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Lag0038557 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038557
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCACTA en-spm transposon protein
Genome locationchr2:20411553..20414292
RNA-Seq ExpressionLag0038557
SyntenyLag0038557
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF9588040.1 hypothetical protein IFM89_007215 [Coptis chinensis]4.2e-0549.21Show/hide
Query:  NRNNRSALSFNHRARSKSFLQIREDMTQMLALKDAPIPEGSKPISGEVIMEIVLGKRPDHVKG
        N+ +RS L  NH A  KSFL+IR DM +M+ L++  IPEGS P++ E I + VLG RP + +G
Subjt:  NRNNRSALSFNHRARSKSFLQIREDMTQMLALKDAPIPEGSKPISGEVIMEIVLGKRPDHVKG
KAF9602097.1 hypothetical protein IFM89_024864 [Coptis chinensis]7.9e-0437.35Show/hide
Query:  SESNRNNRSALSFNHRARSKSFLQIREDMTQMLALKDAPIPEGSKPISGEVIMEIVLGKRPDHVKGTPDLLGYVSNPMKSNQS
        S  N+ N +    +HR  SKSF   RE+  +ML +K  P+ EGS+P + + I E+VLGK+P + +G    LG+   P+ S+ +
Subjt:  SESNRNNRSALSFNHRARSKSFLQIREDMTQMLALKDAPIPEGSKPISGEVIMEIVLGKRPDHVKGTPDLLGYVSNPMKSNQS
TrEMBL top hitse value%identityAlignment
A0A5A7TG94 CACTA en-spm transposon protein5.0e-0439.36Show/hide
Query:  FNHRARSKSFLQIREDMT-----QMLALKDAPIPEGSKPISGEVIMEIVLGKRPDHVKGTPDLLGYVSNPMKSNQSSTRQLAIPSSVTGVHQYT
        +NH + SKSFLQ + ++T     QML L+  P PEGS+P+S + I + VLG+RP + KG    LG+   P      + R  +  SS T   Q T
Subjt:  FNHRARSKSFLQIREDMT-----QMLALKDAPIPEGSKPISGEVIMEIVLGKRPDHVKGTPDLLGYVSNPMKSNQSSTRQLAIPSSVTGVHQYT
A0A5A7TQV6 CACTA en-spm transposon protein8.5e-0434.51Show/hide
Query:  ETSESNRNNRSALSFNHRARSKSFLQ------------------IREDMTQMLALKDAPIPEGSKPISGEVIMEIVLGKRPDHVKGTPDLLGYVSNPMKS
        E S +N+  R    +NH + SKSFLQ                   RE   QML L+  P PEGS+P+S + I + VLG+R D+ KG    LG+   P   
Subjt:  ETSESNRNNRSALSFNHRARSKSFLQ------------------IREDMTQMLALKDAPIPEGSKPISGEVIMEIVLGKRPDHVKGTPDLLGYVSNPMKS

Query:  NQSSTRQLAIPSS
          +S   L+   S
Subjt:  NQSSTRQLAIPSS
A0A5D3C333 CACTA en-spm transposon protein5.0e-0439.36Show/hide
Query:  FNHRARSKSFLQIREDMT-----QMLALKDAPIPEGSKPISGEVIMEIVLGKRPDHVKGTPDLLGYVSNPMKSNQSSTRQLAIPSSVTGVHQYT
        +NH + SKSFLQ + ++T     QML L+  P PEGS+P+S + I + VLG+RP + KG    LG+   P      + R  +  SS T   Q T
Subjt:  FNHRARSKSFLQIREDMT-----QMLALKDAPIPEGSKPISGEVIMEIVLGKRPDHVKGTPDLLGYVSNPMKSNQSSTRQLAIPSSVTGVHQYT
A0A5D3CKE5 CACTA en-spm transposon protein5.0e-0437.07Show/hide
Query:  ETSESNRNNRSALSFNHRARSKSFL------------QIREDM-TQMLALKDAPIPEGSKPISGEVIMEIVLGKRPDHVKGTPDLLGYVSNPMKSNQSST
        E S +N+  R    +NH + SKSFL            Q+ ED   QML L+  PIPEGS+P+S + I + VLG+RP + KG    LG+   P      + 
Subjt:  ETSESNRNNRSALSFNHRARSKSFL------------QIREDM-TQMLALKDAPIPEGSKPISGEVIMEIVLGKRPDHVKGTPDLLGYVSNPMKSNQSST

Query:  RQLAIPSSVTGVHQYT
        R  +  SS T   Q T
Subjt:  RQLAIPSSVTGVHQYT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGGTCAAGACCAATTGCTCGACACTGCCGAAGAATATGATGATGAGGATTTGGGCCAGTTAGGCCAGACATCGTCCGCTGGAGAGACTTCAGAGTCCAATCGGAA
TAATCGGTCTGCTTTGTCATTTAATCATAGGGCTAGGTCAAAGTCTTTCCTTCAAATCCGAGAAGACATGACTCAAATGTTGGCGCTAAAAGATGCTCCTATTCCAGAAG
GGTCTAAACCAATCTCGGGGGAGGTGATAATGGAGATAGTGTTGGGCAAACGACCAGACCATGTTAAAGGAACTCCGGATCTTTTGGGATATGTTTCAAACCCAATGAAG
AGCAACCAATCAAGCACTAGGCAACTGGCTATCCCTAGCTCAGTCACTGGCGTTCACCAATACACAATGATCGTAGTGTGGATAATTGCCACACACTCTCTAAATCATCC
CTGA
mRNA sequenceShow/hide mRNA sequence
ATGACAGGTCAAGACCAATTGCTCGACACTGCCGAAGAATATGATGATGAGGATTTGGGCCAGTTAGGCCAGACATCGTCCGCTGGAGAGACTTCAGAGTCCAATCGGAA
TAATCGGTCTGCTTTGTCATTTAATCATAGGGCTAGGTCAAAGTCTTTCCTTCAAATCCGAGAAGACATGACTCAAATGTTGGCGCTAAAAGATGCTCCTATTCCAGAAG
GGTCTAAACCAATCTCGGGGGAGGTGATAATGGAGATAGTGTTGGGCAAACGACCAGACCATGTTAAAGGAACTCCGGATCTTTTGGGATATGTTTCAAACCCAATGAAG
AGCAACCAATCAAGCACTAGGCAACTGGCTATCCCTAGCTCAGTCACTGGCGTTCACCAATACACAATGATCGTAGTGTGGATAATTGCCACACACTCTCTAAATCATCC
CTGA
Protein sequenceShow/hide protein sequence
MTGQDQLLDTAEEYDDEDLGQLGQTSSAGETSESNRNNRSALSFNHRARSKSFLQIREDMTQMLALKDAPIPEGSKPISGEVIMEIVLGKRPDHVKGTPDLLGYVSNPMK
SNQSSTRQLAIPSSVTGVHQYTMIVVWIIATHSLNHP