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Lag0038431 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038431
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr2:17314348..17315819
RNA-Seq ExpressionLag0038431
SyntenyLag0038431
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAT10513.1 Os10g0362600 [Oryza sativa Japonica Group]2.9e-1341.57Show/hide
Query:  ALGNSIGRFEEVEADEEGQMGGESLRVEIQVDVREPLKRGTHVKTGTKGETKWIPITYEKLPDFCYFCGKLGHVFQECREEGAEGEIEL
        A+G  +G F  ++ +E+G   G+ LR++I++D+R+PL RG  +  G      W P+ YE LPDFCY CG +GH  + C ++ AEGE  L
Subjt:  ALGNSIGRFEEVEADEEGQMGGESLRVEIQVDVREPLKRGTHVKTGTKGETKWIPITYEKLPDFCYFCGKLGHVFQECREEGAEGEIEL

CAD6257659.1 unnamed protein product [Miscanthus lutarioriparius]2.2e-1343.18Show/hide
Query:  AEALGNSIGRFEEVEADEEGQMGGESLRVEIQVDVREPLKRGTHVKTGTKGETKWIPITYEKLPDFCYFCGKLGHVFQECREEGAEGE
        A A+G+ +G F EV+AD      G  LR+++++D+R+PL RG     G     +W PITYE  PDFCY CG +GHV + C ++  +GE
Subjt:  AEALGNSIGRFEEVEADEEGQMGGESLRVEIQVDVREPLKRGTHVKTGTKGETKWIPITYEKLPDFCYFCGKLGHVFQECREEGAEGE

KAA0046998.1 reverse transcriptase [Cucumis melo var. makuwa]5.3e-1548.86Show/hide
Query:  PLKRGTHVKTGTKGETKWIPITYEKLPDFCYFCGKLGHVFQECREEGAEGEIELSYGVGMRETQTSKGVYKHPKAQFRFQSFRGRGRG
        P   GT  K G   + KWIP++YEKLPDFCY CG++GHV QEC+E G +GE    +GV +R++QTS+ + K  + + R Q    RGRG
Subjt:  PLKRGTHVKTGTKGETKWIPITYEKLPDFCYFCGKLGHVFQECREEGAEGEIELSYGVGMRETQTSKGVYKHPKAQFRFQSFRGRGRG

KAE8782072.1 hypothetical protein D1007_44590 [Hordeum vulgare]4.9e-1340.21Show/hide
Query:  EALGNSIGRFEEVEADEEGQMGGESLRVEIQVDVREPLKRGTHVKTGTKGETKWIPITYEKLPDFCYFCGKLGHVFQECREEGAEGEIELSYGVGMR
        E +G  +G F +VE  E+G   GESLR+++++D+ +PL RGT + TG     +W P  YE L +FCY CG +GH  + C     +GE E  +G  +R
Subjt:  EALGNSIGRFEEVEADEEGQMGGESLRVEIQVDVREPLKRGTHVKTGTKGETKWIPITYEKLPDFCYFCGKLGHVFQECREEGAEGEIELSYGVGMR

PON92154.1 Zinc knuckle CX2CX4HX4C [Trema orientale]6.2e-1644.12Show/hide
Query:  AEALGNSIGRFEEVEADEEGQMGGESLRVEIQVDVREPLKRGTHVKTGTKGETKWIPITYEKLPDFCYFCGKLGHVFQECREEGAE----GEIELSYGVG
        A+ LGN  GRF EVE D+ G   G  L V + VD+ +PL+RG  V+ G+ G T W+   Y +LPDFC++CGK+GH   +C EE  +    G+ E +YG  
Subjt:  AEALGNSIGRFEEVEADEEGQMGGESLRVEIQVDVREPLKRGTHVKTGTKGETKWIPITYEKLPDFCYFCGKLGHVFQECREEGAE----GEIELSYGVG

Query:  MR
        +R
Subjt:  MR

TrEMBL top hitse value%identityAlignment
A0A0A0LNB5 CCHC-type domain-containing protein2.8e-1453.66Show/hide
Query:  KYAEALGNSIGRFEEVEADEEGQMGGESLRVEIQVDVREPLKRGTHVKTGTKGETKWIPITYEKLPDFCYFCGKLGHVFQEC
        KY  AL NSI  FEEVE  E  +  GE L+V  ++DV++ L   T++K G   + K IP+TYEKL DFCY CG LGHV QEC
Subjt:  KYAEALGNSIGRFEEVEADEEGQMGGESLRVEIQVDVREPLKRGTHVKTGTKGETKWIPITYEKLPDFCYFCGKLGHVFQEC

A0A0P0XTA0 Os10g0362600 protein1.4e-1341.57Show/hide
Query:  ALGNSIGRFEEVEADEEGQMGGESLRVEIQVDVREPLKRGTHVKTGTKGETKWIPITYEKLPDFCYFCGKLGHVFQECREEGAEGEIEL
        A+G  +G F  ++ +E+G   G+ LR++I++D+R+PL RG  +  G      W P+ YE LPDFCY CG +GH  + C ++ AEGE  L
Subjt:  ALGNSIGRFEEVEADEEGQMGGESLRVEIQVDVREPLKRGTHVKTGTKGETKWIPITYEKLPDFCYFCGKLGHVFQECREEGAEGEIEL

A0A2P5F2Z2 Zinc knuckle CX2CX4HX4C3.0e-1644.12Show/hide
Query:  AEALGNSIGRFEEVEADEEGQMGGESLRVEIQVDVREPLKRGTHVKTGTKGETKWIPITYEKLPDFCYFCGKLGHVFQECREEGAE----GEIELSYGVG
        A+ LGN  GRF EVE D+ G   G  L V + VD+ +PL+RG  V+ G+ G T W+   Y +LPDFC++CGK+GH   +C EE  +    G+ E +YG  
Subjt:  AEALGNSIGRFEEVEADEEGQMGGESLRVEIQVDVREPLKRGTHVKTGTKGETKWIPITYEKLPDFCYFCGKLGHVFQECREEGAE----GEIELSYGVG

Query:  MR
        +R
Subjt:  MR

A0A5D3C0K2 Reverse transcriptase2.6e-1548.86Show/hide
Query:  PLKRGTHVKTGTKGETKWIPITYEKLPDFCYFCGKLGHVFQECREEGAEGEIELSYGVGMRETQTSKGVYKHPKAQFRFQSFRGRGRG
        P   GT  K G   + KWIP++YEKLPDFCY CG++GHV QEC+E G +GE    +GV +R++QTS+ + K  + + R Q    RGRG
Subjt:  PLKRGTHVKTGTKGETKWIPITYEKLPDFCYFCGKLGHVFQECREEGAEGEIELSYGVGMRETQTSKGVYKHPKAQFRFQSFRGRGRG

Q2QQV8 Retrotransposon protein, putative, unclassified7.0e-1334.75Show/hide
Query:  ALGNSIGRFEEVEADEEGQMGGESLRVEIQVDVREPLKRGTHVKTGTKGETKWIPITYEKLPDFCYFCGKLGHVFQECREEGAEGEIELSYGVGMR---E
        A+G  +G F  ++ +E+G   G+ LR++I++D+R+PL RG  +  G      W P+ YE LPDFCY CG +GH  + C ++ AEGE  L +   +R   E
Subjt:  ALGNSIGRFEEVEADEEGQMGGESLRVEIQVDVREPLKRGTHVKTGTKGETKWIPITYEKLPDFCYFCGKLGHVFQECREEGAEGEIELSYGVGMR---E

Query:  TQTSKGVYKHPKAQFRFQSFRGRGRGRFYSTGEEFQSKSWR
         +  +G      +  RFQ  R  G     S+ +   + SWR
Subjt:  TQTSKGVYKHPKAQFRFQSFRGRGRGRFYSTGEEFQSKSWR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGATGAGGGCAACATGGAAGTTTGCTCAGAGGGGTCCAACGGTGACCAAGAGATCACGCCGAAGAAGACAGTGAACGATGCTATTGAAGTGAGAAGCCTGCAAGA
AAGAGAAGATGTAACAGCTAATCAAATGGGAACAAGAGACGTGGAAGAAGATCAAGACAGGGAGCAAGAGACAATTCTCAGCAAACTCGAAAAGCTGAAGATTGAGGAAA
AGAAGAGAATAGTGGCGGTCGAAGATGTTGATATAGAGGAGGACACAGATAAAGAATTATTGAAATATGCTGAAGCTTTGGGGAATTCAATAGGAAGATTTGAAGAGGTC
GAAGCAGATGAGGAAGGACAAATGGGAGGAGAGTCTTTGAGAGTGGAAATACAAGTGGATGTGAGGGAACCTCTGAAAAGGGGAACTCATGTTAAGACGGGCACAAAAGG
AGAAACAAAATGGATTCCTATTACCTACGAAAAACTTCCAGACTTTTGCTATTTCTGTGGGAAGCTGGGTCATGTTTTTCAAGAATGCAGGGAGGAAGGTGCAGAGGGGG
AAATCGAGCTAAGCTATGGAGTGGGGATGAGAGAAACTCAAACTAGTAAAGGAGTGTATAAACACCCAAAAGCCCAGTTCAGATTTCAGAGTTTCAGAGGTAGAGGAAGG
GGAAGGTTCTACAGCACAGGGGAAGAGTTCCAAAGCAAATCTTGGAGGGTCAAAAATAGAAGAGAACTAGAGATTGAAAATCAAGAGATGCATCAACAAAATATGGAAGC
TACTAATCAAAAAGAAAAAACCTCCGAGATCTCTGAAGGAAGGAAAGTTTCTAAAACGACGATGAATCAAGGTGGCGAAGCAATGGAGTCAGTTAGGTCGGCGATGAACT
TTCCGGCAGTCGTGGACGAGAGGAGGAGAGGGGAAAAAGAGACGTTAGAAAAAGACAAAAAGATTCAGAACCCGAAGTCATTTTCTGCAGAAAGAGAAAATGATGTAGAC
AGGAAAAATGATGAGAATAGTAAACAAAAAGACAAGGGTCAATGTCAGAAGAAAAAGATGATTTTCACACAAAAAGACAAGTCCAAGACAGCAATCACACCGTTAAAACT
CAACCTGGCAATGGGCCCAATCTTAATCAGCATTCCAAAAGCCCAACGGGGAAAGAAAAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACGATGAGGGCAACATGGAAGTTTGCTCAGAGGGGTCCAACGGTGACCAAGAGATCACGCCGAAGAAGACAGTGAACGATGCTATTGAAGTGAGAAGCCTGCAAGA
AAGAGAAGATGTAACAGCTAATCAAATGGGAACAAGAGACGTGGAAGAAGATCAAGACAGGGAGCAAGAGACAATTCTCAGCAAACTCGAAAAGCTGAAGATTGAGGAAA
AGAAGAGAATAGTGGCGGTCGAAGATGTTGATATAGAGGAGGACACAGATAAAGAATTATTGAAATATGCTGAAGCTTTGGGGAATTCAATAGGAAGATTTGAAGAGGTC
GAAGCAGATGAGGAAGGACAAATGGGAGGAGAGTCTTTGAGAGTGGAAATACAAGTGGATGTGAGGGAACCTCTGAAAAGGGGAACTCATGTTAAGACGGGCACAAAAGG
AGAAACAAAATGGATTCCTATTACCTACGAAAAACTTCCAGACTTTTGCTATTTCTGTGGGAAGCTGGGTCATGTTTTTCAAGAATGCAGGGAGGAAGGTGCAGAGGGGG
AAATCGAGCTAAGCTATGGAGTGGGGATGAGAGAAACTCAAACTAGTAAAGGAGTGTATAAACACCCAAAAGCCCAGTTCAGATTTCAGAGTTTCAGAGGTAGAGGAAGG
GGAAGGTTCTACAGCACAGGGGAAGAGTTCCAAAGCAAATCTTGGAGGGTCAAAAATAGAAGAGAACTAGAGATTGAAAATCAAGAGATGCATCAACAAAATATGGAAGC
TACTAATCAAAAAGAAAAAACCTCCGAGATCTCTGAAGGAAGGAAAGTTTCTAAAACGACGATGAATCAAGGTGGCGAAGCAATGGAGTCAGTTAGGTCGGCGATGAACT
TTCCGGCAGTCGTGGACGAGAGGAGGAGAGGGGAAAAAGAGACGTTAGAAAAAGACAAAAAGATTCAGAACCCGAAGTCATTTTCTGCAGAAAGAGAAAATGATGTAGAC
AGGAAAAATGATGAGAATAGTAAACAAAAAGACAAGGGTCAATGTCAGAAGAAAAAGATGATTTTCACACAAAAAGACAAGTCCAAGACAGCAATCACACCGTTAAAACT
CAACCTGGCAATGGGCCCAATCTTAATCAGCATTCCAAAAGCCCAACGGGGAAAGAAAAAGTAA
Protein sequenceShow/hide protein sequence
MDDEGNMEVCSEGSNGDQEITPKKTVNDAIEVRSLQEREDVTANQMGTRDVEEDQDREQETILSKLEKLKIEEKKRIVAVEDVDIEEDTDKELLKYAEALGNSIGRFEEV
EADEEGQMGGESLRVEIQVDVREPLKRGTHVKTGTKGETKWIPITYEKLPDFCYFCGKLGHVFQECREEGAEGEIELSYGVGMRETQTSKGVYKHPKAQFRFQSFRGRGR
GRFYSTGEEFQSKSWRVKNRRELEIENQEMHQQNMEATNQKEKTSEISEGRKVSKTTMNQGGEAMESVRSAMNFPAVVDERRRGEKETLEKDKKIQNPKSFSAERENDVD
RKNDENSKQKDKGQCQKKKMIFTQKDKSKTAITPLKLNLAMGPILISIPKAQRGKKK