI---------------RET---------------------
        + +IE LIR+G L+ F+G +     ++ +  +    P  EI+ I+GG S  +S R RK  +               R+T                     
Subjt:  RDEIETLIREGYLKEFVGHERGKRPVQTEPGKGGNNPPLEIQKILGGPSGGESGRKRKAAI---------------RET---------------------

Query:  ---------------------CSADVLSTTAFDAMKLGSDRLRPSLTPLVGFGEEKVSPRGSVELPVTFGEGLQTVTRMINFLVVDCVPSYNAILGRPAL
                              SAD+L   AF  MKLG DRLRP  +PLVGFG  KV P G V LPV  G   Q VT+ ++FLVVDC  SYNAI+GRP L
Subjt:  ---------------------CSADVLSTTAFDAMKLGSDRLRPSLTPLVGFGEEKVSPRGSVELPVTFGEGLQTVTRMINFLVVDCVPSYNAILGRPAL

Query:  HGLKAVASTYHQVLKFQPEEG
        +  KAV STYH  +KF  + G
Subjt:  HGLKAVASTYHQVLKFQPEEG

XP_030963320.1 uncharacterized protein LOC115984434 [Quercus lobata]1.3e-4745.66Show/hide
Query:  KRHQAEGRGRSRSEHSLANGR---GRPEAKEPQGR-AEPKARFDRYTPLTASLEQVMAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHRDHDHTTRECIQ
        KR + E    + + HS    R   GR E K+ + R A P AR  +YTPL    +QV+  I+D   LK  EK++ DP++ NRNKYC FHRDH H T EC  
Subjt:  KRHQAEGRGRSRSEHSLANGR---GRPEAKEPQGR-AEPKARFDRYTPLTASLEQVMAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHRDHDHTTRECIQ

Query:  LRDEIETLIREGYLKEFVGHERGKRPVQTEPGKGGNNPPLEIQKILGGPSGGESGRKRKAAIRETCSADVLSTTAFDAMKLGSDRLRPSLTPLVGFGEEK
        L+ +IE LIR+G L+ F+G +     ++ +  +    P  EI+ I+GG S  +S   R+  +    SAD+L   AF  MKLG DRLRP  +PLVGFG  K
Subjt:  LRDEIETLIREGYLKEFVGHERGKRPVQTEPGKGGNNPPLEIQKILGGPSGGESGRKRKAAIRETCSADVLSTTAFDAMKLGSDRLRPSLTPLVGFGEEK

Query:  VSPRGSVELPVTFGEGLQTVTRMINFLVVDCVPSYNAILGRPALHGLKAVASTYHQVLKFQPEEG
        V P G+V LPV  G   Q VT+ ++FLVVDC  SYNAI+GRP L+  K V STYH  +KF  E G
Subjt:  VSPRGSVELPVTFGEGLQTVTRMINFLVVDCVPSYNAILGRPALHGLKAVASTYHQVLKFQPEEG

TrEMBL top hitse value%identityAlignment
A0A2N9GNB7 Ribonuclease H4.1e-4438.46Show/hide
Query:  KRHQAEGRGRSRSEHSLANGRGRPEAKEPQGRAEPKARFDRYTPLTASLEQVMAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHRDHDHTTRECIQLRDE
        +R +AE R    ++  +      PE K       P  +F  +TPL   +++++  IQD   L+ P K+RSDP+ R +N YC FHRDH H T +C+ L+++
Subjt:  KRHQAEGRGRSRSEHSLANGRGRPEAKEPQGRAEPKARFDRYTPLTASLEQVMAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHRDHDHTTRECIQLRDE

Query:  IETLIREGYLKEFVGHERGKRPV-------QTEPGKGGNNPPLEIQKILGGP-SGGESGRKRKAAIRET------------------------------C
        +ETLIR+G L+++V      RP        Q EP + G  P  EI+ I+GGP SGG S   RKA  R+                                
Subjt:  IETLIREGYLKEFVGHERGKRPV-------QTEPGKGGNNPPLEIQKILGGP-SGGESGRKRKAAIRET------------------------------C

Query:  SADVLSTTAFDAMKLGSDRLRPSLTPLVGFGEEKVSPRGSVELPVTFGEGLQTVTRMINFLVVDCVPSYNAILGRPALHGLKAVASTYHQVLKFQPEEG
        SAD+L   A+  M++  D+LRP   PLVGF  +KV P G V LP+T G   +TV++ ++FLVV+C  +YNAI+GRP L+ L+AV STYH +LKF  E G
Subjt:  SADVLSTTAFDAMKLGSDRLRPSLTPLVGFGEEKVSPRGSVELPVTFGEGLQTVTRMINFLVVDCVPSYNAILGRPALHGLKAVASTYHQVLKFQPEEG

A0A2N9H2N6 Reverse transcriptase7.0e-4439.78Show/hide
Query:  EAKEPQGRAEPKARFDRYTPLTASLEQVMAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHRDHDHTTRECIQLRDEIETLIREGYLKEFVGHERGKR---
        E  E +    P  +F  +TPL   +++++  IQD   L+ P K+RSDP+ R +N YC FHRDH H T EC+ L++++ETLIR+G L+++V      R   
Subjt:  EAKEPQGRAEPKARFDRYTPLTASLEQVMAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHRDHDHTTRECIQLRDEIETLIREGYLKEFVGHERGKR---

Query:  -PVQTEPGKGGNNPPL-EIQKILGGP-SGGESGRKRKAAIRETC-------------------------------SADVLSTTAFDAMKLGSDRLRPSLT
         P Q E  +     P+ EI+ I+GGP SGG S   RKA  R+                                 SAD+L   A+  M+L  D+L P   
Subjt:  -PVQTEPGKGGNNPPL-EIQKILGGP-SGGESGRKRKAAIRETC-------------------------------SADVLSTTAFDAMKLGSDRLRPSLT

Query:  PLVGFGEEKVSPRGSVELPVTFGEGLQTVTRMINFLVVDCVPSYNAILGRPALHGLKAVASTYHQVLKFQPEEG
        PLVGF  +KV P G V LP+T G   +TV++ ++FLVV+C  +YNAI+GRP L+ L+AV STYH +LKF  E G
Subjt:  PLVGFGEEKVSPRGSVELPVTFGEGLQTVTRMINFLVVDCVPSYNAILGRPALHGLKAVASTYHQVLKFQPEEG

A0A2N9IGX8 Ribonuclease H5.0e-4238.33Show/hide
Query:  KRHQAEGRGRSRSEHSLANGRGRPEAKEPQGRAEPKARFDRYTPLTASLEQVMAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHRDHDHTTRECIQLRDE
        +R +AE R    ++  +      PE K       P  +F  +TPL   +++++  IQD + L  P K+RSDP+ R +N YC FHRDH H   EC+ L+++
Subjt:  KRHQAEGRGRSRSEHSLANGRGRPEAKEPQGRAEPKARFDRYTPLTASLEQVMAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHRDHDHTTRECIQLRDE

Query:  IETLIREGYLKEFVGHERGKRPV-------QTEPGKGGNNPPLEIQKILGGP-SGGESGRKRKAAIRETC------------------------------
        IETLIR+G L+++V      RP        Q E  + G  P  EI+ I+GGP SGG S   RKA  R+                                
Subjt:  IETLIREGYLKEFVGHERGKRPV-------QTEPGKGGNNPPLEIQKILGGP-SGGESGRKRKAAIRETC------------------------------

Query:  -SADVLSTTAFDAMKLGSDRLRPSLTPLVGFGEEKVSPRGSVELPVTFGEGLQTVTRMINFLVVDCVPSYNAILGRPALHGLKAVASTYHQVLKFQPEEG
         SAD+L   A+  M+L  D+LRP   PLVGF  +KV P G V LP+T G   +TV++ ++FLVV+C  +YNAI+GRP  + L+AV STYH +LKF  E G
Subjt:  -SADVLSTTAFDAMKLGSDRLRPSLTPLVGFGEEKVSPRGSVELPVTFGEGLQTVTRMINFLVVDCVPSYNAILGRPALHGLKAVASTYHQVLKFQPEEG

A0A6J1CTS4 uncharacterized protein LOC1110141472.6e-4645.61Show/hide
Query:  IQDTNLLKRPEKLRSDPDRRNRNKYCMFHRDHDHTTRECIQLRDEIETLIREGYLKEFVGHERGKRPVQTEPGKGGNNPPLEIQKILGGPSGGESGRKRK
        I+D  LLK PE++++   +R++++YC+FHR H H T++C  L++E+E LIR GYLKE+V     + P  T+ G+   +P  EI+ I+GGP   ESGRKRK
Subjt:  IQDTNLLKRPEKLRSDPDRRNRNKYCMFHRDHDHTTRECIQLRDEIETLIREGYLKEFVGHERGKRPVQTEPGKGGNNPPLEIQKILGGPSGGESGRKRK

Query:  AAIRETCS----------------------ADVLSTTAFDAMKLGSDRLRPSLTPLVGFGEEKVSPRGSVELPVTFGEGLQTVTRMINFLVVDCVPSYNA
        A +RE  +                      AD+LS TA+ AM LG   L+ S  PLVGFG E+V P G +E PVTFG G ++VT+M++ LVV+   SYNA
Subjt:  AAIRETCS----------------------ADVLSTTAFDAMKLGSDRLRPSLTPLVGFGEEKVSPRGSVELPVTFGEGLQTVTRMINFLVVDCVPSYNA

Query:  ILGRPALHGLKAVASTYHQVLKFQPEEG
        ILGRP +H L+A+ STYHQ +KF    G
Subjt:  ILGRPALHGLKAVASTYHQVLKFQPEEG

A0A6J1DTD9 uncharacterized protein LOC1110241447.8e-4338.24Show/hide
Query:  QAEGRGRSRSEHSLANGRGRPEAKEPQGRAEPKARFDRYTPLTASLEQVMAAIQDT---NLLKRPEKLRSDPDRRNRNKYCMFHRDHDHTTRECIQLRDE
        Q +G+  S+ +   ++ +GR + K     +  +  ++RYTP T  + +++  I++     LLKRP+KLR D ++RN++ YC FHR+H H T  C +L+ +
Subjt:  QAEGRGRSRSEHSLANGRGRPEAKEPQGRAEPKARFDRYTPLTASLEQVMAAIQDT---NLLKRPEKLRSDPDRRNRNKYCMFHRDHDHTTRECIQLRDE

Query:  IETLIREGYLKEFVGHERGKRPVQTEPGKGGNNPPLE------IQKILGGPSGGESGRKRKAAIR-----ETCSADVLSTTAFDAMKLGSDRLRPSLTPL
        IE LI++GY K++VG        + +  K    PP        I  I G PSGG+SG KRK  +R     E  SA++LS T + A+     RL+ SLTPL
Subjt:  IETLIREGYLKEFVGHERGKRPVQTEPGKGGNNPPLE------IQKILGGPSGGESGRKRKAAIR-----ETCSADVLSTTAFDAMKLGSDRLRPSLTPL

Query:  VGFGEEKVSPRGSVELPVTFGEGLQTVTRMINFLVVDCVPSYNAILGRPALHGLKAVASTYHQVLKFQPEEG
        VGF  E V+    ++L +T G+G   V RM+ F+V+D   +YNAI GRP +H L+A+ ST HQV+K+    G
Subjt:  VGFGEEKVSPRGSVELPVTFGEGLQTVTRMINFLVVDCVPSYNAILGRPALHGLKAVASTYHQVLKFQPEEG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGTATCAAACCGACATGGGGAAGACAGAGGAAAGAGGCACCAGGCCGAAGGAAGAGGCCGGAGCCGATCTGAGCACTCCTTGGCCAATGGCCGAGGCCGACCAGA
AGCCAAGGAGCCGCAAGGCCGTGCGGAGCCAAAGGCCAGGTTCGACAGGTATACGCCACTAACAGCTTCGCTTGAACAGGTCATGGCCGCAATACAGGACACGAATCTGT
TGAAACGCCCAGAAAAGTTGAGATCAGATCCCGACAGGAGGAACAGAAACAAATATTGCATGTTCCACAGAGATCACGACCATACGACTCGAGAGTGCATCCAGTTACGA
GATGAGATAGAAACCCTAATCCGAGAGGGTTACTTGAAGGAGTTTGTAGGACATGAAAGGGGGAAGAGGCCGGTGCAGACAGAGCCAGGCAAGGGAGGCAATAACCCACC
GCTCGAGATACAGAAAATTCTGGGAGGACCATCCGGAGGAGAATCAGGCAGAAAGCGAAAGGCTGCAATCCGAGAGACATGTTCCGCTGATGTGCTCTCAACCACTGCGT
TCGACGCCATGAAGCTGGGGAGTGATCGCCTGAGGCCGAGCCTCACGCCGCTAGTAGGTTTCGGCGAGGAAAAAGTAAGTCCGAGAGGAAGCGTTGAACTACCAGTGACG
TTTGGGGAAGGATTGCAGACAGTAACGAGAATGATCAACTTCCTGGTGGTAGACTGTGTCCCATCATATAATGCCATCCTAGGACGACCCGCCTTACATGGACTCAAAGC
TGTGGCCTCAACCTACCACCAGGTTCTGAAATTCCAACCTGAAGAGGGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAGTATCAAACCGACATGGGGAAGACAGAGGAAAGAGGCACCAGGCCGAAGGAAGAGGCCGGAGCCGATCTGAGCACTCCTTGGCCAATGGCCGAGGCCGACCAGA
AGCCAAGGAGCCGCAAGGCCGTGCGGAGCCAAAGGCCAGGTTCGACAGGTATACGCCACTAACAGCTTCGCTTGAACAGGTCATGGCCGCAATACAGGACACGAATCTGT
TGAAACGCCCAGAAAAGTTGAGATCAGATCCCGACAGGAGGAACAGAAACAAATATTGCATGTTCCACAGAGATCACGACCATACGACTCGAGAGTGCATCCAGTTACGA
GATGAGATAGAAACCCTAATCCGAGAGGGTTACTTGAAGGAGTTTGTAGGACATGAAAGGGGGAAGAGGCCGGTGCAGACAGAGCCAGGCAAGGGAGGCAATAACCCACC
GCTCGAGATACAGAAAATTCTGGGAGGACCATCCGGAGGAGAATCAGGCAGAAAGCGAAAGGCTGCAATCCGAGAGACATGTTCCGCTGATGTGCTCTCAACCACTGCGT
TCGACGCCATGAAGCTGGGGAGTGATCGCCTGAGGCCGAGCCTCACGCCGCTAGTAGGTTTCGGCGAGGAAAAAGTAAGTCCGAGAGGAAGCGTTGAACTACCAGTGACG
TTTGGGGAAGGATTGCAGACAGTAACGAGAATGATCAACTTCCTGGTGGTAGACTGTGTCCCATCATATAATGCCATCCTAGGACGACCCGCCTTACATGGACTCAAAGC
TGTGGCCTCAACCTACCACCAGGTTCTGAAATTCCAACCTGAAGAGGGGTAG
Protein sequenceShow/hide protein sequence
MSVSNRHGEDRGKRHQAEGRGRSRSEHSLANGRGRPEAKEPQGRAEPKARFDRYTPLTASLEQVMAAIQDTNLLKRPEKLRSDPDRRNRNKYCMFHRDHDHTTRECIQLR
DEIETLIREGYLKEFVGHERGKRPVQTEPGKGGNNPPLEIQKILGGPSGGESGRKRKAAIRETCSADVLSTTAFDAMKLGSDRLRPSLTPLVGFGEEKVSPRGSVELPVT
FGEGLQTVTRMINFLVVDCVPSYNAILGRPALHGLKAVASTYHQVLKFQPEEG