; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0038455 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038455
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description29 kDa ribonucleoprotein, chloroplastic
Genome locationchr2:17834201..17838925
RNA-Seq ExpressionLag0038455
SyntenyLag0038455
Gene Ontology termsGO:1901259 - chloroplast rRNA processing (biological process)
GO:0003729 - mRNA binding (molecular function)
GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (molecular function)
GO:0051287 - NAD binding (molecular function)
InterPro domainsIPR006139 - D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004137828.1 29 kDa ribonucleoprotein, chloroplastic [Cucumis sativus]1.9e-2160Show/hide
Query:  LTLSSLTSKTLSLSNPKIKLFSLNPSSSAFFPIPFPFALLFFILIG--FLHPFPSRLGRNVVVSSDFNREKETLVADGDDSNYTPDLKLFIENLCFSVDS
        LTL SLT KTLS SNPK KLFSLNPSSS    +  P ++  F+L       PF SR  RNV VSSD+ +E+ TL  DGDDS+Y PDLKLF+ NL F+VDS
Subjt:  LTLSSLTSKTLSLSNPKIKLFSLNPSSSAFFPIPFPFALLFFILIG--FLHPFPSRLGRNVVVSSDFNREKETLVADGDDSNYTPDLKLFIENLCFSVDS

Query:  AQFISLFESVGQIER
        AQ   LFES GQ+ER
Subjt:  AQFISLFESVGQIER

XP_008442686.1 PREDICTED: 29 kDa ribonucleoprotein, chloroplastic [Cucumis melo]1.0e-2454.55Show/hide
Query:  LTLSSLTSKTLSLSNPKIKLFSLNPSSSAFFPIPFPFALLFFILIGFLHPFPSRLGRNVVVSSDFNREKETLVADGDDSNYTPDLKLFIENLCFSVDSAQ
        LTLSSLT KTLSLSNPK KLFSLNPSSS     P   +           PF SR  RNV VSSD+++E++TL ADGDDS Y PDLKLF+ NL FSVDSAQ
Subjt:  LTLSSLTSKTLSLSNPKIKLFSLNPSSSAFFPIPFPFALLFFILIGFLHPFPSRLGRNVVVSSDFNREKETLVADGDDSNYTPDLKLFIENLCFSVDSAQ

Query:  FISLFESVGQIERFRHI-------SAGILQSLSGAIDEVKAVS
           LFES GQ+ER   I       S G        +DEV+A +
Subjt:  FISLFESVGQIERFRHI-------SAGILQSLSGAIDEVKAVS

XP_022935639.1 29 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata]8.3e-2257.89Show/hide
Query:  FLTLSSLTSKTLSLSNPKIKLFSLNPSSSAFFPIPFPFALLFFILIGFLHPFPSRLGRNVVVSSDFNREKETLVADGDDSNYTPDLKLFIENLCFSVDSA
        FLTLSSLT KTLS SNPK +LFSLNPSS  F   P   + L          F SR  RNV VSSDF++E++ L  DGDDS+Y PDL+LF+ NL F++DSA
Subjt:  FLTLSSLTSKTLSLSNPKIKLFSLNPSSSAFFPIPFPFALLFFILIGFLHPFPSRLGRNVVVSSDFNREKETLVADGDDSNYTPDLKLFIENLCFSVDSA

Query:  QFISLFESVGQIER
        Q   LFES GQ+ER
Subjt:  QFISLFESVGQIER

XP_023005862.1 29 kDa ribonucleoprotein, chloroplastic-like [Cucurbita maxima]8.3e-2257.89Show/hide
Query:  FLTLSSLTSKTLSLSNPKIKLFSLNPSSSAFFPIPFPFALLFFILIGFLHPFPSRLGRNVVVSSDFNREKETLVADGDDSNYTPDLKLFIENLCFSVDSA
        FL LSSLT KTLS SNPK +LFSLNPSS  F   P   + L F        F SR  RNV VSSDF++E++ L  DGDDS+Y PDL+LF+ NL F++DSA
Subjt:  FLTLSSLTSKTLSLSNPKIKLFSLNPSSSAFFPIPFPFALLFFILIGFLHPFPSRLGRNVVVSSDFNREKETLVADGDDSNYTPDLKLFIENLCFSVDSA

Query:  QFISLFESVGQIER
        Q   LFES GQ+ER
Subjt:  QFISLFESVGQIER

XP_038905951.1 29 kDa ribonucleoprotein A, chloroplastic [Benincasa hispida]5.8e-2351.05Show/hide
Query:  LTLSSLTSKTLSLSNPKIKLFSLNPSSSAFFPIPFPFALLFFILIGFLHPFPSRLGRNVVVSSDFNREKETLVADGDDSNYTPDLKLFIENLCFSVDSAQ
        LTLS+LT KTLSLSNPKIKLFSLNPSS+     P   + +         PF SR  RNV VSSD+++E++TL AD ++++Y PDLKLF+ NL FSVDSAQ
Subjt:  LTLSSLTSKTLSLSNPKIKLFSLNPSSSAFFPIPFPFALLFFILIGFLHPFPSRLGRNVVVSSDFNREKETLVADGDDSNYTPDLKLFIENLCFSVDSAQ

Query:  FISLFESVGQIERFRHI-------SAGILQSLSGAIDEVKAVS
           LFES GQ+ER   I       S G       ++DEV+A +
Subjt:  FISLFESVGQIERFRHI-------SAGILQSLSGAIDEVKAVS

TrEMBL top hitse value%identityAlignment
A0A0A0LAY6 Uncharacterized protein9.0e-2260Show/hide
Query:  LTLSSLTSKTLSLSNPKIKLFSLNPSSSAFFPIPFPFALLFFILIG--FLHPFPSRLGRNVVVSSDFNREKETLVADGDDSNYTPDLKLFIENLCFSVDS
        LTL SLT KTLS SNPK KLFSLNPSSS    +  P ++  F+L       PF SR  RNV VSSD+ +E+ TL  DGDDS+Y PDLKLF+ NL F+VDS
Subjt:  LTLSSLTSKTLSLSNPKIKLFSLNPSSSAFFPIPFPFALLFFILIG--FLHPFPSRLGRNVVVSSDFNREKETLVADGDDSNYTPDLKLFIENLCFSVDS

Query:  AQFISLFESVGQIER
        AQ   LFES GQ+ER
Subjt:  AQFISLFESVGQIER

A0A1S3B5S7 29 kDa ribonucleoprotein, chloroplastic5.1e-2554.55Show/hide
Query:  LTLSSLTSKTLSLSNPKIKLFSLNPSSSAFFPIPFPFALLFFILIGFLHPFPSRLGRNVVVSSDFNREKETLVADGDDSNYTPDLKLFIENLCFSVDSAQ
        LTLSSLT KTLSLSNPK KLFSLNPSSS     P   +           PF SR  RNV VSSD+++E++TL ADGDDS Y PDLKLF+ NL FSVDSAQ
Subjt:  LTLSSLTSKTLSLSNPKIKLFSLNPSSSAFFPIPFPFALLFFILIGFLHPFPSRLGRNVVVSSDFNREKETLVADGDDSNYTPDLKLFIENLCFSVDSAQ

Query:  FISLFESVGQIERFRHI-------SAGILQSLSGAIDEVKAVS
           LFES GQ+ER   I       S G        +DEV+A +
Subjt:  FISLFESVGQIERFRHI-------SAGILQSLSGAIDEVKAVS

A0A5A7TQA3 29 kDa ribonucleoprotein5.1e-2554.55Show/hide
Query:  LTLSSLTSKTLSLSNPKIKLFSLNPSSSAFFPIPFPFALLFFILIGFLHPFPSRLGRNVVVSSDFNREKETLVADGDDSNYTPDLKLFIENLCFSVDSAQ
        LTLSSLT KTLSLSNPK KLFSLNPSSS     P   +           PF SR  RNV VSSD+++E++TL ADGDDS Y PDLKLF+ NL FSVDSAQ
Subjt:  LTLSSLTSKTLSLSNPKIKLFSLNPSSSAFFPIPFPFALLFFILIGFLHPFPSRLGRNVVVSSDFNREKETLVADGDDSNYTPDLKLFIENLCFSVDSAQ

Query:  FISLFESVGQIERFRHI-------SAGILQSLSGAIDEVKAVS
           LFES GQ+ER   I       S G        +DEV+A +
Subjt:  FISLFESVGQIERFRHI-------SAGILQSLSGAIDEVKAVS

A0A6J1F601 29 kDa ribonucleoprotein, chloroplastic-like4.0e-2257.89Show/hide
Query:  FLTLSSLTSKTLSLSNPKIKLFSLNPSSSAFFPIPFPFALLFFILIGFLHPFPSRLGRNVVVSSDFNREKETLVADGDDSNYTPDLKLFIENLCFSVDSA
        FLTLSSLT KTLS SNPK +LFSLNPSS  F   P   + L          F SR  RNV VSSDF++E++ L  DGDDS+Y PDL+LF+ NL F++DSA
Subjt:  FLTLSSLTSKTLSLSNPKIKLFSLNPSSSAFFPIPFPFALLFFILIGFLHPFPSRLGRNVVVSSDFNREKETLVADGDDSNYTPDLKLFIENLCFSVDSA

Query:  QFISLFESVGQIER
        Q   LFES GQ+ER
Subjt:  QFISLFESVGQIER

A0A6J1KUB7 29 kDa ribonucleoprotein, chloroplastic-like4.0e-2257.89Show/hide
Query:  FLTLSSLTSKTLSLSNPKIKLFSLNPSSSAFFPIPFPFALLFFILIGFLHPFPSRLGRNVVVSSDFNREKETLVADGDDSNYTPDLKLFIENLCFSVDSA
        FL LSSLT KTLS SNPK +LFSLNPSS  F   P   + L F        F SR  RNV VSSDF++E++ L  DGDDS+Y PDL+LF+ NL F++DSA
Subjt:  FLTLSSLTSKTLSLSNPKIKLFSLNPSSSAFFPIPFPFALLFFILIGFLHPFPSRLGRNVVVSSDFNREKETLVADGDDSNYTPDLKLFIENLCFSVDSA

Query:  QFISLFESVGQIER
        Q   LFES GQ+ER
Subjt:  QFISLFESVGQIER

SwissProt top hitse value%identityAlignment
P13443 Glycerate dehydrogenase6.9e-1191.43Show/hide
Query:  AGGKAFSNMAIGYNNVDVNAANKYGVAVGNTPGLV
        AGGKAFSNMA+GYNNVDVNAANKYGVAVGNTPG++
Subjt:  AGGKAFSNMAIGYNNVDVNAANKYGVAVGNTPGLV

Q08935 29 kDa ribonucleoprotein A, chloroplastic1.5e-0539.82Show/hide
Query:  SLTSKTLSLSNPKIKLFSLNPSSSAFFPIPFPFALLFFILIGFLHPFPSRLGRNVVVSSDFNREKETLVADGDDS-----NYTPDLKLFIENLCFSVDSA
        SLT +TL L  P  +  SL     +FF +  P + L   L      F SR  R V + SDF++ ++  V DGDD      N++PDLK+F+ NL FS DSA
Subjt:  SLTSKTLSLSNPKIKLFSLNPSSSAFFPIPFPFALLFFILIGFLHPFPSRLGRNVVVSSDFNREKETLVADGDDS-----NYTPDLKLFIENLCFSVDSA

Query:  QFISLFESVGQIE
            LFE  G +E
Subjt:  QFISLFESVGQIE

Q43349 29 kDa ribonucleoprotein, chloroplastic6.2e-1240.8Show/hide
Query:  SLTSKTLSLSNPK-IKLFSLNPSSSAFFPIPFPFALLFFILIGFL----------HPFPSRLGRNVVVSSDFNREKETLVADGDDS------NYTPDLKL
        S ++ +LS  NPK + L    P+S +  P    F L    L+               +PSR  RNV VSSDF  E++ + ADGDDS      +++PDLKL
Subjt:  SLTSKTLSLSNPK-IKLFSLNPSSSAFFPIPFPFALLFFILIGFL----------HPFPSRLGRNVVVSSDFNREKETLVADGDDS------NYTPDLKL

Query:  FIENLCFSVDSAQFISLFESVGQIE
        F+ NL F+VDSAQ   LFES G +E
Subjt:  FIENLCFSVDSAQFISLFESVGQIE

Q9C9W5 Glycerate dehydrogenase HPR, peroxisomal4.4e-1085.71Show/hide
Query:  AGGKAFSNMAIGYNNVDVNAANKYGVAVGNTPGLV
        AGGKAFSNMA+GYNNVDV AANKYG+AVGNTPG++
Subjt:  AGGKAFSNMAIGYNNVDVNAANKYGVAVGNTPGLV

Q9ZUU4 RNA-binding protein CP29B, chloroplastic1.7e-0636.21Show/hide
Query:  SSLTSKTLSLSNPKIKLFSLN-PSSSAFFPIPFPFAL----LFFILIGFLHPFPSRLGRNVVVSSDFNREKETL--VADGDDSNYTPDLKLFIENLCFSV
        +S +S  LS  NPK   F ++ P+S +       F L    + F +    +   SR  RNV ++S+F  E++    VA   + +++ DLKLF+ NL F+V
Subjt:  SSLTSKTLSLSNPKIKLFSLN-PSSSAFFPIPFPFAL----LFFILIGFLHPFPSRLGRNVVVSSDFNREKETL--VADGDDSNYTPDLKLFIENLCFSV

Query:  DSAQFISLFESVGQIE
        DSAQ   LFES G +E
Subjt:  DSAQFISLFESVGQIE

Arabidopsis top hitse value%identityAlignment
AT1G68010.1 hydroxypyruvate reductase3.2e-1185.71Show/hide
Query:  AGGKAFSNMAIGYNNVDVNAANKYGVAVGNTPGLV
        AGGKAFSNMA+GYNNVDV AANKYG+AVGNTPG++
Subjt:  AGGKAFSNMAIGYNNVDVNAANKYGVAVGNTPGLV

AT3G53460.1 chloroplast RNA-binding protein 294.4e-1340.8Show/hide
Query:  SLTSKTLSLSNPK-IKLFSLNPSSSAFFPIPFPFALLFFILIGFL----------HPFPSRLGRNVVVSSDFNREKETLVADGDDS------NYTPDLKL
        S ++ +LS  NPK + L    P+S +  P    F L    L+               +PSR  RNV VSSDF  E++ + ADGDDS      +++PDLKL
Subjt:  SLTSKTLSLSNPK-IKLFSLNPSSSAFFPIPFPFALLFFILIGFL----------HPFPSRLGRNVVVSSDFNREKETLVADGDDS------NYTPDLKL

Query:  FIENLCFSVDSAQFISLFESVGQIE
        F+ NL F+VDSAQ   LFES G +E
Subjt:  FIENLCFSVDSAQFISLFESVGQIE

AT3G53460.2 chloroplast RNA-binding protein 294.4e-1340.8Show/hide
Query:  SLTSKTLSLSNPK-IKLFSLNPSSSAFFPIPFPFALLFFILIGFL----------HPFPSRLGRNVVVSSDFNREKETLVADGDDS------NYTPDLKL
        S ++ +LS  NPK + L    P+S +  P    F L    L+               +PSR  RNV VSSDF  E++ + ADGDDS      +++PDLKL
Subjt:  SLTSKTLSLSNPK-IKLFSLNPSSSAFFPIPFPFALLFFILIGFL----------HPFPSRLGRNVVVSSDFNREKETLVADGDDS------NYTPDLKL

Query:  FIENLCFSVDSAQFISLFESVGQIE
        F+ NL F+VDSAQ   LFES G +E
Subjt:  FIENLCFSVDSAQFISLFESVGQIE

AT3G53460.3 chloroplast RNA-binding protein 294.4e-1340.8Show/hide
Query:  SLTSKTLSLSNPK-IKLFSLNPSSSAFFPIPFPFALLFFILIGFL----------HPFPSRLGRNVVVSSDFNREKETLVADGDDS------NYTPDLKL
        S ++ +LS  NPK + L    P+S +  P    F L    L+               +PSR  RNV VSSDF  E++ + ADGDDS      +++PDLKL
Subjt:  SLTSKTLSLSNPK-IKLFSLNPSSSAFFPIPFPFALLFFILIGFL----------HPFPSRLGRNVVVSSDFNREKETLVADGDDS------NYTPDLKL

Query:  FIENLCFSVDSAQFISLFESVGQIE
        F+ NL F+VDSAQ   LFES G +E
Subjt:  FIENLCFSVDSAQFISLFESVGQIE

AT3G53460.4 chloroplast RNA-binding protein 294.4e-1340.8Show/hide
Query:  SLTSKTLSLSNPK-IKLFSLNPSSSAFFPIPFPFALLFFILIGFL----------HPFPSRLGRNVVVSSDFNREKETLVADGDDS------NYTPDLKL
        S ++ +LS  NPK + L    P+S +  P    F L    L+               +PSR  RNV VSSDF  E++ + ADGDDS      +++PDLKL
Subjt:  SLTSKTLSLSNPK-IKLFSLNPSSSAFFPIPFPFALLFFILIGFL----------HPFPSRLGRNVVVSSDFNREKETLVADGDDS------NYTPDLKL

Query:  FIENLCFSVDSAQFISLFESVGQIE
        F+ NL F+VDSAQ   LFES G +E
Subjt:  FIENLCFSVDSAQFISLFESVGQIE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGATTCACTTTTAACGGCGGTCAAAGCCCGCCATTAAAAGAAAACCACTTTACCCCTTTTTTAATCTGTTTCTCTCTCCTTAAGCCTCTTCTCTTTCTCCTCCGCGA
CTTCCTCACGCTCTCATCCCTAACCTCCAAAACCTTATCCCTTTCTAACCCTAAAATCAAACTCTTCTCACTCAATCCTTCTTCCTCCGCCTTCTTTCCAATCCCATTTC
CATTTGCTCTTTTGTTCTTCATTCTGATAGGGTTTCTCCACCCTTTTCCCTCTCGCTTGGGCAGAAATGTTGTCGTCTCATCCGATTTCAACCGAGAGAAAGAAACCCTT
GTCGCTGATGGAGACGACTCTAACTACACTCCCGACCTCAAACTCTTCATCGAAAATCTTTGTTTCAGCGTCGACAGTGCTCAGTTCATTAGCTTGTTCGAAAGTGTTGG
ACAAATTGAACGGTTCAGGCACATTTCTGCAGGAATTCTTCAATCTCTTTCAGGTGCTATTGATGAGGTTAAGGCTGTCAGCTGCTGTTTGAAAAACAAAACATGGTACT
TCACTTCAACATGCCTTAAAATGTCCACTCCACCACTATTTCCACCATTGATTATGGATAGATTGACTCCTTGTCGAGCTCCTCATAAAGCATGGATGTTGATGGATCTT
GAGATAAAAGAATCTAGAAAAAGAGGTATGAAAGAGGTTGAAGCTGCTAGAGGAGAAAGTGACATGTTGTGCTCGAATTTGTTTCACATGTGTAGTAGTAACTCCATCGA
AGAGGAGGATGGACTAAGTGGTGTTCTAAAGGTCCAAGGCCTAAACTTATTGGGGGGAGGTGTTGCGGGAGGCAAAGCTTTTAGTAATATGGCTATTGGTTACAATAATG
TAGATGTTAATGCTGCTAATAAGTATGGTGTTGCTGTAGGAAACACTCCTGGTCTTGTTGTGAACCTGAAGTGTTGTGAGGCTGTAGTTGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGATTCACTTTTAACGGCGGTCAAAGCCCGCCATTAAAAGAAAACCACTTTACCCCTTTTTTAATCTGTTTCTCTCTCCTTAAGCCTCTTCTCTTTCTCCTCCGCGA
CTTCCTCACGCTCTCATCCCTAACCTCCAAAACCTTATCCCTTTCTAACCCTAAAATCAAACTCTTCTCACTCAATCCTTCTTCCTCCGCCTTCTTTCCAATCCCATTTC
CATTTGCTCTTTTGTTCTTCATTCTGATAGGGTTTCTCCACCCTTTTCCCTCTCGCTTGGGCAGAAATGTTGTCGTCTCATCCGATTTCAACCGAGAGAAAGAAACCCTT
GTCGCTGATGGAGACGACTCTAACTACACTCCCGACCTCAAACTCTTCATCGAAAATCTTTGTTTCAGCGTCGACAGTGCTCAGTTCATTAGCTTGTTCGAAAGTGTTGG
ACAAATTGAACGGTTCAGGCACATTTCTGCAGGAATTCTTCAATCTCTTTCAGGTGCTATTGATGAGGTTAAGGCTGTCAGCTGCTGTTTGAAAAACAAAACATGGTACT
TCACTTCAACATGCCTTAAAATGTCCACTCCACCACTATTTCCACCATTGATTATGGATAGATTGACTCCTTGTCGAGCTCCTCATAAAGCATGGATGTTGATGGATCTT
GAGATAAAAGAATCTAGAAAAAGAGGTATGAAAGAGGTTGAAGCTGCTAGAGGAGAAAGTGACATGTTGTGCTCGAATTTGTTTCACATGTGTAGTAGTAACTCCATCGA
AGAGGAGGATGGACTAAGTGGTGTTCTAAAGGTCCAAGGCCTAAACTTATTGGGGGGAGGTGTTGCGGGAGGCAAAGCTTTTAGTAATATGGCTATTGGTTACAATAATG
TAGATGTTAATGCTGCTAATAAGTATGGTGTTGCTGTAGGAAACACTCCTGGTCTTGTTGTGAACCTGAAGTGTTGTGAGGCTGTAGTTGAGTGA
Protein sequenceShow/hide protein sequence
MRFTFNGGQSPPLKENHFTPFLICFSLLKPLLFLLRDFLTLSSLTSKTLSLSNPKIKLFSLNPSSSAFFPIPFPFALLFFILIGFLHPFPSRLGRNVVVSSDFNREKETL
VADGDDSNYTPDLKLFIENLCFSVDSAQFISLFESVGQIERFRHISAGILQSLSGAIDEVKAVSCCLKNKTWYFTSTCLKMSTPPLFPPLIMDRLTPCRAPHKAWMLMDL
EIKESRKRGMKEVEAARGESDMLCSNLFHMCSSNSIEEEDGLSGVLKVQGLNLLGGGVAGGKAFSNMAIGYNNVDVNAANKYGVAVGNTPGLVVNLKCCEAVVE