| GenBank top hits | e value | %identity | Alignment |
|---|
| CAN61322.1 hypothetical protein VITISV_012106 [Vitis vinifera] | 4.9e-57 | 34.83 | Show/hide |
Query: LKTQLQRIKKDGLSVSQYLSKIKEIGDKFLAIGEPISYRDHFAHILDGLGSDYNAFVTYIQNRSDNPALEDVRSLLLAYEARLEKQNSVDQLNLAQASLA
L+ +LQ KK +S+ Y+ KIK D AIGEP+S +D ++L GLGSDYNA VT I R D +LE + S+LLA+E RLE+Q+S++Q++ AS +
Subjt: LKTQLQRIKKDGLSVSQYLSKIKEIGDKFLAIGEPISYRDHFAHILDGLGSDYNAFVTYIQNRSDNPALEDVRSLLLAYEARLEKQNSVDQLNLAQASLA
Query: TLQ---LHNNSRRPPSRVPSNNQF---------------RPPFNPFSSSP--VLSNSFSPSLLESYH---------------------------------
+ N R P+NN + R +P S P L F + YH
Subjt: TLQ---LHNNSRRPPSRVPSNNQF---------------RPPFNPFSSSP--VLSNSFSPSLLESYH---------------------------------
Query: ---PDENWYLDSGATHHMTSDASSLTHSMSYGGGEHATVGDGKKVSISLIVTSFIPSLSQKPVFLDSVLHTHAITKKLLSVARLCKDNRAFVEFHSSFFL
DE+WYLDSGA+HH+T + +LT + Y G + T+G+GK +SIS I + + S + L V H I+ L+SVA+ C +N A +EFHS+ F
Subjt: ---PDENWYLDSGATHHMTSDASSLTHSMSYGGGEHATVGDGKKVSISLIVTSFIPSLSQKPVFLDSVLHTHAITKKLLSVARLCKDNRAFVEFHSSFFL
Query: VKDLQTNQILLKGTLEDGLYRLVVVSSVS-----SNVPVVHSSFSATVKSPSVFLALVAAPIWHLRLGHPSDATLRQILSQLHVSFSSSAHVACGSCQMA
VKDL T +L +G LE+GLY+ V S++ +N HS FS+TV++ A +WH RLGH S + ++++ +V+ C CQ+A
Subjt: VKDLQTNQILLKGTLEDGLYRLVVVSSVS-----SNVPVVHSSFSATVKSPSVFLALVAAPIWHLRLGHPSDATLRQILSQLHVSFSSSAHVACGSCQMA
Query: KSHCLLFSLAENKSCKPFKLVHSNVWGPSPQVSINGAHYFLLFID
KSH L L+ + KP +LV++++WGP+ S +GA YF+LF+D
Subjt: KSHCLLFSLAENKSCKPFKLVHSNVWGPSPQVSINGAHYFLLFID
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| RVW36350.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera] | 2.9e-57 | 34.83 | Show/hide |
Query: LKTQLQRIKKDGLSVSQYLSKIKEIGDKFLAIGEPISYRDHFAHILDGLGSDYNAFVTYIQNRSDNPALEDVRSLLLAYEARLEKQNSVDQLNLAQASLA
L+ +LQ KK +S+ Y+ KIK D AIGEP+S +D ++L GLGSDYNA VT I R D +LE + S+LLA+E RLE+Q+S++Q++ AS +
Subjt: LKTQLQRIKKDGLSVSQYLSKIKEIGDKFLAIGEPISYRDHFAHILDGLGSDYNAFVTYIQNRSDNPALEDVRSLLLAYEARLEKQNSVDQLNLAQASLA
Query: TLQ---LHNNSRRPPSRVPSNNQF---------------RPPFNPFSSSP--VLSNSFSPSLLESYH---------------------------------
+ N R P+NN + R +P S P L F + YH
Subjt: TLQ---LHNNSRRPPSRVPSNNQF---------------RPPFNPFSSSP--VLSNSFSPSLLESYH---------------------------------
Query: ---PDENWYLDSGATHHMTSDASSLTHSMSYGGGEHATVGDGKKVSISLIVTSFIPSLSQKPVFLDSVLHTHAITKKLLSVARLCKDNRAFVEFHSSFFL
DE+WYLDSGA+HH+T + +LT++ Y G + T+G+GK +SIS I + + S + L V H I+ L+SVA+ C +N A +EFHS+ F
Subjt: ---PDENWYLDSGATHHMTSDASSLTHSMSYGGGEHATVGDGKKVSISLIVTSFIPSLSQKPVFLDSVLHTHAITKKLLSVARLCKDNRAFVEFHSSFFL
Query: VKDLQTNQILLKGTLEDGLYRLVVVSSVS-----SNVPVVHSSFSATVKSPSVFLALVAAPIWHLRLGHPSDATLRQILSQLHVSFSSSAHVACGSCQMA
VKDL T +L +G LE+GLY+ V S++ +N HS FS+TV++ A +WH RLGH S + ++++ +V+ C CQ+A
Subjt: VKDLQTNQILLKGTLEDGLYRLVVVSSVS-----SNVPVVHSSFSATVKSPSVFLALVAAPIWHLRLGHPSDATLRQILSQLHVSFSSSAHVACGSCQMA
Query: KSHCLLFSLAENKSCKPFKLVHSNVWGPSPQVSINGAHYFLLFID
KSH L L+ + KP +LV++++WGP+ S +GA YF+LF+D
Subjt: KSHCLLFSLAENKSCKPFKLVHSNVWGPSPQVSINGAHYFLLFID
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| RVW69807.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera] | 5.6e-77 | 43.86 | Show/hide |
Query: VGLKTQLQRIKKDGLSVSQYLSKIKEIGDKFLAIGEPISYRDHFAHILDGLGSDYNAFVTYIQNRSDNPALEDVRSLLLAYEARLEKQNSVDQLNLAQAS
+ L +QLQRIKK + +S+YLS++K + D+F IGEP+SYRD IL+GL +Y+ FVT I NRSD P+L++V SLL YE RL +++ LN QA+
Subjt: VGLKTQLQRIKKDGLSVSQYLSKIKEIGDKFLAIGEPISYRDHFAHILDGLGSDYNAFVTYIQNRSDNPALEDVRSLLLAYEARLEKQNSVDQLNLAQAS
Query: LATLQLHNNSRRPPSRV-------------PSNNQFRPP-------FNP----FSSSPV---LSNSFSPSLLESYHPDENWYLDSGATHHMTSDASSLTH
Q N+ P ++ +N + PP FNP +SSP+ L+ S +P+ L S D +WY+DSGATHH T + +T
Subjt: LATLQLHNNSRRPPSRV-------------PSNNQFRPP-------FNP----FSSSPV---LSNSFSPSLLESYHPDENWYLDSGATHHMTSDASSLTH
Query: SMSYGGGEHATVGDGKKVSISLIVTSFIPSLSQKPVFLDSVLHTHAITKKLLSVARLCKDNRAFVEFHSSFFLVKDLQTNQILLKGTLEDGLYRLVVVSS
+M Y G+HA VG+ K++ IS I + + S S KP+ L+ VLHT I+K+L+SV RL DN+AFVEF+ +FFLVKD QT Q+LL+G LE GLY+L ++
Subjt: SMSYGGGEHATVGDGKKVSISLIVTSFIPSLSQKPVFLDSVLHTHAITKKLLSVARLCKDNRAFVEFHSSFFLVKDLQTNQILLKGTLEDGLYRLVVVSS
Query: V-SSNVPVVHSSFSATVKSPSVFLALV-AAPIWHLRLGHPSDATLRQILSQLHVSFSSSAHVACGSCQMAKSHCLLFSLAENKSCKPFKLVHSNVWGPSP
+ SS+V S+ FL+ +WH RLGHP+ + Q+L ++ FS+S H+ C SCQ+AKSH L F L+E+++ KPF LV+S++WGPSP
Subjt: V-SSNVPVVHSSFSATVKSPSVFLALV-AAPIWHLRLGHPSDATLRQILSQLHVSFSSSAHVACGSCQMAKSHCLLFSLAENKSCKPFKLVHSNVWGPSP
Query: QVSINGAHYFLLFID
S+ G YFLLFID
Subjt: QVSINGAHYFLLFID
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| RVW72303.1 Retrovirus-related Pol polyprotein from transposon RE2 [Vitis vinifera] | 3.6e-60 | 39.07 | Show/hide |
Query: LKTQLQRIKKDGLSVSQYLSKIKEIGDKFLAIGEPISYRDHFAHILDGLGSDYNAFVTYIQNRSDNPALEDVRSLLLAYEARLEKQNSVDQLNLAQASLA
L+ +LQ KK LS+ Y+ K+K D AIGEP+S +D ++L GLGSDYNA VT I R D ++E V S+LLA+E RLE+Q+S++Q + A+ A
Subjt: LKTQLQRIKKDGLSVSQYLSKIKEIGDKFLAIGEPISYRDHFAHILDGLGSDYNAFVTYIQNRSDNPALEDVRSLLLAYEARLEKQNSVDQLNLAQASLA
Query: TLQLHNNSRRPPSRVPSNNQFRPPFNPFSSSPVLSNSFSPSLLESYH-PDENWYLDSGATHHMTSDASSLTHSMSYGGGEHATVGDGKKVSISLIVTSFI
+ +NSR R + Q N S+ NS + S + D+ WYLDS A+HH+T +LT S Y + +G+GK +SIS + +
Subjt: TLQLHNNSRRPPSRVPSNNQFRPPFNPFSSSPVLSNSFSPSLLESYH-PDENWYLDSGATHHMTSDASSLTHSMSYGGGEHATVGDGKKVSISLIVTSFI
Query: PSLSQKPVFLDSVLHTHAITKKLLSVARLCKDNRAFVEFHSSFFLVKDLQTNQILLKGTLEDGLYRLVVVSSVSSNVPVVHSSFSATVKSPSVFLALVAA
S S L V H I+ L+SVA+ C +N A +EF S+ F VKDL T ++L +G LE+GLYR V++ S V V ++ S+T S + +
Subjt: PSLSQKPVFLDSVLHTHAITKKLLSVARLCKDNRAFVEFHSSFFLVKDLQTNQILLKGTLEDGLYRLVVVSSVSSNVPVVHSSFSATVKSPSVFLALVAA
Query: PIWHLRLGHPSDATLRQILSQLHVSFSSSAH----VACGSCQMAKSHCLLFSLAENKSCKPFKLVHSNVWGPSPQVSINGAHYFLLFID
+WH RLGH S + QI+ +VSF + + C SCQ+AKSH L ++ + + KP +LVH+++WGP+P S +GA YF+LF+D
Subjt: PIWHLRLGHPSDATLRQILSQLHVSFSSSAH----VACGSCQMAKSHCLLFSLAENKSCKPFKLVHSNVWGPSPQVSINGAHYFLLFID
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| RVW98057.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | 4.9e-57 | 33.95 | Show/hide |
Query: MISSCNLILISLHGKVGLKTQLQRIKKDGLSVSQYLSKIKEIGDKFLAIGEPISYRDHFAHILDGLGSDYNAFVTYIQNRSDNPALEDVRSLLLAYEARL
+ SSC+ I + L+ + Q KK +S+ Y+ K+K D AIGEP+S +D ++L GLGSDYNA VT I R D +LE V S+LLA+E RL
Subjt: MISSCNLILISLHGKVGLKTQLQRIKKDGLSVSQYLSKIKEIGDKFLAIGEPISYRDHFAHILDGLGSDYNAFVTYIQNRSDNPALEDVRSLLLAYEARL
Query: EKQNSVDQLNLAQASLATLQLHN------NSRRPPSRVPSNNQFR------------PPFNPFSSSP--VLSNSFSPSLLESYH----------------
E+Q S++QL A+ A+ + N R P+ + +N+ FR + S P L F ++ YH
Subjt: EKQNSVDQLNLAQASLATLQLHN------NSRRPPSRVPSNNQFR------------PPFNPFSSSP--VLSNSFSPSLLESYH----------------
Query: -------------------PDENWYLDSGATHHMTSDASSLTHSMSYGGGEHATVGDGKKVSISLIVTSFIPSLSQKPVF-LDSVLHTHAITKKLLSVAR
D+NWYLDSGA+HH+T + ++LT++ Y G + T+G+GK ++IS T F S F L V H I+ L+SVA+
Subjt: -------------------PDENWYLDSGATHHMTSDASSLTHSMSYGGGEHATVGDGKKVSISLIVTSFIPSLSQKPVF-LDSVLHTHAITKKLLSVAR
Query: LCKDNRAFVEFHSSFFLVKDLQTNQILLKGTLEDGLYRLVVVSSVSSNVPVVHSSFSATVKSPSVFLALVAA---PIWHLRLGHPSDATLRQILSQLHVS
C DN A +EFHS+ F VKDL T ++L +G LE+GLY+ V+S+ + + + S F +WH RLGH + + +I+ +VS
Subjt: LCKDNRAFVEFHSSFFLVKDLQTNQILLKGTLEDGLYRLVVVSSVSSNVPVVHSSFSATVKSPSVFLALVAA---PIWHLRLGHPSDATLRQILSQLHVS
Query: FSSSAHVACGSCQMAKSHCLLFSLAENKSCKPFKLVHSNVWGPSPQVSINGAHYFLLFID---RSIKSNVPRSGSLFQ---PINGS
C SCQ+AKSH L L+ + KP +LV++++WGP+ S +GA YF+LF+D RS S + SG L + P N S
Subjt: FSSSAHVACGSCQMAKSHCLLFSLAENKSCKPFKLVHSNVWGPSPQVSINGAHYFLLFID---RSIKSNVPRSGSLFQ---PINGS
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A438DLM0 Retrovirus-related Pol polyprotein from transposon RE1 | 1.4e-57 | 34.83 | Show/hide |
Query: LKTQLQRIKKDGLSVSQYLSKIKEIGDKFLAIGEPISYRDHFAHILDGLGSDYNAFVTYIQNRSDNPALEDVRSLLLAYEARLEKQNSVDQLNLAQASLA
L+ +LQ KK +S+ Y+ KIK D AIGEP+S +D ++L GLGSDYNA VT I R D +LE + S+LLA+E RLE+Q+S++Q++ AS +
Subjt: LKTQLQRIKKDGLSVSQYLSKIKEIGDKFLAIGEPISYRDHFAHILDGLGSDYNAFVTYIQNRSDNPALEDVRSLLLAYEARLEKQNSVDQLNLAQASLA
Query: TLQ---LHNNSRRPPSRVPSNNQF---------------RPPFNPFSSSP--VLSNSFSPSLLESYH---------------------------------
+ N R P+NN + R +P S P L F + YH
Subjt: TLQ---LHNNSRRPPSRVPSNNQF---------------RPPFNPFSSSP--VLSNSFSPSLLESYH---------------------------------
Query: ---PDENWYLDSGATHHMTSDASSLTHSMSYGGGEHATVGDGKKVSISLIVTSFIPSLSQKPVFLDSVLHTHAITKKLLSVARLCKDNRAFVEFHSSFFL
DE+WYLDSGA+HH+T + +LT++ Y G + T+G+GK +SIS I + + S + L V H I+ L+SVA+ C +N A +EFHS+ F
Subjt: ---PDENWYLDSGATHHMTSDASSLTHSMSYGGGEHATVGDGKKVSISLIVTSFIPSLSQKPVFLDSVLHTHAITKKLLSVARLCKDNRAFVEFHSSFFL
Query: VKDLQTNQILLKGTLEDGLYRLVVVSSVS-----SNVPVVHSSFSATVKSPSVFLALVAAPIWHLRLGHPSDATLRQILSQLHVSFSSSAHVACGSCQMA
VKDL T +L +G LE+GLY+ V S++ +N HS FS+TV++ A +WH RLGH S + ++++ +V+ C CQ+A
Subjt: VKDLQTNQILLKGTLEDGLYRLVVVSSVS-----SNVPVVHSSFSATVKSPSVFLALVAAPIWHLRLGHPSDATLRQILSQLHVSFSSSAHVACGSCQMA
Query: KSHCLLFSLAENKSCKPFKLVHSNVWGPSPQVSINGAHYFLLFID
KSH L L+ + KP +LV++++WGP+ S +GA YF+LF+D
Subjt: KSHCLLFSLAENKSCKPFKLVHSNVWGPSPQVSINGAHYFLLFID
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| A0A438GC62 Retrovirus-related Pol polyprotein from transposon RE1 | 2.7e-77 | 43.86 | Show/hide |
Query: VGLKTQLQRIKKDGLSVSQYLSKIKEIGDKFLAIGEPISYRDHFAHILDGLGSDYNAFVTYIQNRSDNPALEDVRSLLLAYEARLEKQNSVDQLNLAQAS
+ L +QLQRIKK + +S+YLS++K + D+F IGEP+SYRD IL+GL +Y+ FVT I NRSD P+L++V SLL YE RL +++ LN QA+
Subjt: VGLKTQLQRIKKDGLSVSQYLSKIKEIGDKFLAIGEPISYRDHFAHILDGLGSDYNAFVTYIQNRSDNPALEDVRSLLLAYEARLEKQNSVDQLNLAQAS
Query: LATLQLHNNSRRPPSRV-------------PSNNQFRPP-------FNP----FSSSPV---LSNSFSPSLLESYHPDENWYLDSGATHHMTSDASSLTH
Q N+ P ++ +N + PP FNP +SSP+ L+ S +P+ L S D +WY+DSGATHH T + +T
Subjt: LATLQLHNNSRRPPSRV-------------PSNNQFRPP-------FNP----FSSSPV---LSNSFSPSLLESYHPDENWYLDSGATHHMTSDASSLTH
Query: SMSYGGGEHATVGDGKKVSISLIVTSFIPSLSQKPVFLDSVLHTHAITKKLLSVARLCKDNRAFVEFHSSFFLVKDLQTNQILLKGTLEDGLYRLVVVSS
+M Y G+HA VG+ K++ IS I + + S S KP+ L+ VLHT I+K+L+SV RL DN+AFVEF+ +FFLVKD QT Q+LL+G LE GLY+L ++
Subjt: SMSYGGGEHATVGDGKKVSISLIVTSFIPSLSQKPVFLDSVLHTHAITKKLLSVARLCKDNRAFVEFHSSFFLVKDLQTNQILLKGTLEDGLYRLVVVSS
Query: V-SSNVPVVHSSFSATVKSPSVFLALV-AAPIWHLRLGHPSDATLRQILSQLHVSFSSSAHVACGSCQMAKSHCLLFSLAENKSCKPFKLVHSNVWGPSP
+ SS+V S+ FL+ +WH RLGHP+ + Q+L ++ FS+S H+ C SCQ+AKSH L F L+E+++ KPF LV+S++WGPSP
Subjt: V-SSNVPVVHSSFSATVKSPSVFLALV-AAPIWHLRLGHPSDATLRQILSQLHVSFSSSAHVACGSCQMAKSHCLLFSLAENKSCKPFKLVHSNVWGPSP
Query: QVSINGAHYFLLFID
S+ G YFLLFID
Subjt: QVSINGAHYFLLFID
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| A0A438GJB1 Retrovirus-related Pol polyprotein from transposon RE2 | 1.8e-60 | 39.07 | Show/hide |
Query: LKTQLQRIKKDGLSVSQYLSKIKEIGDKFLAIGEPISYRDHFAHILDGLGSDYNAFVTYIQNRSDNPALEDVRSLLLAYEARLEKQNSVDQLNLAQASLA
L+ +LQ KK LS+ Y+ K+K D AIGEP+S +D ++L GLGSDYNA VT I R D ++E V S+LLA+E RLE+Q+S++Q + A+ A
Subjt: LKTQLQRIKKDGLSVSQYLSKIKEIGDKFLAIGEPISYRDHFAHILDGLGSDYNAFVTYIQNRSDNPALEDVRSLLLAYEARLEKQNSVDQLNLAQASLA
Query: TLQLHNNSRRPPSRVPSNNQFRPPFNPFSSSPVLSNSFSPSLLESYH-PDENWYLDSGATHHMTSDASSLTHSMSYGGGEHATVGDGKKVSISLIVTSFI
+ +NSR R + Q N S+ NS + S + D+ WYLDS A+HH+T +LT S Y + +G+GK +SIS + +
Subjt: TLQLHNNSRRPPSRVPSNNQFRPPFNPFSSSPVLSNSFSPSLLESYH-PDENWYLDSGATHHMTSDASSLTHSMSYGGGEHATVGDGKKVSISLIVTSFI
Query: PSLSQKPVFLDSVLHTHAITKKLLSVARLCKDNRAFVEFHSSFFLVKDLQTNQILLKGTLEDGLYRLVVVSSVSSNVPVVHSSFSATVKSPSVFLALVAA
S S L V H I+ L+SVA+ C +N A +EF S+ F VKDL T ++L +G LE+GLYR V++ S V V ++ S+T S + +
Subjt: PSLSQKPVFLDSVLHTHAITKKLLSVARLCKDNRAFVEFHSSFFLVKDLQTNQILLKGTLEDGLYRLVVVSSVSSNVPVVHSSFSATVKSPSVFLALVAA
Query: PIWHLRLGHPSDATLRQILSQLHVSFSSSAH----VACGSCQMAKSHCLLFSLAENKSCKPFKLVHSNVWGPSPQVSINGAHYFLLFID
+WH RLGH S + QI+ +VSF + + C SCQ+AKSH L ++ + + KP +LVH+++WGP+P S +GA YF+LF+D
Subjt: PIWHLRLGHPSDATLRQILSQLHVSFSSSAH----VACGSCQMAKSHCLLFSLAENKSCKPFKLVHSNVWGPSPQVSINGAHYFLLFID
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| A0A438IG92 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 2.4e-57 | 34.83 | Show/hide |
Query: LKTQLQRIKKDGLSVSQYLSKIKEIGDKFLAIGEPISYRDHFAHILDGLGSDYNAFVTYIQNRSDNPALEDVRSLLLAYEARLEKQNSVDQLNLAQASLA
L+ +LQ KK +S+ Y+ KIK D AIGEP+S +D ++L GLGSDYNA VT I R D +LE + S+LLA+E RLE+Q+S++Q++ AS +
Subjt: LKTQLQRIKKDGLSVSQYLSKIKEIGDKFLAIGEPISYRDHFAHILDGLGSDYNAFVTYIQNRSDNPALEDVRSLLLAYEARLEKQNSVDQLNLAQASLA
Query: TLQ---LHNNSRRPPSRVPSNNQF---------------RPPFNPFSSSP--VLSNSFSPSLLESYH---------------------------------
+ N R P+NN + R +P S P L F + YH
Subjt: TLQ---LHNNSRRPPSRVPSNNQF---------------RPPFNPFSSSP--VLSNSFSPSLLESYH---------------------------------
Query: ---PDENWYLDSGATHHMTSDASSLTHSMSYGGGEHATVGDGKKVSISLIVTSFIPSLSQKPVFLDSVLHTHAITKKLLSVARLCKDNRAFVEFHSSFFL
DE+WYLDSGA+HH+T + +LT + Y G + T+G+GK +SIS I + + S + L V H I+ L+SVA+ C +N A +EFHS+ F
Subjt: ---PDENWYLDSGATHHMTSDASSLTHSMSYGGGEHATVGDGKKVSISLIVTSFIPSLSQKPVFLDSVLHTHAITKKLLSVARLCKDNRAFVEFHSSFFL
Query: VKDLQTNQILLKGTLEDGLYRLVVVSSVS-----SNVPVVHSSFSATVKSPSVFLALVAAPIWHLRLGHPSDATLRQILSQLHVSFSSSAHVACGSCQMA
VKDL T +L +G LE+GLY+ V S++ +N HS FS+TV++ A +WH RLGH S + ++++ +V+ C CQ+A
Subjt: VKDLQTNQILLKGTLEDGLYRLVVVSSVS-----SNVPVVHSSFSATVKSPSVFLALVAAPIWHLRLGHPSDATLRQILSQLHVSFSSSAHVACGSCQMA
Query: KSHCLLFSLAENKSCKPFKLVHSNVWGPSPQVSINGAHYFLLFID
KSH L L+ + KP +LV++++WGP+ S +GA YF+LF+D
Subjt: KSHCLLFSLAENKSCKPFKLVHSNVWGPSPQVSINGAHYFLLFID
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| A5BFR8 Integrase catalytic domain-containing protein | 2.4e-57 | 34.83 | Show/hide |
Query: LKTQLQRIKKDGLSVSQYLSKIKEIGDKFLAIGEPISYRDHFAHILDGLGSDYNAFVTYIQNRSDNPALEDVRSLLLAYEARLEKQNSVDQLNLAQASLA
L+ +LQ KK +S+ Y+ KIK D AIGEP+S +D ++L GLGSDYNA VT I R D +LE + S+LLA+E RLE+Q+S++Q++ AS +
Subjt: LKTQLQRIKKDGLSVSQYLSKIKEIGDKFLAIGEPISYRDHFAHILDGLGSDYNAFVTYIQNRSDNPALEDVRSLLLAYEARLEKQNSVDQLNLAQASLA
Query: TLQ---LHNNSRRPPSRVPSNNQF---------------RPPFNPFSSSP--VLSNSFSPSLLESYH---------------------------------
+ N R P+NN + R +P S P L F + YH
Subjt: TLQ---LHNNSRRPPSRVPSNNQF---------------RPPFNPFSSSP--VLSNSFSPSLLESYH---------------------------------
Query: ---PDENWYLDSGATHHMTSDASSLTHSMSYGGGEHATVGDGKKVSISLIVTSFIPSLSQKPVFLDSVLHTHAITKKLLSVARLCKDNRAFVEFHSSFFL
DE+WYLDSGA+HH+T + +LT + Y G + T+G+GK +SIS I + + S + L V H I+ L+SVA+ C +N A +EFHS+ F
Subjt: ---PDENWYLDSGATHHMTSDASSLTHSMSYGGGEHATVGDGKKVSISLIVTSFIPSLSQKPVFLDSVLHTHAITKKLLSVARLCKDNRAFVEFHSSFFL
Query: VKDLQTNQILLKGTLEDGLYRLVVVSSVS-----SNVPVVHSSFSATVKSPSVFLALVAAPIWHLRLGHPSDATLRQILSQLHVSFSSSAHVACGSCQMA
VKDL T +L +G LE+GLY+ V S++ +N HS FS+TV++ A +WH RLGH S + ++++ +V+ C CQ+A
Subjt: VKDLQTNQILLKGTLEDGLYRLVVVSSVS-----SNVPVVHSSFSATVKSPSVFLALVAAPIWHLRLGHPSDATLRQILSQLHVSFSSSAHVACGSCQMA
Query: KSHCLLFSLAENKSCKPFKLVHSNVWGPSPQVSINGAHYFLLFID
KSH L L+ + KP +LV++++WGP+ S +GA YF+LF+D
Subjt: KSHCLLFSLAENKSCKPFKLVHSNVWGPSPQVSINGAHYFLLFID
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 1.8e-06 | 22.47 | Show/hide |
Query: SLHGKVGLKTQLQRIK-KDGLSVSQYLSKIKEIGDKFLAIGEPISYRDHFAHILDGLGSDYNAFVTYIQNRS-DNPALEDVRSLLLAYEARLEKQNSVDQ
SL ++ L+ +L +K +S+ + E+ + LA G I D +H+L L S Y+ +T I+ S +N L V++ LL E +++ +
Subjt: SLHGKVGLKTQLQRIK-KDGLSVSQYLSKIKEIGDKFLAIGEPISYRDHFAHILDGLGSDYNAFVTYIQNRS-DNPALEDVRSLLLAYEARLEKQNSVDQ
Query: LNLAQASLATLQLHNNSR------------RPPSRVPSNNQFRPPFNP-----------FSSSPVLSN-----------------SFSPSLLESYHPDEN
N + +HNN+ +P N++++ + F +L+N +F + + +N
Subjt: LNLAQASLATLQLHNNSR------------RPPSRVPSNNQFRPPFNP-----------FSSSPVLSN-----------------SFSPSLLESYHPDEN
Query: --WYLDSGATHHMTSDASSLTHSMSYGGGEHATVGDGKKVSISLIVTSFIPSLSQKPVFLDSVLHTHAITKKLLSVARLCKDNRAFVEFHSSFFLVKDLQ
+ LDSGA+ H+ +D S T S+ V + I + + + L+ VL L+SV RL ++ +EF S +
Subjt: --WYLDSGATHHMTSDASSLTHSMSYGGGEHATVGDGKKVSISLIVTSFIPSLSQKPVFLDSVLHTHAITKKLLSVARLCKDNRAFVEFHSSFFLVKDLQ
Query: TNQILLKGTLEDGLYRLVVVSSVSSNVPVVH-SSFSATVKSPSVFLALVAAPIWHLRLGHPSDATLRQILSQLHVSFSSSAH------VACGSCQMAKSH
++GL +V S + +NVPV++ ++S K + F +WH R GH SD L +I + S S + C C K
Subjt: TNQILLKGTLEDGLYRLVVVSSVSSNVPVVH-SSFSATVKSPSVFLALVAAPIWHLRLGHPSDATLRQILSQLHVSFSSSAH------VACGSCQMAKSH
Query: CLLFSLAENKS--CKPFKLVHSNVWGPSPQVSINGAHYFLLFIDR
L F ++K+ +P +VHS+V GP V+++ +YF++F+D+
Subjt: CLLFSLAENKS--CKPFKLVHSNVWGPSPQVSINGAHYFLLFIDR
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 4.0e-09 | 22.58 | Show/hide |
Query: SLHGKVGLKTQLQRI-KKDGLSVSQYLSKIKEIGDKFLAIGEPISYRDHFAHILDGLGSDYNAFVTYIQNRSDNPALEDVRSLLLAYEARLEKQNSVDQL
+L K+ LK QL + +G + +L+ + + +G I D +L+ L S Y+ T I + L+DV S LL E +K + Q
Subjt: SLHGKVGLKTQLQRI-KKDGLSVSQYLSKIKEIGDKFLAIGEPISYRDHFAHILDGLGSDYNAFVTYIQNRSDNPALEDVRSLLLAYEARLEKQNSVDQL
Query: NLAQASLATLQLHNNS-----------RRPPSRVPSNNQFRPP--------------------FNPFSSSPVLSNSFSPSLL-----ESYH---PDENWY
+ + + Q +N+ R SRV + P N +++ ++ N+ + L E H P+ W
Subjt: NLAQASLATLQLHNNS-----------RRPPSRVPSNNQFRPP--------------------FNPFSSSPVLSNSFSPSLL-----ESYH---PDENWY
Query: LDSGATHHMTSDASSLTHSMSYGGGEHATV--GDGKKVSISLIVTSFIPSLSQKPVFLDSVLHTHAITKKLLSVARLCKDNRAFVEFHSSFFLVKDLQTN
+D+ A+HH T Y G+ TV G+ I+ I I + + L V H + L+S L +D + + L K +
Subjt: LDSGATHHMTSDASSLTHSMSYGGGEHATV--GDGKKVSISLIVTSFIPSLSQKPVFLDSVLHTHAITKKLLSVARLCKDNRAFVEFHSSFFLVKDLQTN
Query: QILLKGTLEDGLYRLVVVSSVSSNVPVVHSSFSATVKSPSVFLALVAAPIWHLRLGHPSDATLRQILSQLHVSFSSSAHV-ACGSCQMAKSHCLLFSLAE
++ KG LYR +N + +A SV +WH R+GH S+ L+ + + +S++ V C C K H + F +
Subjt: QILLKGTLEDGLYRLVVVSSVSSNVPVVHSSFSATVKSPSVFLALVAAPIWHLRLGHPSDATLRQILSQLHVSFSSSAHV-ACGSCQMAKSHCLLFSLAE
Query: NKSCKPFKLVHSNVWGPSPQVSINGAHYFLLFID
+ LV+S+V GP S+ G YF+ FID
Subjt: NKSCKPFKLVHSNVWGPSPQVSINGAHYFLLFID
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 1.0e-33 | 27.17 | Show/hide |
Query: LKTQLQRIKKDGLSVSQYLSKIKEIGDKFLAIGEPISYRDHFAHILDGLGSDYNAFVTYIQNRSDNPALEDVRSLLLAYEARLEKQNSVDQLNLAQASLA
L+TQL++ K ++ Y+ + D+ +G+P+ + + +L+ L +Y + I + P L ++ LL +E+++ +S + + +++
Subjt: LKTQLQRIKKDGLSVSQYLSKIKEIGDKFLAIGEPISYRDHFAHILDGLGSDYNAFVTYIQNRSDNPALEDVRSLLLAYEARLEKQNSVDQLNLAQASLA
Query: ----TLQLHNNSRRPPSRV--------------------PSNNQFRPPFNPFSSSPVLSNS----------------------FSP------SLLESYHP
T +NN+ +R P+NNQ +P V +S F+P L S +
Subjt: ----TLQLHNNSRRPPSRV--------------------PSNNQFRPPFNPFSSSPVLSNS----------------------FSP------SLLESYHP
Query: DENWYLDSGATHHMTSDASSLTHSMSYGGGEHATVGDGKKVSISLIVTSFIPSLSQKPVFLDSVLHTHAITKKLLSVARLCKDNRAFVEFHSSFFLVKDL
NW LDSGATHH+TSD ++L+ Y GG+ V DG + IS ++ + S +P+ L ++L+ I K L+SV RLC N VEF + F VKDL
Subjt: DENWYLDSGATHHMTSDASSLTHSMSYGGGEHATVGDGKKVSISLIVTSFIPSLSQKPVFLDSVLHTHAITKKLLSVARLCKDNRAFVEFHSSFFLVKDL
Query: QTNQILLKGTLEDGLYRLVVVSSVSSNVPVVHSSFSATVKSPSVFLALVAAPIWHLRLGHPSDATLRQILSQLHVSFSSSAH--VACGSCQMAKSHCLLF
T LL+G +D LY + SS ++ SS AT S WH RLGHP+ + L ++S +S + +H ++C C + KS+ + F
Subjt: QTNQILLKGTLEDGLYRLVVVSSVSSNVPVVHSSFSATVKSPSVFLALVAAPIWHLRLGHPSDATLRQILSQLHVSFSSSAH--VACGSCQMAKSHCLLF
Query: SLAENKSCKPFKLVHSNVWGPSPQVSINGAHYFLLFID
S + S +P + ++S+VW SP +S + Y+++F+D
Subjt: SLAENKSCKPFKLVHSNVWGPSPQVSINGAHYFLLFID
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 2.1e-34 | 28.95 | Show/hide |
Query: DKFLAIGEPISYRDHFAHILDGLGSDYNAFVTYIQNRSDNPALEDVRSLLLAYEARLEKQNSVDQLNLAQASLAT----------------LQLHNNSRR
D+ +G+P+ + + +L+ L DY + I + P+L ++ L+ E++L NS + + + A++ T +NN+ R
Subjt: DKFLAIGEPISYRDHFAHILDGLGSDYNAFVTYIQNRSDNPALEDVRSLLLAYEARLEKQNSVDQLNLAQASLAT----------------LQLHNNSRR
Query: PPSRVPSNNQFR--------------------------PPFNPFSSSPVLSNSFSP---------SLLESYHPDENWYLDSGATHHMTSDASSLTHSMSY
S PS++ R P + F S+ S SP + S + NW LDSGATHH+TSD ++L+ Y
Subjt: PPSRVPSNNQFR--------------------------PPFNPFSSSPVLSNSFSP---------SLLESYHPDENWYLDSGATHHMTSDASSLTHSMSY
Query: GGGEHATVGDGKKVSISLIVTSFIPSLSQKPVFLDSVLHTHAITKKLLSVARLCKDNRAFVEFHSSFFLVKDLQTNQILLKGTLEDGLYRLVVVSSVSSN
GG+ + DG + I+ ++ +P+ S + + L+ VL+ I K L+SV RLC NR VEF + F VKDL T LL+G +D LY + SS +
Subjt: GGGEHATVGDGKKVSISLIVTSFIPSLSQKPVFLDSVLHTHAITKKLLSVARLCKDNRAFVEFHSSFFLVKDLQTNQILLKGTLEDGLYRLVVVSSVSSN
Query: VPVVHSSFSATVKSPSVFLALVAAPIWHLRLGHPSDATLRQILSQLHVSFSSSAH--VACGSCQMAKSHCLLFSLAENKSCKPFKLVHSNVWGPSPQVSI
V + S S S WH RLGHPS A L ++S + + +H ++C C + KSH + FS + S KP + ++S+VW SP +SI
Subjt: VPVVHSSFSATVKSPSVFLALVAAPIWHLRLGHPSDATLRQILSQLHVSFSSSAH--VACGSCQMAKSHCLLFSLAENKSCKPFKLVHSNVWGPSPQVSI
Query: NGAHYFLLFID
+ Y+++F+D
Subjt: NGAHYFLLFID
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