; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0038415 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038415
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr2:16934621..16936949
RNA-Seq ExpressionLag0038415
SyntenyLag0038415
Gene Ontology termsGO:0034641 - cellular nitrogen compound metabolic process (biological process)
GO:0071704 - organic substance metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045111.1 putative glutathione S-transferase isoform X1 [Cucumis melo var. makuwa]6.9e-3047.7Show/hide
Query:  NAKSAVPFM-ATPESSLTGATVDSSNVSSQIFNP--------DNIISSWLVGSMSDEILQQMLNCTTAKEIWTCLNQIFTTRNLAQMMKIKTKLQTIQKV
        NA+  + ++  TP  SL  A   SS     I NP        D +ISSWL+GSM ++IL QML+CT+AK+IW  L  I+++R LA+ M+ K KL  ++K 
Subjt:  NAKSAVPFM-ATPESSLTGATVDSSNVSSQIFNP--------DNIISSWLVGSMSDEILQQMLNCTTAKEIWTCLNQIFTTRNLAQMMKIKTKLQTIQKV

Query:  GMSLQEYFSKIQQYVDALAAVGKLVEVEDHILFILSDLGSEYESMVSIILAKVGPQSVHEVMVMLLTQENWIGS
         +SL+EYF KIQQ VDALA++ K +  +DHIL+IL+ LG+EY+SM+S+I A+    SV +VM +LLTQE+ I S
Subjt:  GMSLQEYFSKIQQYVDALAAVGKLVEVEDHILFILSDLGSEYESMVSIILAKVGPQSVHEVMVMLLTQENWIGS

KAA0046195.1 putative Ty1-copia-like retrotransposon [Cucumis melo var. makuwa]1.4e-2745.35Show/hide
Query:  AKSAVPFMATPESSLTGATVDSSNVSSQIFN--------PDNIISSWLVGSMSDEILQQMLNCTTAKEIWTCLNQIFTTRNLAQMMKIKTKLQTIQKVGM
        A+ A  ++  P +  + A   SS     + N         D +ISSWL+GSMS++IL QML+ T+AK+IW  L  I+++R LA+ M+ K KL  ++K  M
Subjt:  AKSAVPFMATPESSLTGATVDSSNVSSQIFN--------PDNIISSWLVGSMSDEILQQMLNCTTAKEIWTCLNQIFTTRNLAQMMKIKTKLQTIQKVGM

Query:  SLQEYFSKIQQYVDALAAVGKLVEVEDHILFILSDLGSEYESMVSIILAKVGPQSVHEVMVMLLTQENWIGS
        SL+EYF KIQQ VDALA++ K +  +DHIL+IL+ LG+EY+S++SII A+    SV + M +LLTQE+ I S
Subjt:  SLQEYFSKIQQYVDALAAVGKLVEVEDHILFILSDLGSEYESMVSIILAKVGPQSVHEVMVMLLTQENWIGS

KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]8.1e-3150.6Show/hide
Query:  NFRNAKSAVP--FMATPESSLTGATVDSSNVSSQIFNPDNIISSWLVGSMSDEILQQMLNCTTAKEIWTCLNQIFTTRNLAQMMKIKTKLQTIQKVGMSL
        NF  ++S  P  ++ + ESS   AT   +         D +ISSWL+GSMS+EIL QML+C +AKEIW  L  IF++R LAQ M+ K KL  I+K  M L
Subjt:  NFRNAKSAVP--FMATPESSLTGATVDSSNVSSQIFNPDNIISSWLVGSMSDEILQQMLNCTTAKEIWTCLNQIFTTRNLAQMMKIKTKLQTIQKVGMSL

Query:  QEYFSKIQQYVDALAAVGKLVEVEDHILFILSDLGSEYESMVSIILAKVGPQSVHEVMVMLLTQEN
        +EYF KI Q VDALA++ K V  +DHIL+IL+ LGS+Y+SM+S+I A+    SV EVM +LLTQE+
Subjt:  QEYFSKIQQYVDALAAVGKLVEVEDHILFILSDLGSEYESMVSIILAKVGPQSVHEVMVMLLTQEN

KAA0053143.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]7.6e-2950.63Show/hide
Query:  PESSLTGATVDSSNVSSQIFNPD--------NIISSWLVGSMSDEILQQMLNCTTAKEIWTCLNQIFTTRNLAQMMKIKTKLQTIQKVGMSLQEYFSKIQ
        P S    +T  SS  +++  NP+         +IS WL+GSMS+EIL QM++C +AKEIW  L  IF++R LAQ M+ K KL  I+K  MSL+EYF KIQ
Subjt:  PESSLTGATVDSSNVSSQIFNPD--------NIISSWLVGSMSDEILQQMLNCTTAKEIWTCLNQIFTTRNLAQMMKIKTKLQTIQKVGMSLQEYFSKIQ

Query:  QYVDALAAVGKLVEVEDHILFILSDLGSEYESMVSIILAKVGPQSVHEVMVMLLTQEN
        Q VDALA++ K V  +DHIL+IL  LG +Y+SM+SII A+    S+ EVM +LLTQE+
Subjt:  QYVDALAAVGKLVEVEDHILFILSDLGSEYESMVSIILAKVGPQSVHEVMVMLLTQEN

TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]8.1e-3150.6Show/hide
Query:  NFRNAKSAVP--FMATPESSLTGATVDSSNVSSQIFNPDNIISSWLVGSMSDEILQQMLNCTTAKEIWTCLNQIFTTRNLAQMMKIKTKLQTIQKVGMSL
        NF  ++S  P  ++ + ESS   AT   +         D +ISSWL+GSMS+EIL QML+C +AKEIW  L  IF++R LAQ M+ K KL  I+K  M L
Subjt:  NFRNAKSAVP--FMATPESSLTGATVDSSNVSSQIFNPDNIISSWLVGSMSDEILQQMLNCTTAKEIWTCLNQIFTTRNLAQMMKIKTKLQTIQKVGMSL

Query:  QEYFSKIQQYVDALAAVGKLVEVEDHILFILSDLGSEYESMVSIILAKVGPQSVHEVMVMLLTQEN
        +EYF KI Q VDALA++ K V  +DHIL+IL+ LGS+Y+SM+S+I A+    SV EVM +LLTQE+
Subjt:  QEYFSKIQQYVDALAAVGKLVEVEDHILFILSDLGSEYESMVSIILAKVGPQSVHEVMVMLLTQEN

TrEMBL top hitse value%identityAlignment
A0A5A7TUB3 Putative glutathione S-transferase isoform X13.3e-3047.7Show/hide
Query:  NAKSAVPFM-ATPESSLTGATVDSSNVSSQIFNP--------DNIISSWLVGSMSDEILQQMLNCTTAKEIWTCLNQIFTTRNLAQMMKIKTKLQTIQKV
        NA+  + ++  TP  SL  A   SS     I NP        D +ISSWL+GSM ++IL QML+CT+AK+IW  L  I+++R LA+ M+ K KL  ++K 
Subjt:  NAKSAVPFM-ATPESSLTGATVDSSNVSSQIFNP--------DNIISSWLVGSMSDEILQQMLNCTTAKEIWTCLNQIFTTRNLAQMMKIKTKLQTIQKV

Query:  GMSLQEYFSKIQQYVDALAAVGKLVEVEDHILFILSDLGSEYESMVSIILAKVGPQSVHEVMVMLLTQENWIGS
         +SL+EYF KIQQ VDALA++ K +  +DHIL+IL+ LG+EY+SM+S+I A+    SV +VM +LLTQE+ I S
Subjt:  GMSLQEYFSKIQQYVDALAAVGKLVEVEDHILFILSDLGSEYESMVSIILAKVGPQSVHEVMVMLLTQENWIGS

A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-943.9e-3150.6Show/hide
Query:  NFRNAKSAVP--FMATPESSLTGATVDSSNVSSQIFNPDNIISSWLVGSMSDEILQQMLNCTTAKEIWTCLNQIFTTRNLAQMMKIKTKLQTIQKVGMSL
        NF  ++S  P  ++ + ESS   AT   +         D +ISSWL+GSMS+EIL QML+C +AKEIW  L  IF++R LAQ M+ K KL  I+K  M L
Subjt:  NFRNAKSAVP--FMATPESSLTGATVDSSNVSSQIFNPDNIISSWLVGSMSDEILQQMLNCTTAKEIWTCLNQIFTTRNLAQMMKIKTKLQTIQKVGMSL

Query:  QEYFSKIQQYVDALAAVGKLVEVEDHILFILSDLGSEYESMVSIILAKVGPQSVHEVMVMLLTQEN
        +EYF KI Q VDALA++ K V  +DHIL+IL+ LGS+Y+SM+S+I A+    SV EVM +LLTQE+
Subjt:  QEYFSKIQQYVDALAAVGKLVEVEDHILFILSDLGSEYESMVSIILAKVGPQSVHEVMVMLLTQEN

A0A5A7UB21 Keratin, type II cytoskeletal 1-like3.7e-2950.63Show/hide
Query:  PESSLTGATVDSSNVSSQIFNPD--------NIISSWLVGSMSDEILQQMLNCTTAKEIWTCLNQIFTTRNLAQMMKIKTKLQTIQKVGMSLQEYFSKIQ
        P S    +T  SS  +++  NP+         +IS WL+GSMS+EIL QM++C +AKEIW  L  IF++R LAQ M+ K KL  I+K  MSL+EYF KIQ
Subjt:  PESSLTGATVDSSNVSSQIFNPD--------NIISSWLVGSMSDEILQQMLNCTTAKEIWTCLNQIFTTRNLAQMMKIKTKLQTIQKVGMSLQEYFSKIQ

Query:  QYVDALAAVGKLVEVEDHILFILSDLGSEYESMVSIILAKVGPQSVHEVMVMLLTQEN
        Q VDALA++ K V  +DHIL+IL  LG +Y+SM+SII A+    S+ EVM +LLTQE+
Subjt:  QYVDALAAVGKLVEVEDHILFILSDLGSEYESMVSIILAKVGPQSVHEVMVMLLTQEN

A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-943.9e-3150.6Show/hide
Query:  NFRNAKSAVP--FMATPESSLTGATVDSSNVSSQIFNPDNIISSWLVGSMSDEILQQMLNCTTAKEIWTCLNQIFTTRNLAQMMKIKTKLQTIQKVGMSL
        NF  ++S  P  ++ + ESS   AT   +         D +ISSWL+GSMS+EIL QML+C +AKEIW  L  IF++R LAQ M+ K KL  I+K  M L
Subjt:  NFRNAKSAVP--FMATPESSLTGATVDSSNVSSQIFNPDNIISSWLVGSMSDEILQQMLNCTTAKEIWTCLNQIFTTRNLAQMMKIKTKLQTIQKVGMSL

Query:  QEYFSKIQQYVDALAAVGKLVEVEDHILFILSDLGSEYESMVSIILAKVGPQSVHEVMVMLLTQEN
        +EYF KI Q VDALA++ K V  +DHIL+IL+ LGS+Y+SM+S+I A+    SV EVM +LLTQE+
Subjt:  QEYFSKIQQYVDALAAVGKLVEVEDHILFILSDLGSEYESMVSIILAKVGPQSVHEVMVMLLTQEN

A0A5D3CRZ7 Putative Ty1-copia-like retrotransposon6.9e-2845.35Show/hide
Query:  AKSAVPFMATPESSLTGATVDSSNVSSQIFN--------PDNIISSWLVGSMSDEILQQMLNCTTAKEIWTCLNQIFTTRNLAQMMKIKTKLQTIQKVGM
        A+ A  ++  P +  + A   SS     + N         D +ISSWL+GSMS++IL QML+ T+AK+IW  L  I+++R LA+ M+ K KL  ++K  M
Subjt:  AKSAVPFMATPESSLTGATVDSSNVSSQIFN--------PDNIISSWLVGSMSDEILQQMLNCTTAKEIWTCLNQIFTTRNLAQMMKIKTKLQTIQKVGM

Query:  SLQEYFSKIQQYVDALAAVGKLVEVEDHILFILSDLGSEYESMVSIILAKVGPQSVHEVMVMLLTQENWIGS
        SL+EYF KIQQ VDALA++ K +  +DHIL+IL+ LG+EY+S++SII A+    SV + M +LLTQE+ I S
Subjt:  SLQEYFSKIQQYVDALAAVGKLVEVEDHILFILSDLGSEYESMVSIILAKVGPQSVHEVMVMLLTQENWIGS

SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.1e-0626.15Show/hide
Query:  DNIISSWLVGSMSDEILQQMLNCTTAKEIWTCLNQIFTTRNLAQMMKIKTKLQTIQKVGMSLQEYFSKIQQYVDALAAVGKLVEVEDHILFILSDLGSEY
        D +I S ++G++S  +   +   TTA +IW  L +I+   +   + +++T+L+   K   ++ +Y   +    D LA +GK ++ ++ +  +L +L  EY
Subjt:  DNIISSWLVGSMSDEILQQMLNCTTAKEIWTCLNQIFTTRNLAQMMKIKTKLQTIQKVGMSLQEYFSKIQQYVDALAAVGKLVEVEDHILFILSDLGSEY

Query:  ESMVSIILAKVGPQSVHEVMVMLLTQENWI
        + ++  I AK  P ++ E+   LL  E+ I
Subjt:  ESMVSIILAKVGPQSVHEVMVMLLTQENWI

Arabidopsis top hitse value%identityAlignment
AT1G21280.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).5.3e-0423.47Show/hide
Query:  TPESSLTGATVDSSNVSSQIFNP----DNIISSWLVGSMSDEILQQMLNCTTAKEIWTCLNQIFTTRNLAQMMKIKTKLQTIQKVGMSLQEYFSKIQQ
        T +      T+   +  S ++ P    + ++  WL+ SM+D++L+ ++   TA ++W  L ++F      ++ +++ +L T+++ G S++EYF K+ +
Subjt:  TPESSLTGATVDSSNVSSQIFNP----DNIISSWLVGSMSDEILQQMLNCTTAKEIWTCLNQIFTTRNLAQMMKIKTKLQTIQKVGMSLQEYFSKIQQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACTTTCATGCTCAGCCTTGTGTCGCCTGGGGAACTGCCTCCCTTCGGAAGGTTTGTTGCATGGAATCGATATCAAGGCAAACTTCAGAAATGCGAAGAGTGCAGT
TCCCTTCATGGCAACACCCGAGAGCTCTCTGACTGGTGCAACAGTTGATTCTTCAAATGTTTCATCTCAGATCTTCAACCCTGATAATATTATCTCTTCATGGCTTGTGG
GCTCCATGTCTGACGAGATTCTTCAGCAAATGTTGAACTGTACGACCGCCAAAGAGATATGGACCTGCTTAAATCAGATCTTCACTACTCGCAACTTGGCCCAGATGATG
AAGATAAAAACTAAATTACAGACAATTCAAAAGGTTGGTATGTCTTTACAAGAGTACTTCTCCAAAATTCAACAATATGTTGACGCCTTGGCTGCGGTGGGTAAGCTTGT
AGAGGTTGAAGATCACATACTTTTTATTTTGTCTGATCTCGGGTCTGAGTATGAGTCGATGGTCTCTATCATTTTGGCCAAAGTTGGTCCTCAATCGGTCCATGAGGTGA
TGGTCATGCTTCTCACCCAAGAGAACTGGATTGGGAGCAATTTTCTCAGAGTCCTGAACATGGTAATAGAGGTGGTCGTGGTGGTCGTTCTGGTTTTGGCTCTAATCGTA
GTGGTCGCTAATGGGGCCCAGACTTGTCGAAGGGGAAACGACAAGGAGGCTGCTGTTTGGAGGATTTCCAACTTGGGAAAGCTGGAATCTCCCTTGGAAGCTTCTTCTCT
TCTCTTCCCTTCTTTTATTCTTCTTTCTTCTAGTGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGACTTTCATGCTCAGCCTTGTGTCGCCTGGGGAACTGCCTCCCTTCGGAAGGTTTGTTGCATGGAATCGATATCAAGGCAAACTTCAGAAATGCGAAGAGTGCAGT
TCCCTTCATGGCAACACCCGAGAGCTCTCTGACTGGTGCAACAGTTGATTCTTCAAATGTTTCATCTCAGATCTTCAACCCTGATAATATTATCTCTTCATGGCTTGTGG
GCTCCATGTCTGACGAGATTCTTCAGCAAATGTTGAACTGTACGACCGCCAAAGAGATATGGACCTGCTTAAATCAGATCTTCACTACTCGCAACTTGGCCCAGATGATG
AAGATAAAAACTAAATTACAGACAATTCAAAAGGTTGGTATGTCTTTACAAGAGTACTTCTCCAAAATTCAACAATATGTTGACGCCTTGGCTGCGGTGGGTAAGCTTGT
AGAGGTTGAAGATCACATACTTTTTATTTTGTCTGATCTCGGGTCTGAGTATGAGTCGATGGTCTCTATCATTTTGGCCAAAGTTGGTCCTCAATCGGTCCATGAGGTGA
TGGTCATGCTTCTCACCCAAGAGAACTGGATTGGGAGCAATTTTCTCAGAGTCCTGAACATGGTAATAGAGGTGGTCGTGGTGGTCGTTCTGGTTTTGGCTCTAATCGTA
GTGGTCGCTAATGGGGCCCAGACTTGTCGAAGGGGAAACGACAAGGAGGCTGCTGTTTGGAGGATTTCCAACTTGGGAAAGCTGGAATCTCCCTTGGAAGCTTCTTCTCT
TCTCTTCCCTTCTTTTATTCTTCTTTCTTCTAGTGTTTAG
Protein sequenceShow/hide protein sequence
MRLSCSALCRLGNCLPSEGLLHGIDIKANFRNAKSAVPFMATPESSLTGATVDSSNVSSQIFNPDNIISSWLVGSMSDEILQQMLNCTTAKEIWTCLNQIFTTRNLAQMM
KIKTKLQTIQKVGMSLQEYFSKIQQYVDALAAVGKLVEVEDHILFILSDLGSEYESMVSIILAKVGPQSVHEVMVMLLTQENWIGSNFLRVLNMVIEVVVVVVLVLALIV
VVANGAQTCRRGNDKEAAVWRISNLGKLESPLEASSLLFPSFILLSSSV