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Lag0038391 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038391
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr2:16560712..16565539
RNA-Seq ExpressionLag0038391
SyntenyLag0038391
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFY96586.1 hypothetical protein Acr_11g0008920 [Actinidia rufa]9.0e-2261.11Show/hide
Query:  ARLRVVEYKNRIARYYNTKVKMRTFKEGKLVLRKVMQNTRDPNAGALGPAWERPYQVSKVVRPDTFALVDENGRPTPHPWNTEYLKIYYQ
        A LR   YKNRIA+YYN +VK R+F  G LVLR+V  +TRDP+AG LGP WE PY+V KV RP T+ L D NG+   HPWN E+LK YYQ
Subjt:  ARLRVVEYKNRIARYYNTKVKMRTFKEGKLVLRKVMQNTRDPNAGALGPAWERPYQVSKVVRPDTFALVDENGRPTPHPWNTEYLKIYYQ

GFY96826.1 hypothetical protein Acr_11g0011320 [Actinidia rufa]1.5e-2160.44Show/hide
Query:  MARLRVVEYKNRIARYYNTKVKMRTFKEGKLVLRKVMQNTRDPNAGALGPAWERPYQVSKVVRPDTFALVDENGRPTPHPWNTEYLKIYYQ
        +A LR   YKNRIA+YYN +VK R+F  G LVLR+V  +TRDP+AG LG  WE PY+V KV RP T+ L D NGR   HPWN E+LK YYQ
Subjt:  MARLRVVEYKNRIARYYNTKVKMRTFKEGKLVLRKVMQNTRDPNAGALGPAWERPYQVSKVVRPDTFALVDENGRPTPHPWNTEYLKIYYQ

GFZ01679.1 hypothetical protein Acr_15g0002880 [Actinidia rufa]5.3e-2260.44Show/hide
Query:  MARLRVVEYKNRIARYYNTKVKMRTFKEGKLVLRKVMQNTRDPNAGALGPAWERPYQVSKVVRPDTFALVDENGRPTPHPWNTEYLKIYYQ
        +A LR   YKNRIA+YYN +VK ++F  G LVLR+V  +TRDP+AG LGP WE PY+V KV RP T+ L D NGR   HPWN E+LK YYQ
Subjt:  MARLRVVEYKNRIARYYNTKVKMRTFKEGKLVLRKVMQNTRDPNAGALGPAWERPYQVSKVVRPDTFALVDENGRPTPHPWNTEYLKIYYQ

XP_022156561.1 uncharacterized protein LOC111023436 [Momordica charantia]5.6e-2462.92Show/hide
Query:  ARLRVVEYKNRIARYYNTKVKMRTFKEGKLVLRKVMQNTRDPNAGALGPAWERPYQVSKVVRPDTFALVDENGRPTPHPWNTEYLKIYY
        ARLR  EYKNRIARYYN+KVK R FKEG LVLRK+M NT+D  +GA  P WE PY+V+KVVR  T+AL D+ G+   HPW+ ++LK YY
Subjt:  ARLRVVEYKNRIARYYNTKVKMRTFKEGKLVLRKVMQNTRDPNAGALGPAWERPYQVSKVVRPDTFALVDENGRPTPHPWNTEYLKIYY

XP_022158579.1 uncharacterized protein LOC111025033 [Momordica charantia]1.5e-2465.17Show/hide
Query:  ARLRVVEYKNRIARYYNTKVKMRTFKEGKLVLRKVMQNTRDPNAGALGPAWERPYQVSKVVRPDTFALVDENGRPTPHPWNTEYLKIYY
        ARLR  EYKNRIARYYN+KVK R FKEG LVLRKVM NT+D  +GALGP WE PY+ +KVVR  T+AL D+ G+   HPW+ ++LK YY
Subjt:  ARLRVVEYKNRIARYYNTKVKMRTFKEGKLVLRKVMQNTRDPNAGALGPAWERPYQVSKVVRPDTFALVDENGRPTPHPWNTEYLKIYY

TrEMBL top hitse value%identityAlignment
A0A6J1DVB6 uncharacterized protein LOC1110234362.7e-2462.92Show/hide
Query:  ARLRVVEYKNRIARYYNTKVKMRTFKEGKLVLRKVMQNTRDPNAGALGPAWERPYQVSKVVRPDTFALVDENGRPTPHPWNTEYLKIYY
        ARLR  EYKNRIARYYN+KVK R FKEG LVLRK+M NT+D  +GA  P WE PY+V+KVVR  T+AL D+ G+   HPW+ ++LK YY
Subjt:  ARLRVVEYKNRIARYYNTKVKMRTFKEGKLVLRKVMQNTRDPNAGALGPAWERPYQVSKVVRPDTFALVDENGRPTPHPWNTEYLKIYY

A0A6J1DZU0 Ribonuclease H7.2e-2565.17Show/hide
Query:  ARLRVVEYKNRIARYYNTKVKMRTFKEGKLVLRKVMQNTRDPNAGALGPAWERPYQVSKVVRPDTFALVDENGRPTPHPWNTEYLKIYY
        ARLR  EYKNRIARYYN+KVK R FKEG LVLRKVM NT+D  +GALGP WE PY+ +KVVR  T+AL D+ G+   HPW+ ++LK YY
Subjt:  ARLRVVEYKNRIARYYNTKVKMRTFKEGKLVLRKVMQNTRDPNAGALGPAWERPYQVSKVVRPDTFALVDENGRPTPHPWNTEYLKIYY

A0A7J0FDU3 Ribonuclease H4.4e-2261.11Show/hide
Query:  ARLRVVEYKNRIARYYNTKVKMRTFKEGKLVLRKVMQNTRDPNAGALGPAWERPYQVSKVVRPDTFALVDENGRPTPHPWNTEYLKIYYQ
        A LR   YKNRIA+YYN +VK R+F  G LVLR+V  +TRDP+AG LGP WE PY+V KV RP T+ L D NG+   HPWN E+LK YYQ
Subjt:  ARLRVVEYKNRIARYYNTKVKMRTFKEGKLVLRKVMQNTRDPNAGALGPAWERPYQVSKVVRPDTFALVDENGRPTPHPWNTEYLKIYYQ

A0A7J0FEH3 Integrase catalytic domain-containing protein7.4e-2260.44Show/hide
Query:  MARLRVVEYKNRIARYYNTKVKMRTFKEGKLVLRKVMQNTRDPNAGALGPAWERPYQVSKVVRPDTFALVDENGRPTPHPWNTEYLKIYYQ
        +A LR   YKNRIA+YYN +VK R+F  G LVLR+V  +TRDP+AG LG  WE PY+V KV RP T+ L D NGR   HPWN E+LK YYQ
Subjt:  MARLRVVEYKNRIARYYNTKVKMRTFKEGKLVLRKVMQNTRDPNAGALGPAWERPYQVSKVVRPDTFALVDENGRPTPHPWNTEYLKIYYQ

A0A7J0FSK0 Ribonuclease H2.6e-2260.44Show/hide
Query:  MARLRVVEYKNRIARYYNTKVKMRTFKEGKLVLRKVMQNTRDPNAGALGPAWERPYQVSKVVRPDTFALVDENGRPTPHPWNTEYLKIYYQ
        +A LR   YKNRIA+YYN +VK ++F  G LVLR+V  +TRDP+AG LGP WE PY+V KV RP T+ L D NGR   HPWN E+LK YYQ
Subjt:  MARLRVVEYKNRIARYYNTKVKMRTFKEGKLVLRKVMQNTRDPNAGALGPAWERPYQVSKVVRPDTFALVDENGRPTPHPWNTEYLKIYYQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACGACTTCGAGTTGTGGAGTATAAAAACAGGATTGCCAGGTATTATAACACAAAGGTGAAAATGCGCACTTTCAAGGAGGGAAAACTAGTATTGAGGAAAGTCAT
GCAAAACACTAGAGATCCCAATGCAGGTGCCCTGGGACCAGCATGGGAAAGACCTTATCAAGTTAGCAAAGTGGTCCGCCCCGACACTTTTGCCTTGGTTGACGAAAACG
GAAGACCAACTCCACACCCATGGAATACAGAATATCTGAAGATCTACTATCAGTTGCGATGCGTGTGGCTAGACAAGAATTATCCTTGCAAAGGCCAAACTTCCGTACTT
TCCCAGTCTCCGATTAGGAAGAGGCTAATTCCTGCAGAGAGGTTGACGTATATCCTCAACCTCCCCAGGTCCCCAACAGAGTGTACGCACCCTCGGGATGAAATCAATTC
CTGCAGAGAGGTTGACGTATTTCCTCAACCTCCCCAGGTCCCCAACAGAGTGTACGCACCCTTGGGAAGAAATAAATTCCTGCAGAGAGGTTGGCGTATTTCCTCAACCT
CCCCAAGTCCCCAACAGAGTGTACGCACCCTTGGAAAGAAATCAATTCCTGTAGAGAGATTGGCGTATTTCCTCAGCCTCCCCAGGTCCCCAACAGAGTGTACGCACCCT
TGGGATGAAATCAATTCCTGCAGAGATGTTGACACATCTCCACAACCTCCTCAAGGCCACAGGTTACCTCAACTCATCTGGTTGGGCACATCTTGCCAAGTCCGAGCACA
AACCCTAAAGCCCTGGATCTGGAATGAAGCACTCCGAATGACCAAGTACGGGGGTCTCGCTGTCGAGGCCGAGGCCGACCAGAGAGGCCCTCTAGCCACTTTTGTAATTT
TGGACCACTTTGATGCACAAGGAGCAGACGAGGACAACCAGGTAGAGATGGGACCAGGAAACCGACTCAGAGGAAGACCAGACCAAAGGGTCATATCTTCCCCGTCCTCA
ACAAATTCACTGTTGGTGTCACGTGAAGGTCAAATGAGTTGCTTGACCGGATTTTGGCATCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCACGACTTCGAGTTGTGGAGTATAAAAACAGGATTGCCAGGTATTATAACACAAAGGTGAAAATGCGCACTTTCAAGGAGGGAAAACTAGTATTGAGGAAAGTCAT
GCAAAACACTAGAGATCCCAATGCAGGTGCCCTGGGACCAGCATGGGAAAGACCTTATCAAGTTAGCAAAGTGGTCCGCCCCGACACTTTTGCCTTGGTTGACGAAAACG
GAAGACCAACTCCACACCCATGGAATACAGAATATCTGAAGATCTACTATCAGTTGCGATGCGTGTGGCTAGACAAGAATTATCCTTGCAAAGGCCAAACTTCCGTACTT
TCCCAGTCTCCGATTAGGAAGAGGCTAATTCCTGCAGAGAGGTTGACGTATATCCTCAACCTCCCCAGGTCCCCAACAGAGTGTACGCACCCTCGGGATGAAATCAATTC
CTGCAGAGAGGTTGACGTATTTCCTCAACCTCCCCAGGTCCCCAACAGAGTGTACGCACCCTTGGGAAGAAATAAATTCCTGCAGAGAGGTTGGCGTATTTCCTCAACCT
CCCCAAGTCCCCAACAGAGTGTACGCACCCTTGGAAAGAAATCAATTCCTGTAGAGAGATTGGCGTATTTCCTCAGCCTCCCCAGGTCCCCAACAGAGTGTACGCACCCT
TGGGATGAAATCAATTCCTGCAGAGATGTTGACACATCTCCACAACCTCCTCAAGGCCACAGGTTACCTCAACTCATCTGGTTGGGCACATCTTGCCAAGTCCGAGCACA
AACCCTAAAGCCCTGGATCTGGAATGAAGCACTCCGAATGACCAAGTACGGGGGTCTCGCTGTCGAGGCCGAGGCCGACCAGAGAGGCCCTCTAGCCACTTTTGTAATTT
TGGACCACTTTGATGCACAAGGAGCAGACGAGGACAACCAGGTAGAGATGGGACCAGGAAACCGACTCAGAGGAAGACCAGACCAAAGGGTCATATCTTCCCCGTCCTCA
ACAAATTCACTGTTGGTGTCACGTGAAGGTCAAATGAGTTGCTTGACCGGATTTTGGCATCAATAG
Protein sequenceShow/hide protein sequence
MARLRVVEYKNRIARYYNTKVKMRTFKEGKLVLRKVMQNTRDPNAGALGPAWERPYQVSKVVRPDTFALVDENGRPTPHPWNTEYLKIYYQLRCVWLDKNYPCKGQTSVL
SQSPIRKRLIPAERLTYILNLPRSPTECTHPRDEINSCREVDVFPQPPQVPNRVYAPLGRNKFLQRGWRISSTSPSPQQSVRTLGKKSIPVERLAYFLSLPRSPTECTHP
WDEINSCRDVDTSPQPPQGHRLPQLIWLGTSCQVRAQTLKPWIWNEALRMTKYGGLAVEAEADQRGPLATFVILDHFDAQGADEDNQVEMGPGNRLRGRPDQRVISSPSS
TNSLLVSREGQMSCLTGFWHQ