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Lag0038426 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038426
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr2:17156253..17156612
RNA-Seq ExpressionLag0038426
SyntenyLag0038426
Gene Ontology termsGO:0044237 - cellular metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060627.1 Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa]1.6e-1546.39Show/hide
Query:  NLSSPLLNQLLNQITSIKLDRGNFLLWKNLALPSLQSYRLEGHLTGLKPCPPKHVRVAVADPSPSSGAGGVSSRAEASEASATVTADDINPSYEAWV
        N S+P LNQLLNQ++S+KLDRGN+LLWK LALP ++SY+ EGHLTG  PCPPK +   + +          ++   +S ++AT T   +NP ++ W+
Subjt:  NLSSPLLNQLLNQITSIKLDRGNFLLWKNLALPSLQSYRLEGHLTGLKPCPPKHVRVAVADPSPSSGAGGVSSRAEASEASATVTADDINPSYEAWV

KAA0067279.1 uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa]4.0e-1447.42Show/hide
Query:  NLSSPLLNQLLNQITSIKLDRGNFLLWKNLALPSLQSYRLEGHLTGLKPCPPKHVRVAVADPSPSSGAGGVSSRAEASEASATVTADDINPSYEAWV
        + ++PLLNQ+LNQ+T+IKLDRGN+LLWK LALP L+SY+L  HL G  PC PK + +            G  S+  +S ++A VT   +NP YE W+
Subjt:  NLSSPLLNQLLNQITSIKLDRGNFLLWKNLALPSLQSYRLEGHLTGLKPCPPKHVRVAVADPSPSSGAGGVSSRAEASEASATVTADDINPSYEAWV

TYK02246.1 uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa]1.6e-1546.39Show/hide
Query:  NLSSPLLNQLLNQITSIKLDRGNFLLWKNLALPSLQSYRLEGHLTGLKPCPPKHVRVAVADPSPSSGAGGVSSRAEASEASATVTADDINPSYEAWV
        N S+P LNQLLNQ++S+KLDRGN+LLWK LALP ++SY+ EGHLTG  PCPPK +   + +          ++   +S ++AT T   +NP ++ W+
Subjt:  NLSSPLLNQLLNQITSIKLDRGNFLLWKNLALPSLQSYRLEGHLTGLKPCPPKHVRVAVADPSPSSGAGGVSSRAEASEASATVTADDINPSYEAWV

XP_016901223.1 PREDICTED: uncharacterized protein LOC107991202 [Cucumis melo]1.8e-1444.66Show/hide
Query:  SSGNNLSSPLLNQLLNQITSIKLDRGNFLLWKNLALPSLQSYRLEGHLTGLKPCPPKHVRVAVADPSPSSGAGGVSSRAEASE--ASATVTADDINPSYE
        SS  N S+P LNQLLNQ++S+KLDR N+LLWK LALP ++SY+ EG+LTG  PCPPK +    A+         +   AEA++  +S ++    +NP ++
Subjt:  SSGNNLSSPLLNQLLNQITSIKLDRGNFLLWKNLALPSLQSYRLEGHLTGLKPCPPKHVRVAVADPSPSSGAGGVSSRAEASE--ASATVTADDINPSYE

Query:  AWV
         W+
Subjt:  AWV

XP_022151683.1 uncharacterized protein LOC111019598 [Momordica charantia]1.1e-1651.43Show/hide
Query:  ALSSGNNLSSPLLNQLLNQITSIKLDRGNFLLWKNLALPSLQSYRLEGHLTGLKPCPPKHVRVAVADPSPSSGAGGVSSRAEASEASATVTADDINPSYE
        A+ SG   +SP LNQLLNQITSIK+DRGNFLLW+NLALP L+SY+L  +LTG KPCPP H+   V   +P++  G  SS++  +          +NP+YE
Subjt:  ALSSGNNLSSPLLNQLLNQITSIKLDRGNFLLWKNLALPSLQSYRLEGHLTGLKPCPPKHVRVAVADPSPSSGAGGVSSRAEASEASATVTADDINPSYE

Query:  AWVAL
        AW+ +
Subjt:  AWVAL

TrEMBL top hitse value%identityAlignment
A0A1S4DZ26 uncharacterized protein LOC1079912028.7e-1544.66Show/hide
Query:  SSGNNLSSPLLNQLLNQITSIKLDRGNFLLWKNLALPSLQSYRLEGHLTGLKPCPPKHVRVAVADPSPSSGAGGVSSRAEASE--ASATVTADDINPSYE
        SS  N S+P LNQLLNQ++S+KLDR N+LLWK LALP ++SY+ EG+LTG  PCPPK +    A+         +   AEA++  +S ++    +NP ++
Subjt:  SSGNNLSSPLLNQLLNQITSIKLDRGNFLLWKNLALPSLQSYRLEGHLTGLKPCPPKHVRVAVADPSPSSGAGGVSSRAEASE--ASATVTADDINPSYE

Query:  AWV
         W+
Subjt:  AWV

A0A5A7V1E0 Reverse transcriptase, RNA-dependent DNA polymerase7.9e-1646.39Show/hide
Query:  NLSSPLLNQLLNQITSIKLDRGNFLLWKNLALPSLQSYRLEGHLTGLKPCPPKHVRVAVADPSPSSGAGGVSSRAEASEASATVTADDINPSYEAWV
        N S+P LNQLLNQ++S+KLDRGN+LLWK LALP ++SY+ EGHLTG  PCPPK +   + +          ++   +S ++AT T   +NP ++ W+
Subjt:  NLSSPLLNQLLNQITSIKLDRGNFLLWKNLALPSLQSYRLEGHLTGLKPCPPKHVRVAVADPSPSSGAGGVSSRAEASEASATVTADDINPSYEAWV

A0A5A7VPY0 Uncharacterized protein1.9e-1447.42Show/hide
Query:  NLSSPLLNQLLNQITSIKLDRGNFLLWKNLALPSLQSYRLEGHLTGLKPCPPKHVRVAVADPSPSSGAGGVSSRAEASEASATVTADDINPSYEAWV
        + ++PLLNQ+LNQ+T+IKLDRGN+LLWK LALP L+SY+L  HL G  PC PK + +            G  S+  +S ++A VT   +NP YE W+
Subjt:  NLSSPLLNQLLNQITSIKLDRGNFLLWKNLALPSLQSYRLEGHLTGLKPCPPKHVRVAVADPSPSSGAGGVSSRAEASEASATVTADDINPSYEAWV

A0A5D3BVJ1 Uncharacterized protein7.9e-1646.39Show/hide
Query:  NLSSPLLNQLLNQITSIKLDRGNFLLWKNLALPSLQSYRLEGHLTGLKPCPPKHVRVAVADPSPSSGAGGVSSRAEASEASATVTADDINPSYEAWV
        N S+P LNQLLNQ++S+KLDRGN+LLWK LALP ++SY+ EGHLTG  PCPPK +   + +          ++   +S ++AT T   +NP ++ W+
Subjt:  NLSSPLLNQLLNQITSIKLDRGNFLLWKNLALPSLQSYRLEGHLTGLKPCPPKHVRVAVADPSPSSGAGGVSSRAEASEASATVTADDINPSYEAWV

A0A6J1DCW4 uncharacterized protein LOC1110195985.4e-1751.43Show/hide
Query:  ALSSGNNLSSPLLNQLLNQITSIKLDRGNFLLWKNLALPSLQSYRLEGHLTGLKPCPPKHVRVAVADPSPSSGAGGVSSRAEASEASATVTADDINPSYE
        A+ SG   +SP LNQLLNQITSIK+DRGNFLLW+NLALP L+SY+L  +LTG KPCPP H+   V   +P++  G  SS++  +          +NP+YE
Subjt:  ALSSGNNLSSPLLNQLLNQITSIKLDRGNFLLWKNLALPSLQSYRLEGHLTGLKPCPPKHVRVAVADPSPSSGAGGVSSRAEASEASATVTADDINPSYE

Query:  AWVAL
        AW+ +
Subjt:  AWVAL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCAGCGTCAATTTCTCCGGTAATTCAGCTCTTTCTTCCGGTAACAATCTCAGCAGTCCACTGTTAAATCAACTGTTGAACCAGATCACCTCCATAAAACTCGATAG
AGGTAATTTTCTTCTTTGGAAAAACTTGGCACTACCGAGTCTTCAAAGTTATCGACTGGAAGGGCATTTAACTGGACTGAAACCTTGCCCTCCCAAGCATGTTCGAGTTG
CTGTAGCTGATCCTTCTCCGTCGTCGGGAGCTGGAGGAGTGAGCTCGAGAGCAGAGGCAAGTGAAGCGTCTGCAACAGTCACTGCTGATGACATTAACCCATCATATGAA
GCATGGGTAGCATTGACCAGTTGTTGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACCAGCGTCAATTTCTCCGGTAATTCAGCTCTTTCTTCCGGTAACAATCTCAGCAGTCCACTGTTAAATCAACTGTTGAACCAGATCACCTCCATAAAACTCGATAG
AGGTAATTTTCTTCTTTGGAAAAACTTGGCACTACCGAGTCTTCAAAGTTATCGACTGGAAGGGCATTTAACTGGACTGAAACCTTGCCCTCCCAAGCATGTTCGAGTTG
CTGTAGCTGATCCTTCTCCGTCGTCGGGAGCTGGAGGAGTGAGCTCGAGAGCAGAGGCAAGTGAAGCGTCTGCAACAGTCACTGCTGATGACATTAACCCATCATATGAA
GCATGGGTAGCATTGACCAGTTGTTGTTAG
Protein sequenceShow/hide protein sequence
MTSVNFSGNSALSSGNNLSSPLLNQLLNQITSIKLDRGNFLLWKNLALPSLQSYRLEGHLTGLKPCPPKHVRVAVADPSPSSGAGGVSSRAEASEASATVTADDINPSYE
AWVALTSCC