; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0038408 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038408
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationchr2:16862486..16862899
RNA-Seq ExpressionLag0038408
SyntenyLag0038408
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0009451 - RNA modification (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0004185 - serine-type carboxypeptidase activity (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6592177.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]1.6e-4675.57Show/hide
Query:  IKSMHLNTFTCSSELPLFFNRPDVARITSNSTPNPIQNKLLPENHEFYSKLLQLCLQQCRRIKAHNLFDEKPKPVLQALRTAKVIHSKSLKFGVGLKGLL
        +KSM LN+FTCSS LP F N P+V RI S ST + I N+ L E+H  +S+LLQLCL  CRRIKAHNLFDEKP+PVLQ LRTAKVIHSKSLK GVGL GLL
Subjt:  IKSMHLNTFTCSSELPLFFNRPDVARITSNSTPNPIQNKLLPENHEFYSKLLQLCLQQCRRIKAHNLFDEKPKPVLQALRTAKVIHSKSLKFGVGLKGLL

Query:  GNAIVDLYVKCGNVDFAQKAFSWLEKKDVFA
        GNAIVDLYVKCGNVD+AQK FS LEKKDVFA
Subjt:  GNAIVDLYVKCGNVDFAQKAFSWLEKKDVFA

KAG7025038.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-4677.34Show/hide
Query:  MHLNTFTCSSELPLFFNRPDVARITSNSTPNPIQNKLLPENHEFYSKLLQLCLQQCRRIKAHNLFDEKPKPVLQALRTAKVIHSKSLKFGVGLKGLLGNA
        M LN+FTCSS LP F N P+VARI S ST + I N+LL E+H  +S+LLQLCL  CRRIKAHNLFDEKP+PVLQ LRTAKVIHSKSLK GVGL GLLGNA
Subjt:  MHLNTFTCSSELPLFFNRPDVARITSNSTPNPIQNKLLPENHEFYSKLLQLCLQQCRRIKAHNLFDEKPKPVLQALRTAKVIHSKSLKFGVGLKGLLGNA

Query:  IVDLYVKCGNVDFAQKAFSWLEKKDVFA
        IVDLYVKCGNVD+AQK FS LEKKDVFA
Subjt:  IVDLYVKCGNVDFAQKAFSWLEKKDVFA

XP_022935750.1 pentatricopeptide repeat-containing protein At3g09040, mitochondrial [Cucurbita moschata]3.2e-4776.34Show/hide
Query:  IKSMHLNTFTCSSELPLFFNRPDVARITSNSTPNPIQNKLLPENHEFYSKLLQLCLQQCRRIKAHNLFDEKPKPVLQALRTAKVIHSKSLKFGVGLKGLL
        +KSM LN+FTCSS LP F N P+VARI S ST + I N+ L E+H  +S+LLQLCL  CRRIKAHNLFDEKP+PVLQ LRTAKVIHSKSLK GVGL GLL
Subjt:  IKSMHLNTFTCSSELPLFFNRPDVARITSNSTPNPIQNKLLPENHEFYSKLLQLCLQQCRRIKAHNLFDEKPKPVLQALRTAKVIHSKSLKFGVGLKGLL

Query:  GNAIVDLYVKCGNVDFAQKAFSWLEKKDVFA
        GNAIVDLYVKCGNVD+AQK FS LEKKDVFA
Subjt:  GNAIVDLYVKCGNVDFAQKAFSWLEKKDVFA

XP_022974928.1 pentatricopeptide repeat-containing protein At3g09040, mitochondrial [Cucurbita maxima]9.8e-4977.86Show/hide
Query:  IKSMHLNTFTCSSELPLFFNRPDVARITSNSTPNPIQNKLLPENHEFYSKLLQLCLQQCRRIKAHNLFDEKPKPVLQALRTAKVIHSKSLKFGVGLKGLL
        +KSM LN+FTCSS LP F N  +VARI S STP+ I N+LL E+H  +SK LQ+CLQ CRRIK HNLFDEKPKPVLQALRTAKVIHSKSLK GVGL GLL
Subjt:  IKSMHLNTFTCSSELPLFFNRPDVARITSNSTPNPIQNKLLPENHEFYSKLLQLCLQQCRRIKAHNLFDEKPKPVLQALRTAKVIHSKSLKFGVGLKGLL

Query:  GNAIVDLYVKCGNVDFAQKAFSWLEKKDVFA
        GNAIVDLYVKCGNVD+AQK FS LEKKDVFA
Subjt:  GNAIVDLYVKCGNVDFAQKAFSWLEKKDVFA

XP_023534935.1 pentatricopeptide repeat-containing protein At3g09040, mitochondrial [Cucurbita pepo subsp. pepo]1.4e-4775.57Show/hide
Query:  IKSMHLNTFTCSSELPLFFNRPDVARITSNSTPNPIQNKLLPENHEFYSKLLQLCLQQCRRIKAHNLFDEKPKPVLQALRTAKVIHSKSLKFGVGLKGLL
        +KSM LN+FTCSS LP F N P VARI S STP+ I N++L E+H  +S+LLQLCL  CRRIKAHNLFDEKP+PVL+ALRT+KVIHSKSLK GVGL GLL
Subjt:  IKSMHLNTFTCSSELPLFFNRPDVARITSNSTPNPIQNKLLPENHEFYSKLLQLCLQQCRRIKAHNLFDEKPKPVLQALRTAKVIHSKSLKFGVGLKGLL

Query:  GNAIVDLYVKCGNVDFAQKAFSWLEKKDVFA
        GNAIVDLYVKCGNVD+AQK FS LEKKDVF+
Subjt:  GNAIVDLYVKCGNVDFAQKAFSWLEKKDVFA

TrEMBL top hitse value%identityAlignment
A0A0A0K9P1 Uncharacterized protein6.6e-4373.64Show/hide
Query:  MHLNTFTCSSE-LPLFFNRPDVARITSNSTPNPIQNKLLPENHEFYSKLLQLCLQQCRRIKAHNLFDEKPKPVLQALRTAKVIHSKSLKFGVGLKGLLGN
        M LN F CSS  L  FFN P+VA I++NS PN + N+ L +N   +S+ LQ+CLQ C RI+AHNLFDEKPKPVLQAL TAKVIHSKSLK GVGLKGLLGN
Subjt:  MHLNTFTCSSE-LPLFFNRPDVARITSNSTPNPIQNKLLPENHEFYSKLLQLCLQQCRRIKAHNLFDEKPKPVLQALRTAKVIHSKSLKFGVGLKGLLGN

Query:  AIVDLYVKCGNVDFAQKAFSWLEKKDVFA
         IVDLYVKCGNVDFAQKAFS LEKKDVFA
Subjt:  AIVDLYVKCGNVDFAQKAFSWLEKKDVFA

A0A5A7TIQ6 Pentatricopeptide repeat-containing protein1.9e-3476.7Show/hide
Query:  SNSTPNPIQNKLLPENHEFYSKLLQLCLQQCRRIKAHNLFDEKPKPVLQALRTAKVIHSKSLKFGVGLKGLLGNAIVDLYVKCGNVDFAQKAFSWLEKKD
        SNS PN + N+ L +    +S+ LQ+CLQ CRRI+AHNLF+EKPK VLQAL TAKVIHSKSLK GVGLKGLLGN IVDLYVKCGNVDFAQKAFS LEKKD
Subjt:  SNSTPNPIQNKLLPENHEFYSKLLQLCLQQCRRIKAHNLFDEKPKPVLQALRTAKVIHSKSLKFGVGLKGLLGNAIVDLYVKCGNVDFAQKAFSWLEKKD

Query:  VFA
        VFA
Subjt:  VFA

A0A5D3D800 Pentatricopeptide repeat-containing protein1.9e-3476.7Show/hide
Query:  SNSTPNPIQNKLLPENHEFYSKLLQLCLQQCRRIKAHNLFDEKPKPVLQALRTAKVIHSKSLKFGVGLKGLLGNAIVDLYVKCGNVDFAQKAFSWLEKKD
        SNS PN + N+ L +    +S+ LQ+CLQ CRRI+AHNLF+EKPK VLQAL TAKVIHSKSLK GVGLKGLLGN IVDLYVKCGNVDFAQKAFS LEKKD
Subjt:  SNSTPNPIQNKLLPENHEFYSKLLQLCLQQCRRIKAHNLFDEKPKPVLQALRTAKVIHSKSLKFGVGLKGLLGNAIVDLYVKCGNVDFAQKAFSWLEKKD

Query:  VFA
        VFA
Subjt:  VFA

A0A6J1FBI8 pentatricopeptide repeat-containing protein At3g09040, mitochondrial1.5e-4776.34Show/hide
Query:  IKSMHLNTFTCSSELPLFFNRPDVARITSNSTPNPIQNKLLPENHEFYSKLLQLCLQQCRRIKAHNLFDEKPKPVLQALRTAKVIHSKSLKFGVGLKGLL
        +KSM LN+FTCSS LP F N P+VARI S ST + I N+ L E+H  +S+LLQLCL  CRRIKAHNLFDEKP+PVLQ LRTAKVIHSKSLK GVGL GLL
Subjt:  IKSMHLNTFTCSSELPLFFNRPDVARITSNSTPNPIQNKLLPENHEFYSKLLQLCLQQCRRIKAHNLFDEKPKPVLQALRTAKVIHSKSLKFGVGLKGLL

Query:  GNAIVDLYVKCGNVDFAQKAFSWLEKKDVFA
        GNAIVDLYVKCGNVD+AQK FS LEKKDVFA
Subjt:  GNAIVDLYVKCGNVDFAQKAFSWLEKKDVFA

A0A6J1IHS2 pentatricopeptide repeat-containing protein At3g09040, mitochondrial4.7e-4977.86Show/hide
Query:  IKSMHLNTFTCSSELPLFFNRPDVARITSNSTPNPIQNKLLPENHEFYSKLLQLCLQQCRRIKAHNLFDEKPKPVLQALRTAKVIHSKSLKFGVGLKGLL
        +KSM LN+FTCSS LP F N  +VARI S STP+ I N+LL E+H  +SK LQ+CLQ CRRIK HNLFDEKPKPVLQALRTAKVIHSKSLK GVGL GLL
Subjt:  IKSMHLNTFTCSSELPLFFNRPDVARITSNSTPNPIQNKLLPENHEFYSKLLQLCLQQCRRIKAHNLFDEKPKPVLQALRTAKVIHSKSLKFGVGLKGLL

Query:  GNAIVDLYVKCGNVDFAQKAFSWLEKKDVFA
        GNAIVDLYVKCGNVD+AQK FS LEKKDVFA
Subjt:  GNAIVDLYVKCGNVDFAQKAFSWLEKKDVFA

SwissProt top hitse value%identityAlignment
O65543 Pentatricopeptide repeat-containing protein At4g31070, mitochondrial1.5e-0443.14Show/hide
Query:  LRTAKVIHSKSLKFGVGLKGLLGNAIVDLYVKCGNVDFAQKAFSWLEKKDV
        L  A  +HS+ LK G     LLGNA++D+Y KCG++  A++ F  L +KD+
Subjt:  LRTAKVIHSKSLKFGVGLKGLLGNAIVDLYVKCGNVDFAQKAFSWLEKKDV

P0C898 Putative pentatricopeptide repeat-containing protein At3g151303.4e-0439.62Show/hide
Query:  LRTAKVIHSKSLKFGVGLKGLLGNAIVDLYVKCGNVDFAQKAFSWLEKKDVFA
        LR  K + + ++K   GL+  + N++VD+Y+KCG VD A+K F+ ++ KDV +
Subjt:  LRTAKVIHSKSLKFGVGLKGLLGNAIVDLYVKCGNVDFAQKAFSWLEKKDVFA

Q9LW32 Pentatricopeptide repeat-containing protein At3g26782, mitochondrial4.1e-0540.38Show/hide
Query:  ALRTAKVIHSKSLKFGVGLKGLLGNAIVDLYVKCGNVDFAQKAFSWLEKKDV
        ALR  K IH + ++ G+    ++G +I+D+Y KCG V+ A+KAF  ++ K+V
Subjt:  ALRTAKVIHSKSLKFGVGLKGLLGNAIVDLYVKCGNVDFAQKAFSWLEKKDV

Q9M9E2 Pentatricopeptide repeat-containing protein At1g15510, chloroplastic1.5e-0446.15Show/hide
Query:  ALRTAKVIHSKSLKFGVGLKGLLGNAIVDLYVKCGNVDFAQKAFSWLEKKDV
        AL   K IH+  L+ GVGL   L NA++D+YV+CG ++ A   F+  +KKDV
Subjt:  ALRTAKVIHSKSLKFGVGLKGLLGNAIVDLYVKCGNVDFAQKAFSWLEKKDV

Q9SS83 Pentatricopeptide repeat-containing protein At3g09040, mitochondrial6.4e-1947.25Show/hide
Query:  IQNKLLPENHEFYSKLLQLCLQQCRRIKAHNLFDEKPKPVLQALRTAKVIHSKSLKFGVGLKGLLGNAIVDLYVKCGNVDFAQKAFSWLEK
        I   +LP + + + +LL++CL QC+  K+  +FDE P+ +  ALR  K +HSKSL  G+  +G LGNAIVDLY KC  V +A+K F +LEK
Subjt:  IQNKLLPENHEFYSKLLQLCLQQCRRIKAHNLFDEKPKPVLQALRTAKVIHSKSLKFGVGLKGLLGNAIVDLYVKCGNVDFAQKAFSWLEK

Arabidopsis top hitse value%identityAlignment
AT1G15510.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.1e-0546.15Show/hide
Query:  ALRTAKVIHSKSLKFGVGLKGLLGNAIVDLYVKCGNVDFAQKAFSWLEKKDV
        AL   K IH+  L+ GVGL   L NA++D+YV+CG ++ A   F+  +KKDV
Subjt:  ALRTAKVIHSKSLKFGVGLKGLLGNAIVDLYVKCGNVDFAQKAFSWLEKKDV

AT1G19720.1 Pentatricopeptide repeat (PPR-like) superfamily protein2.4e-0536.36Show/hide
Query:  LQALRTAKVIHSKSLKFGVGLKGLLGNAIVDLYVKCGNVDFAQKAFSWLEKKDVF
        L+ +     +HS ++K G     L+GN++VD+Y KCG ++ A+K F  ++ KDV+
Subjt:  LQALRTAKVIHSKSLKFGVGLKGLLGNAIVDLYVKCGNVDFAQKAFSWLEKKDVF

AT3G09040.1 Pentatricopeptide repeat (PPR) superfamily protein4.6e-2047.25Show/hide
Query:  IQNKLLPENHEFYSKLLQLCLQQCRRIKAHNLFDEKPKPVLQALRTAKVIHSKSLKFGVGLKGLLGNAIVDLYVKCGNVDFAQKAFSWLEK
        I   +LP + + + +LL++CL QC+  K+  +FDE P+ +  ALR  K +HSKSL  G+  +G LGNAIVDLY KC  V +A+K F +LEK
Subjt:  IQNKLLPENHEFYSKLLQLCLQQCRRIKAHNLFDEKPKPVLQALRTAKVIHSKSLKFGVGLKGLLGNAIVDLYVKCGNVDFAQKAFSWLEK

AT3G26782.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.9e-0640.38Show/hide
Query:  ALRTAKVIHSKSLKFGVGLKGLLGNAIVDLYVKCGNVDFAQKAFSWLEKKDV
        ALR  K IH + ++ G+    ++G +I+D+Y KCG V+ A+KAF  ++ K+V
Subjt:  ALRTAKVIHSKSLKFGVGLKGLLGNAIVDLYVKCGNVDFAQKAFSWLEKKDV

AT4G31070.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.1e-0543.14Show/hide
Query:  LRTAKVIHSKSLKFGVGLKGLLGNAIVDLYVKCGNVDFAQKAFSWLEKKDV
        L  A  +HS+ LK G     LLGNA++D+Y KCG++  A++ F  L +KD+
Subjt:  LRTAKVIHSKSLKFGVGLKGLLGNAIVDLYVKCGNVDFAQKAFSWLEKKDV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATGTGGAAGCCGTATCAAGTCAATGCATCTCAATACCTTCACATGTTCTTCCGAACTCCCATTGTTCTTTAATCGTCCCGATGTTGCCAGAATCACGTCGAATTC
GACTCCAAATCCCATTCAGAACAAGCTTTTACCGGAAAATCACGAATTCTATTCGAAACTTCTGCAACTTTGCTTGCAACAGTGCAGGAGAATCAAAGCCCACAACCTAT
TCGACGAAAAGCCTAAGCCAGTTCTTCAAGCATTGAGAACCGCGAAGGTCATCCATTCGAAGAGTTTGAAGTTTGGAGTTGGGCTCAAAGGGTTGCTAGGCAATGCCATT
GTTGACCTTTATGTCAAATGCGGCAATGTGGACTTCGCTCAGAAGGCATTTTCCTGGCTTGAGAAAAAGGATGTATTTGCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCATGTGGAAGCCGTATCAAGTCAATGCATCTCAATACCTTCACATGTTCTTCCGAACTCCCATTGTTCTTTAATCGTCCCGATGTTGCCAGAATCACGTCGAATTC
GACTCCAAATCCCATTCAGAACAAGCTTTTACCGGAAAATCACGAATTCTATTCGAAACTTCTGCAACTTTGCTTGCAACAGTGCAGGAGAATCAAAGCCCACAACCTAT
TCGACGAAAAGCCTAAGCCAGTTCTTCAAGCATTGAGAACCGCGAAGGTCATCCATTCGAAGAGTTTGAAGTTTGGAGTTGGGCTCAAAGGGTTGCTAGGCAATGCCATT
GTTGACCTTTATGTCAAATGCGGCAATGTGGACTTCGCTCAGAAGGCATTTTCCTGGCTTGAGAAAAAGGATGTATTTGCCTGA
Protein sequenceShow/hide protein sequence
MSCGSRIKSMHLNTFTCSSELPLFFNRPDVARITSNSTPNPIQNKLLPENHEFYSKLLQLCLQQCRRIKAHNLFDEKPKPVLQALRTAKVIHSKSLKFGVGLKGLLGNAI
VDLYVKCGNVDFAQKAFSWLEKKDVFA