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Lag0038407 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038407
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptiontRNA:m(4)X modification enzyme TRM13
Genome locationchr2:16855914..16861682
RNA-Seq ExpressionLag0038407
SyntenyLag0038407
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0044237 - cellular metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0071704 - organic substance metabolic process (biological process)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsIPR038071 - UROD/MetE-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575728.1 tRNA:m(4)X modification enzyme TRM13, partial [Cucurbita argyrosperma subsp. sororia]3.1e-3048.28Show/hide
Query:  WACKEVSIVEANSILGCSIVLSKGYQCWEEDLISSDEPTLGLLDSISSEMKRNIIYGMFGAEFHRLLRKIKALH--------------------------
        W  K   +++    L       KG    EED ISS+E   GL D ISSEMKRNI+YGM GAEFHRLL KI+ALH                          
Subjt:  WACKEVSIVEANSILGCSIVLSKGYQCWEEDLISSDEPTLGLLDSISSEMKRNIIYGMFGAEFHRLLRKIKALH--------------------------

Query:  ---------------------ESGVLRNYDGGEQCEGNRSYGNEANVVLAEVEVGAGRGYLTQMLADCYVIKKV
                             E GVLRNYDGGEQCEGNRS GNEANV  A +E GAGRGYLTQMLADCY IK+V
Subjt:  ---------------------ESGVLRNYDGGEQCEGNRSYGNEANVVLAEVEVGAGRGYLTQMLADCYVIKKV

KAG7014284.1 tRNA:m(4)X modification enzyme TRM13-like protein [Cucurbita argyrosperma subsp. argyrosperma]8.2e-3148.85Show/hide
Query:  WACKEVSIVEANSILGCSIVLSKGYQCWEEDLISSDEPTLGLLDSISSEMKRNIIYGMFGAEFHRLLRKIKALH--------------------------
        W  K   +++    L       KG    EED ISSDE   GL D ISSEMKRNI+YGM GAEFHRLL KI+ALH                          
Subjt:  WACKEVSIVEANSILGCSIVLSKGYQCWEEDLISSDEPTLGLLDSISSEMKRNIIYGMFGAEFHRLLRKIKALH--------------------------

Query:  ---------------------ESGVLRNYDGGEQCEGNRSYGNEANVVLAEVEVGAGRGYLTQMLADCYVIKKV
                             E GVLRNYDGGEQCEGNRS GNEANV  A +E GAGRGYLTQMLADCY IK+V
Subjt:  ---------------------ESGVLRNYDGGEQCEGNRSYGNEANVVLAEVEVGAGRGYLTQMLADCYVIKKV

XP_022954384.1 tRNA:m(4)X modification enzyme TRM13 homolog [Cucurbita moschata]2.8e-3149.43Show/hide
Query:  WACKEVSIVEANSILGCSIVLSKGYQCWEEDLISSDEPTLGLLDSISSEMKRNIIYGMFGAEFHRLLRKIKALH--------------------------
        W  K   +++    L       KG    EED ISSDE   GL DSISSEMKRNI+YGM GAEFHRLL KI+ALH                          
Subjt:  WACKEVSIVEANSILGCSIVLSKGYQCWEEDLISSDEPTLGLLDSISSEMKRNIIYGMFGAEFHRLLRKIKALH--------------------------

Query:  ---------------------ESGVLRNYDGGEQCEGNRSYGNEANVVLAEVEVGAGRGYLTQMLADCYVIKKV
                             E GVLRNYDGGEQCEGNRS GNEANV  A +E GAGRGYLTQMLADCY IK+V
Subjt:  ---------------------ESGVLRNYDGGEQCEGNRSYGNEANVVLAEVEVGAGRGYLTQMLADCYVIKKV

XP_022991622.1 tRNA:m(4)X modification enzyme TRM13 homolog [Cucurbita maxima]3.7e-3148.85Show/hide
Query:  WACKEVSIVEANSILGCSIVLSKGYQCWEEDLISSDEPTLGLLDSISSEMKRNIIYGMFGAEFHRLLRKIKALH--------------------------
        W  K   +++    L       KG    EED ISSDE   GL DSISSEMKRN++YGM GAEFHRLL KI+ALH                          
Subjt:  WACKEVSIVEANSILGCSIVLSKGYQCWEEDLISSDEPTLGLLDSISSEMKRNIIYGMFGAEFHRLLRKIKALH--------------------------

Query:  ---------------------ESGVLRNYDGGEQCEGNRSYGNEANVVLAEVEVGAGRGYLTQMLADCYVIKKV
                             E GVLRNYDGGEQCEGNRS GNEANV  A +E GAGRGYLTQMLADCY IK+V
Subjt:  ---------------------ESGVLRNYDGGEQCEGNRSYGNEANVVLAEVEVGAGRGYLTQMLADCYVIKKV

XP_023547814.1 tRNA:m(4)X modification enzyme TRM13 homolog [Cucurbita pepo subsp. pepo]8.2e-3148.85Show/hide
Query:  WACKEVSIVEANSILGCSIVLSKGYQCWEEDLISSDEPTLGLLDSISSEMKRNIIYGMFGAEFHRLLRKIKALH--------------------------
        W  K   +++    L       KG    EED ISSDE   G  DSISSEMKRNI+YGM GAEFHRLL KI+ALH                          
Subjt:  WACKEVSIVEANSILGCSIVLSKGYQCWEEDLISSDEPTLGLLDSISSEMKRNIIYGMFGAEFHRLLRKIKALH--------------------------

Query:  ---------------------ESGVLRNYDGGEQCEGNRSYGNEANVVLAEVEVGAGRGYLTQMLADCYVIKKV
                             E GVLRNYDGGEQCEGNRS GNEANV  A +E GAGRGYLTQMLADCY IK+V
Subjt:  ---------------------ESGVLRNYDGGEQCEGNRSYGNEANVVLAEVEVGAGRGYLTQMLADCYVIKKV

TrEMBL top hitse value%identityAlignment
A0A1S4E343 tRNA:m(4)X modification enzyme TRM139.2e-2851.32Show/hide
Query:  KGYQCWEEDLISSDEPTLGLLDSISSEMKRNIIYGMFGAEFHRLLRKIKALH-----------------------------------------------E
        KG    EED +S++ P  GL DSISSEMKRNI+YGM G +FHRLL KI+ALH                                               E
Subjt:  KGYQCWEEDLISSDEPTLGLLDSISSEMKRNIIYGMFGAEFHRLLRKIKALH-----------------------------------------------E

Query:  SGVLRNYDGGEQCEGNRSYGNEANVVLAEVEVGAGRGYLTQMLADCYVIKKV
         GVLRNYDGG+Q EGNRSYGN+ANVV A VE GAGRGYLTQMLADCY IK+V
Subjt:  SGVLRNYDGGEQCEGNRSYGNEANVVLAEVEVGAGRGYLTQMLADCYVIKKV

A0A5A7UYK4 tRNA:m(4)X modification enzyme TRM132.4e-2851.63Show/hide
Query:  KGYQCWEEDLISSDEPTLGLLDSISSEMKRNIIYGMFGAEFHRLLRKIKALH------------------------------------------------
        KG    EEDL+S++ P  GL DSISSEMKRNI+YGM G +FHRLL KI+ALH                                                
Subjt:  KGYQCWEEDLISSDEPTLGLLDSISSEMKRNIIYGMFGAEFHRLLRKIKALH------------------------------------------------

Query:  ESGVLRNYDGGEQCEGNRSYGNEANVVLAEVEVGAGRGYLTQMLADCYVIKKV
        E GVLRNYDGG+Q EGNRSYGN+ANVV A VE GAGRGYLTQMLADCY IK+V
Subjt:  ESGVLRNYDGGEQCEGNRSYGNEANVVLAEVEVGAGRGYLTQMLADCYVIKKV

A0A5D3CJH7 tRNA:m(4)X modification enzyme TRM131.9e-2851.97Show/hide
Query:  KGYQCWEEDLISSDEPTLGLLDSISSEMKRNIIYGMFGAEFHRLLRKIKALH-----------------------------------------------E
        KG    EEDL+S++ P  GL DSISSEMKRNI+YGM G +FHRLL KI+ALH                                               E
Subjt:  KGYQCWEEDLISSDEPTLGLLDSISSEMKRNIIYGMFGAEFHRLLRKIKALH-----------------------------------------------E

Query:  SGVLRNYDGGEQCEGNRSYGNEANVVLAEVEVGAGRGYLTQMLADCYVIKKV
         GVLRNYDGG+Q EGNRSYGN+ANVV A VE GAGRGYLTQMLADCY IK+V
Subjt:  SGVLRNYDGGEQCEGNRSYGNEANVVLAEVEVGAGRGYLTQMLADCYVIKKV

A0A6J1GSU8 tRNA:m(4)X modification enzyme TRM131.4e-3149.43Show/hide
Query:  WACKEVSIVEANSILGCSIVLSKGYQCWEEDLISSDEPTLGLLDSISSEMKRNIIYGMFGAEFHRLLRKIKALH--------------------------
        W  K   +++    L       KG    EED ISSDE   GL DSISSEMKRNI+YGM GAEFHRLL KI+ALH                          
Subjt:  WACKEVSIVEANSILGCSIVLSKGYQCWEEDLISSDEPTLGLLDSISSEMKRNIIYGMFGAEFHRLLRKIKALH--------------------------

Query:  ---------------------ESGVLRNYDGGEQCEGNRSYGNEANVVLAEVEVGAGRGYLTQMLADCYVIKKV
                             E GVLRNYDGGEQCEGNRS GNEANV  A +E GAGRGYLTQMLADCY IK+V
Subjt:  ---------------------ESGVLRNYDGGEQCEGNRSYGNEANVVLAEVEVGAGRGYLTQMLADCYVIKKV

A0A6J1JMC6 tRNA:m(4)X modification enzyme TRM131.8e-3148.85Show/hide
Query:  WACKEVSIVEANSILGCSIVLSKGYQCWEEDLISSDEPTLGLLDSISSEMKRNIIYGMFGAEFHRLLRKIKALH--------------------------
        W  K   +++    L       KG    EED ISSDE   GL DSISSEMKRN++YGM GAEFHRLL KI+ALH                          
Subjt:  WACKEVSIVEANSILGCSIVLSKGYQCWEEDLISSDEPTLGLLDSISSEMKRNIIYGMFGAEFHRLLRKIKALH--------------------------

Query:  ---------------------ESGVLRNYDGGEQCEGNRSYGNEANVVLAEVEVGAGRGYLTQMLADCYVIKKV
                             E GVLRNYDGGEQCEGNRS GNEANV  A +E GAGRGYLTQMLADCY IK+V
Subjt:  ---------------------ESGVLRNYDGGEQCEGNRSYGNEANVVLAEVEVGAGRGYLTQMLADCYVIKKV

SwissProt top hitse value%identityAlignment
O50008 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 19.5e-1462.34Show/hide
Query:  PSVTNEAVQRGDMYIHFLSIRYAALKGSD--------PRLDAQQKKLNLLILPTTTIGSFPQTPELRRVYREYKTNK
        P VTNE VQ+            AALKGSD         RLDAQQKKLNL ILPTTTIGSFPQT ELRRV REYK  K
Subjt:  PSVTNEAVQRGDMYIHFLSIRYAALKGSD--------PRLDAQQKKLNLLILPTTTIGSFPQTPELRRVYREYKTNK

P93263 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase9.5e-1462.34Show/hide
Query:  PSVTNEAVQRGDMYIHFLSIRYAALKGSD--------PRLDAQQKKLNLLILPTTTIGSFPQTPELRRVYREYKTNK
        P VTNEAVQ+             ALKGSD         RLDAQQKKLNL ILPTTTIGSFPQT ELRRV REYK  K
Subjt:  PSVTNEAVQRGDMYIHFLSIRYAALKGSD--------PRLDAQQKKLNLLILPTTTIGSFPQTPELRRVYREYKTNK

Q2QLY5 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 11.6e-1361.04Show/hide
Query:  PSVTNEAVQRGDMYIHFLSIRYAALKGSD--------PRLDAQQKKLNLLILPTTTIGSFPQTPELRRVYREYKTNK
        P VTNE VQ+            AALKGSD         RLDAQQKKLNL +LPTTTIGSFPQT ELRRV REYK  K
Subjt:  PSVTNEAVQRGDMYIHFLSIRYAALKGSD--------PRLDAQQKKLNLLILPTTTIGSFPQTPELRRVYREYKTNK

Q42699 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase2.8e-1359.74Show/hide
Query:  PSVTNEAVQRGDMYIHFLSIRYAALKGSD--------PRLDAQQKKLNLLILPTTTIGSFPQTPELRRVYREYKTNK
        P VTN+AVQ+            AAL+GSD         RLDAQQKKLNL +LPTTTIGSFPQT ELRRV REYK  K
Subjt:  PSVTNEAVQRGDMYIHFLSIRYAALKGSD--------PRLDAQQKKLNLLILPTTTIGSFPQTPELRRVYREYKTNK

Q9SRV5 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 27.3e-1462.34Show/hide
Query:  PSVTNEAVQRGDMYIHFLSIRYAALKGSD--------PRLDAQQKKLNLLILPTTTIGSFPQTPELRRVYREYKTNK
        P VTNE+VQ+            AALKGSD         RLDAQQKKLNL ILPTTTIGSFPQT ELRRV REYK  K
Subjt:  PSVTNEAVQRGDMYIHFLSIRYAALKGSD--------PRLDAQQKKLNLLILPTTTIGSFPQTPELRRVYREYKTNK

Arabidopsis top hitse value%identityAlignment
AT3G03780.1 methionine synthase 25.2e-1562.34Show/hide
Query:  PSVTNEAVQRGDMYIHFLSIRYAALKGSD--------PRLDAQQKKLNLLILPTTTIGSFPQTPELRRVYREYKTNK
        P VTNE+VQ+            AALKGSD         RLDAQQKKLNL ILPTTTIGSFPQT ELRRV REYK  K
Subjt:  PSVTNEAVQRGDMYIHFLSIRYAALKGSD--------PRLDAQQKKLNLLILPTTTIGSFPQTPELRRVYREYKTNK

AT3G03780.2 methionine synthase 25.2e-1562.34Show/hide
Query:  PSVTNEAVQRGDMYIHFLSIRYAALKGSD--------PRLDAQQKKLNLLILPTTTIGSFPQTPELRRVYREYKTNK
        P VTNE+VQ+            AALKGSD         RLDAQQKKLNL ILPTTTIGSFPQT ELRRV REYK  K
Subjt:  PSVTNEAVQRGDMYIHFLSIRYAALKGSD--------PRLDAQQKKLNLLILPTTTIGSFPQTPELRRVYREYKTNK

AT3G03780.3 methionine synthase 25.2e-1562.34Show/hide
Query:  PSVTNEAVQRGDMYIHFLSIRYAALKGSD--------PRLDAQQKKLNLLILPTTTIGSFPQTPELRRVYREYKTNK
        P VTNE+VQ+            AALKGSD         RLDAQQKKLNL ILPTTTIGSFPQT ELRRV REYK  K
Subjt:  PSVTNEAVQRGDMYIHFLSIRYAALKGSD--------PRLDAQQKKLNLLILPTTTIGSFPQTPELRRVYREYKTNK

AT5G17920.1 Cobalamin-independent synthase family protein6.8e-1562.34Show/hide
Query:  PSVTNEAVQRGDMYIHFLSIRYAALKGSD--------PRLDAQQKKLNLLILPTTTIGSFPQTPELRRVYREYKTNK
        P VTNE VQ+            AALKGSD         RLDAQQKKLNL ILPTTTIGSFPQT ELRRV REYK  K
Subjt:  PSVTNEAVQRGDMYIHFLSIRYAALKGSD--------PRLDAQQKKLNLLILPTTTIGSFPQTPELRRVYREYKTNK

AT5G17920.2 Cobalamin-independent synthase family protein6.8e-1562.34Show/hide
Query:  PSVTNEAVQRGDMYIHFLSIRYAALKGSD--------PRLDAQQKKLNLLILPTTTIGSFPQTPELRRVYREYKTNK
        P VTNE VQ+            AALKGSD         RLDAQQKKLNL ILPTTTIGSFPQT ELRRV REYK  K
Subjt:  PSVTNEAVQRGDMYIHFLSIRYAALKGSD--------PRLDAQQKKLNLLILPTTTIGSFPQTPELRRVYREYKTNK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATATGGGGAACACACACCCTTCTCCATTAGTTGGCTTCCTCTCACCTCCGGCCATCTCCGGCGACAGCAACTGCTGCCGGCACCACGCTCCTTCGACGGCAGCGGC
GCACGAAAAGACGCGTGGAACAAGTTTTCTCCCTCGTTCCAATCTCTCTCTCGCTCGGTATCTCTTTTTCTCTCATCTTCAACGAGCTGCAGCATCATTAGTGTGTCGTT
CACGATCAGATCGGCACGACAGTGATAATTTTTCTTTGGTTTTCGATTTCTTTTATGGTTTTTCGGAAATTACAGCTCGAGAGCTGATGAACTGTGGGTTCGTGTCCTGT
AGACCCGTCACATTGTGTGCTTTGAAAAAATCTCGATGGGCATGTAAAGAGGTGTCTATTGTTGAAGCAAACTCAATCCTTGGTTGTTCAATCGTTCTATCAAAAGGGTA
TCAATGCTGGGAGGAGGATTTGATATCTTCCGATGAACCAACTTTGGGTTTATTAGATAGCATTTCCTCTGAAATGAAGAGGAATATCATTTATGGCATGTTTGGAGCTG
AGTTTCATCGACTTCTTAGAAAGATTAAAGCTCTTCATGAATCTGGAGTGCTAAGGAATTATGATGGAGGGGAACAATGTGAGGGTAACAGATCATATGGCAATGAGGCT
AATGTTGTCCTAGCGGAGGTTGAGGTTGGAGCAGGAAGAGGCTACTTAACTCAAATGCTTGCAGATTGTTATGTTATCAAAAAGGTCGAAATTGAAAGGGTTGGTTGCAG
TGACTTGTTGTCATCACCTTTGTCAATGGAAGCATTACACAAGCATTCTTTGCCATTAATGATGAAGCTCATGTTTCAAGGAAGTCGTCCCCCAAGTGTGACCAACGAGG
CTGTTCAGAGAGGCGATATGTACATCCATTTCTTATCTATAAGATATGCTGCTTTGAAGGGCTCTGATCCAAGACTTGATGCTCAACAGAAGAAGCTTAATCTTTTAATC
CTTCCAACCACCACCATTGGTTCCTTCCCTCAAACTCCTGAACTCAGGAGGGTTTATCGTGAATACAAAACTAACAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATATGGGGAACACACACCCTTCTCCATTAGTTGGCTTCCTCTCACCTCCGGCCATCTCCGGCGACAGCAACTGCTGCCGGCACCACGCTCCTTCGACGGCAGCGGC
GCACGAAAAGACGCGTGGAACAAGTTTTCTCCCTCGTTCCAATCTCTCTCTCGCTCGGTATCTCTTTTTCTCTCATCTTCAACGAGCTGCAGCATCATTAGTGTGTCGTT
CACGATCAGATCGGCACGACAGTGATAATTTTTCTTTGGTTTTCGATTTCTTTTATGGTTTTTCGGAAATTACAGCTCGAGAGCTGATGAACTGTGGGTTCGTGTCCTGT
AGACCCGTCACATTGTGTGCTTTGAAAAAATCTCGATGGGCATGTAAAGAGGTGTCTATTGTTGAAGCAAACTCAATCCTTGGTTGTTCAATCGTTCTATCAAAAGGGTA
TCAATGCTGGGAGGAGGATTTGATATCTTCCGATGAACCAACTTTGGGTTTATTAGATAGCATTTCCTCTGAAATGAAGAGGAATATCATTTATGGCATGTTTGGAGCTG
AGTTTCATCGACTTCTTAGAAAGATTAAAGCTCTTCATGAATCTGGAGTGCTAAGGAATTATGATGGAGGGGAACAATGTGAGGGTAACAGATCATATGGCAATGAGGCT
AATGTTGTCCTAGCGGAGGTTGAGGTTGGAGCAGGAAGAGGCTACTTAACTCAAATGCTTGCAGATTGTTATGTTATCAAAAAGGTCGAAATTGAAAGGGTTGGTTGCAG
TGACTTGTTGTCATCACCTTTGTCAATGGAAGCATTACACAAGCATTCTTTGCCATTAATGATGAAGCTCATGTTTCAAGGAAGTCGTCCCCCAAGTGTGACCAACGAGG
CTGTTCAGAGAGGCGATATGTACATCCATTTCTTATCTATAAGATATGCTGCTTTGAAGGGCTCTGATCCAAGACTTGATGCTCAACAGAAGAAGCTTAATCTTTTAATC
CTTCCAACCACCACCATTGGTTCCTTCCCTCAAACTCCTGAACTCAGGAGGGTTTATCGTGAATACAAAACTAACAAGTGA
Protein sequenceShow/hide protein sequence
MDMGNTHPSPLVGFLSPPAISGDSNCCRHHAPSTAAAHEKTRGTSFLPRSNLSLARYLFFSHLQRAAASLVCRSRSDRHDSDNFSLVFDFFYGFSEITARELMNCGFVSC
RPVTLCALKKSRWACKEVSIVEANSILGCSIVLSKGYQCWEEDLISSDEPTLGLLDSISSEMKRNIIYGMFGAEFHRLLRKIKALHESGVLRNYDGGEQCEGNRSYGNEA
NVVLAEVEVGAGRGYLTQMLADCYVIKKVEIERVGCSDLLSSPLSMEALHKHSLPLMMKLMFQGSRPPSVTNEAVQRGDMYIHFLSIRYAALKGSDPRLDAQQKKLNLLI
LPTTTIGSFPQTPELRRVYREYKTNK