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Lag0038544 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038544
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr2:20010946..20011326
RNA-Seq ExpressionLag0038544
SyntenyLag0038544
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF8391778.1 hypothetical protein HHK36_022012 [Tetracentron sinense]2.7e-0531.19Show/hide
Query:  SIEMAEALAIREGIELAKSIGIHPVWVETDSLLVWKLVQGFDTYENETQNIIEDIKSYEISGEMEGLLLTSRESNQVANALAVHARRCCVDGVWMEEAPP
        S  + EA+A REG++ A  +GI  V +E+DS+     +   +   +    +++D+K+  +S          RE N VA+ LA  A       VWME+APP
Subjt:  SIEMAEALAIREGIELAKSIGIHPVWVETDSLLVWKLVQGFDTYENETQNIIEDIKSYEISGEMEGLLLTSRESNQVANALAVHARRCCVDGVWMEEAPP

Query:  WASQLVYQD
        + + ++ QD
Subjt:  WASQLVYQD

XP_023920715.1 uncharacterized protein LOC112032187 [Quercus suber]7.2e-0632.08Show/hide
Query:  AEALAIREGIELAKSIGIHPVWVETDSLLVWKLVQGFDTYENETQNIIEDIKSYEISGEMEGLLLTSRESNQVANALAVHARRCCVDGVWMEEAPPWASQ
        AEALA R+ +E A   G   + +E D+  V + +   +   +   +I++DI+ +    +  G     RE N VA++LA  AR    D  WME+ PP A  
Subjt:  AEALAIREGIELAKSIGIHPVWVETDSLLVWKLVQGFDTYENETQNIIEDIKSYEISGEMEGLLLTSRESNQVANALAVHARRCCVDGVWMEEAPPWASQ

Query:  LVYQDR
         ++ DR
Subjt:  LVYQDR

XP_023928427.1 uncharacterized protein LOC112039753 [Quercus suber]8.5e-0736.11Show/hide
Query:  IEMAEALAIREGIELAKSIGIHPVWVETDSLLVWKLVQGFDTYENETQNIIEDIKSYEISGEMEGLLLTSRESNQVANALAVHARRCCVDGVWMEEAPPW
        +E+ E LAIR  I  A     + V +E+DSL V K +Q         ++IIED+K    + +    L T RE+NQVA+ LA++A        W+EE PP+
Subjt:  IEMAEALAIREGIELAKSIGIHPVWVETDSLLVWKLVQGFDTYENETQNIIEDIKSYEISGEMEGLLLTSRESNQVANALAVHARRCCVDGVWMEEAPPW

Query:  ASQLVYQD
         S +++ D
Subjt:  ASQLVYQD

XP_030941688.1 uncharacterized protein LOC115966628 [Quercus lobata]2.1e-0532.71Show/hide
Query:  EMAEALAIREGIELAKSIGIHPVWVETDSLLVWKLVQGFDTYENETQNIIEDIKSYEISGEMEGLLLTSRESNQVANALAVHARRCCVDGVWMEEAPPWA
        E AEALA R  +E A   G   + +E D++ V K V      ++   ++ +DI+          +    R +N VA++LA  AR    + +W+EE PP A
Subjt:  EMAEALAIREGIELAKSIGIHPVWVETDSLLVWKLVQGFDTYENETQNIIEDIKSYEISGEMEGLLLTSRESNQVANALAVHARRCCVDGVWMEEAPPWA

Query:  SQLVYQD
        S  +YQD
Subjt:  SQLVYQD

XP_030968482.1 uncharacterized protein LOC115988978 [Quercus lobata]1.6e-0536.52Show/hide
Query:  SIEMAEALAIREGIELAKSIGIHPVWVETDSLLVWKLVQGFDTYENETQNIIEDIKSYEISGEMEGLLLT------SRESNQVANALAVHARRCCVDGVW
        ++E+ EALA R  +   + +G+     E DS LV K + G  +  +   +I++D KS      + GL  T       R+SN VA+ALA  AR      VW
Subjt:  SIEMAEALAIREGIELAKSIGIHPVWVETDSLLVWKLVQGFDTYENETQNIIEDIKSYEISGEMEGLLLT------SRESNQVANALAVHARRCCVDGVW

Query:  MEEAPPWASQLVYQD
        ME  PP  S LVY D
Subjt:  MEEAPPWASQLVYQD

TrEMBL top hitse value%identityAlignment
A0A2N9ED23 Uncharacterized protein1.9e-0737.61Show/hide
Query:  SIEMAEALAIREGIELAKSIGIHPVWVETDSLLVWKLVQGFDTYENETQNIIEDIKSYEISGEMEGLLLTSRESNQVANALAVHARRCCVDGVWMEEAPP
        SIEM EALA R  I  AK +G+  V  E D+  + + ++  +T  +    +IED K+  +  +   L  T R  N VA+ALA  A  C    VWMEE PP
Subjt:  SIEMAEALAIREGIELAKSIGIHPVWVETDSLLVWKLVQGFDTYENETQNIIEDIKSYEISGEMEGLLLTSRESNQVANALAVHARRCCVDGVWMEEAPP

Query:  WASQLVYQD
          S ++  D
Subjt:  WASQLVYQD

A0A2N9F7C1 Uncharacterized protein3.5e-0635.78Show/hide
Query:  SIEMAEALAIREGIELAKSIGIHPVWVETDSLLVWKLVQGFDTYENETQNIIEDIKSYEISGEMEGLLLTSRESNQVANALAVHARRCCVDGVWMEEAPP
        ++EM EALA R  I  A+ +GI  V VE D+  + K +   D        +IED K+     +   L  T R  N VA+ALA  A  C    VW+EE PP
Subjt:  SIEMAEALAIREGIELAKSIGIHPVWVETDSLLVWKLVQGFDTYENETQNIIEDIKSYEISGEMEGLLLTSRESNQVANALAVHARRCCVDGVWMEEAPP

Query:  WASQLVYQD
          + ++  D
Subjt:  WASQLVYQD

A0A2N9FMJ0 Reverse transcriptase domain-containing protein2.4e-0731.19Show/hide
Query:  SIEMAEALAIREGIELAKSIGIHPVWVETDSLLVWKLVQGFDTYENETQNIIEDIKSYEISGEMEGLLLTSRESNQVANALAVHARRCCVDGVWMEEAPP
        S+++ EALA R  ++ A+ +G+H V  E DS  +   + G D  +     I++D+K   +S          R  N+VA+ALA  A+ C    VW +  PP
Subjt:  SIEMAEALAIREGIELAKSIGIHPVWVETDSLLVWKLVQGFDTYENETQNIIEDIKSYEISGEMEGLLLTSRESNQVANALAVHARRCCVDGVWMEEAPP

Query:  WASQLVYQD
            L++ D
Subjt:  WASQLVYQD

A0A2N9IGQ4 Uncharacterized protein2.7e-0631.19Show/hide
Query:  SIEMAEALAIREGIELAKSIGIHPVWVETDSLLVWKLVQGFDTYENETQNIIEDIKSYEISGEMEGLLLTSRESNQVANALAVHARRCCVDGVWMEEAPP
        S+++ EALA R  ++ A+ +G+H V  E DS  +   + G D  +     I++D K+  +S          R  N VA+ALA  A+ C    VW +  PP
Subjt:  SIEMAEALAIREGIELAKSIGIHPVWVETDSLLVWKLVQGFDTYENETQNIIEDIKSYEISGEMEGLLLTSRESNQVANALAVHARRCCVDGVWMEEAPP

Query:  WASQLVYQD
            L+  D
Subjt:  WASQLVYQD

A0A2N9J3G2 Fe2OG dioxygenase domain-containing protein3.5e-0635.78Show/hide
Query:  SIEMAEALAIREGIELAKSIGIHPVWVETDSLLVWKLVQGFDTYENETQNIIEDIKSYEISGEMEGLLLTSRESNQVANALAVHARRCCVDGVWMEEAPP
        ++EM EALA R  I  A+ +GI  V VE D+  + K +   D        +IED K+     +   L  T R  N VA+ALA  A  C    VW+EE PP
Subjt:  SIEMAEALAIREGIELAKSIGIHPVWVETDSLLVWKLVQGFDTYENETQNIIEDIKSYEISGEMEGLLLTSRESNQVANALAVHARRCCVDGVWMEEAPP

Query:  WASQLVYQD
          + ++  D
Subjt:  WASQLVYQD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCGATTGAAATGGCTGAAGCTTTAGCCATCCGGGAGGGGATCGAACTCGCAAAATCAATCGGTATTCATCCAGTTTGGGTGGAAACTGATTCGCTTCTAGTGTG
GAAGCTTGTTCAGGGATTCGATACCTATGAGAATGAAACCCAGAATATCATAGAAGACATCAAGTCCTACGAAATTTCAGGGGAGATGGAAGGGTTGTTACTAACCTCTA
GAGAATCAAACCAAGTTGCAAACGCCTTAGCTGTCCATGCTCGGAGATGCTGCGTCGATGGAGTCTGGATGGAAGAAGCCCCTCCATGGGCGAGTCAACTGGTCTATCAA
GACAGAAGAGAAGGAAGCCGGATAATGGGTTCCCATGGTAGCAGAAGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTTCGATTGAAATGGCTGAAGCTTTAGCCATCCGGGAGGGGATCGAACTCGCAAAATCAATCGGTATTCATCCAGTTTGGGTGGAAACTGATTCGCTTCTAGTGTG
GAAGCTTGTTCAGGGATTCGATACCTATGAGAATGAAACCCAGAATATCATAGAAGACATCAAGTCCTACGAAATTTCAGGGGAGATGGAAGGGTTGTTACTAACCTCTA
GAGAATCAAACCAAGTTGCAAACGCCTTAGCTGTCCATGCTCGGAGATGCTGCGTCGATGGAGTCTGGATGGAAGAAGCCCCTCCATGGGCGAGTCAACTGGTCTATCAA
GACAGAAGAGAAGGAAGCCGGATAATGGGTTCCCATGGTAGCAGAAGGTAG
Protein sequenceShow/hide protein sequence
MGSIEMAEALAIREGIELAKSIGIHPVWVETDSLLVWKLVQGFDTYENETQNIIEDIKSYEISGEMEGLLLTSRESNQVANALAVHARRCCVDGVWMEEAPPWASQLVYQ
DRREGSRIMGSHGSRR