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Lag0038401 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038401
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr2:16776855..16778236
RNA-Seq ExpressionLag0038401
SyntenyLag0038401
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031951.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]2.5e-0634.26Show/hide
Query:  VHGPRAHIVLTPEILTSRIIKLEGTTSE-----------LQNSLRCGKQGHIANQCPTRKQIAIMEECGNEDDDINDDNEGEGEIEYADDNEGEQLNCVV
        +HGP   +   P+I +   IK   ++S+           L    +CG+QGH++N+CP R+ + I EE   + DD +DDN      + +  +E +QL CV+
Subjt:  VHGPRAHIVLTPEILTSRIIKLEGTTSE-----------LQNSLRCGKQGHIANQCPTRKQIAIMEECGNEDDDINDDNEGEGEIEYADDNEGEQLNCVV

Query:  QHILLTPK
        Q ILLTP+
Subjt:  QHILLTPK

PON83156.1 Zinc finger, CCHC-type [Trema orientale]7.4e-0639.13Show/hide
Query:  LQNSLRCGKQGHIANQCPTRKQIAIMEECGNEDDDINDDNEGEGEIEYADDNEGEQLNCVVQHILLTPK
        L    RC + GH++N CP R+ I +++E G ED+ + +++  EG  E+A+ +EGE++ C++Q +L TPK
Subjt:  LQNSLRCGKQGHIANQCPTRKQIAIMEECGNEDDDINDDNEGEGEIEYADDNEGEQLNCVVQHILLTPK

XP_020887735.1 uncharacterized protein LOC110230088 [Arabidopsis lyrata subsp. lyrata]1.9e-0650Show/hide
Query:  RCGKQGHIANQCPTRKQIAIMEECGNEDDDINDDNEGEGEIEYADDNEGEQLNCVVQHILLTPK
        RCG QGHI+N CP+RK +A++EE   E+D+  +DNE EG +E+A++   +++NCV+Q ILL+ K
Subjt:  RCGKQGHIANQCPTRKQIAIMEECGNEDDDINDDNEGEGEIEYADDNEGEQLNCVVQHILLTPK

XP_031743026.1 uncharacterized protein LOC116404533 [Cucumis sativus]7.4e-0644.93Show/hide
Query:  LQNSLRCGKQGHIANQCPTRKQIAIMEECGNEDDDINDDNEGEGEIEYADDNEGEQLNCVVQHILLTPK
        L    RCG+ GH++N CP RK IAI EE G   +   D  E E E E  + ++GE+++CV+Q +L+TPK
Subjt:  LQNSLRCGKQGHIANQCPTRKQIAIMEECGNEDDDINDDNEGEGEIEYADDNEGEQLNCVVQHILLTPK

XP_031745468.1 uncharacterized protein LOC116405837 [Cucumis sativus]1.6e-0543.48Show/hide
Query:  LQNSLRCGKQGHIANQCPTRKQIAIMEECGNEDDDINDDNEGEGEIEYADDNEGEQLNCVVQHILLTPK
        L    RCG+ GH++N CP RK IAI E+ G   +   D  E E E E  + ++GE+++CV+Q +L+TPK
Subjt:  LQNSLRCGKQGHIANQCPTRKQIAIMEECGNEDDDINDDNEGEGEIEYADDNEGEQLNCVVQHILLTPK

TrEMBL top hitse value%identityAlignment
A0A2N9IIB5 Reverse transcriptase1.2e-0441.79Show/hide
Query:  RCGKQGHIANQCPTRKQIAIMEECGNEDDDINDDNEGEG---EIEYADDNEGEQLNCVVQHILLTPK
        RCGK GH +N CP R+ + ++EE     +D++D++E  G    +E+A++  GE++NCVVQ +L  PK
Subjt:  RCGKQGHIANQCPTRKQIAIMEECGNEDDDINDDNEGEG---EIEYADDNEGEQLNCVVQHILLTPK

A0A2P5EC93 Zinc finger, CCHC-type3.6e-0639.13Show/hide
Query:  LQNSLRCGKQGHIANQCPTRKQIAIMEECGNEDDDINDDNEGEGEIEYADDNEGEQLNCVVQHILLTPK
        L    RC + GH++N CP R+ I +++E G ED+ + +++  EG  E+A+ +EGE++ C++Q +L TPK
Subjt:  LQNSLRCGKQGHIANQCPTRKQIAIMEECGNEDDDINDDNEGEGEIEYADDNEGEQLNCVVQHILLTPK

A0A5A7SQX1 Transposon Ty3-G Gag-Pol polyprotein1.2e-0634.26Show/hide
Query:  VHGPRAHIVLTPEILTSRIIKLEGTTSE-----------LQNSLRCGKQGHIANQCPTRKQIAIMEECGNEDDDINDDNEGEGEIEYADDNEGEQLNCVV
        +HGP   +   P+I +   IK   ++S+           L    +CG+QGH++N+CP R+ + I EE   + DD +DDN      + +  +E +QL CV+
Subjt:  VHGPRAHIVLTPEILTSRIIKLEGTTSE-----------LQNSLRCGKQGHIANQCPTRKQIAIMEECGNEDDDINDDNEGEGEIEYADDNEGEQLNCVV

Query:  QHILLTPK
        Q ILLTP+
Subjt:  QHILLTPK

A0A5A7SRH4 Zf-CCHC domain-containing protein5.2e-0536.99Show/hide
Query:  TTSELQNSLRCGKQGHIANQCPTRKQIAIMEECGNEDDDINDDNEGEGEIEYADDNEGEQLNCVVQHILLTPK
        T   L    RCG+  H++N CP RK IA+++E  N   +  DD + E E E+ + ++G++++CV+Q +L+ PK
Subjt:  TTSELQNSLRCGKQGHIANQCPTRKQIAIMEECGNEDDDINDDNEGEGEIEYADDNEGEQLNCVVQHILLTPK

A0A5A7U5B9 CCHC-type domain-containing protein8.8e-0540.54Show/hide
Query:  SELQNSLRCGKQGHIANQCPTRKQIAIMEECGNEDDDINDDNEGE--GEIEYADDNEGEQLNCVVQHILLTPKT
        + L     CG+ GH++N CP RK +AI+E    ED+D  ++ E +   E E  + N+GE+L+CV+Q  L+TPK+
Subjt:  SELQNSLRCGKQGHIANQCPTRKQIAIMEECGNEDDDINDDNEGE--GEIEYADDNEGEQLNCVVQHILLTPKT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGGTCAAAGAGATAATCTCAATCCAGACATAGTTCAGATTGGGAACGAGGATGATGTCGCAGTGCACGGTCCACGAGCACATATTGTGTTAACACCTGAAATCCT
TACTTCAAGAATTATCAAACTTGAAGGGACAACAAGTGAGTTACAAAATTCTTTGAGATGTGGAAAACAAGGACATATTGCTAATCAGTGCCCAACAAGAAAACAAATTG
CAATAATGGAAGAATGTGGAAATGAAGATGATGATATTAATGATGATAATGAAGGAGAGGGGGAAATTGAATATGCTGACGATAATGAAGGAGAACAATTAAATTGTGTT
GTTCAACACATTTTACTAACACCGAAAACAAAAATCATCATCAACGACATTCTTGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGGTCAAAGAGATAATCTCAATCCAGACATAGTTCAGATTGGGAACGAGGATGATGTCGCAGTGCACGGTCCACGAGCACATATTGTGTTAACACCTGAAATCCT
TACTTCAAGAATTATCAAACTTGAAGGGACAACAAGTGAGTTACAAAATTCTTTGAGATGTGGAAAACAAGGACATATTGCTAATCAGTGCCCAACAAGAAAACAAATTG
CAATAATGGAAGAATGTGGAAATGAAGATGATGATATTAATGATGATAATGAAGGAGAGGGGGAAATTGAATATGCTGACGATAATGAAGGAGAACAATTAAATTGTGTT
GTTCAACACATTTTACTAACACCGAAAACAAAAATCATCATCAACGACATTCTTGTTTAG
Protein sequenceShow/hide protein sequence
MVGQRDNLNPDIVQIGNEDDVAVHGPRAHIVLTPEILTSRIIKLEGTTSELQNSLRCGKQGHIANQCPTRKQIAIMEECGNEDDDINDDNEGEGEIEYADDNEGEQLNCV
VQHILLTPKTKIIINDILV