; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0038566 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038566
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr2:20601163..20603453
RNA-Seq ExpressionLag0038566
SyntenyLag0038566
Gene Ontology termsNA
InterPro domainsIPR025558 - Domain of unknown function DUF4283
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO99000.1 reverse transcriptase [Corchorus capsularis]1.2e-2028.45Show/hide
Query:  VAVECTCQFLGFTTEEDRTRIVRQSPWHFDKYLLVLELPIRSQKPSDYQFSLSAFWIHVYDLPLDWYNNVMAERLGNAIGIYEEVDSRNDYHFWGASLRI
        +A+E       F +E D  R++  SPW FDK+LL+      +  P DY F+ + FWI +Y+LPL   N  +AE+LG  +G    VD   D   W   LR+
Subjt:  VAVECTCQFLGFTTEEDRTRIVRQSPWHFDKYLLVLELPIRSQKPSDYQFSLSAFWIHVYDLPLDWYNNVMAERLGNAIGIYEEVDSRNDYHFWGASLRI

Query:  LVRIDITHPLRRIIKINIDGSGVGSWIPLCYKKLPEFCAHCGIIEDPTVEDNMDYEVPNVSSVQPDMRLHQPPTLIQEPQRQQAVNLSLAHYSLSNDLML
         V ID+T PLRR I +     G      L Y++LP FC +CG+I    V D  D E  N+     +  +H    L   P + +                +
Subjt:  LVRIDITHPLRRIIKINIDGSGVGSWIPLCYKKLPEFCAHCGIIEDPTVEDNMDYEVPNVSSVQPDMRLHQPPTLIQEPQRQQAVNLSLAHYSLSNDLML

Query:  YGSTRENGGLDDIIARCNRCLSRQLLEIFNGANSRGESQTAADVSLLQNLSKKVEGDGSETVASQHPS--DCSLPANGVGDAKEKLKL-----------K
              NG L    ++     SR+ L I    +   +    A   L +++ K++    S  +A    S  D  +  NG   +K+KL L            
Subjt:  YGSTRENGGLDDIIARCNRCLSRQLLEIFNGANSRGESQTAADVSLLQNLSKKVEGDGSETVASQHPS--DCSLPANGVGDAKEKLKL-----------K

Query:  GVVSVNEGEEEAIGTTRAGVATVMHLKEGSNKGPKWKKRAR
         V  V+EG E    +   GV+     K        WK+RAR
Subjt:  GVVSVNEGEEEAIGTTRAGVATVMHLKEGSNKGPKWKKRAR

TXG59653.1 hypothetical protein EZV62_014226 [Acer yangbiense]2.4e-2132.07Show/hide
Query:  FTTEEDRTRIVRQSPWHFDKYLLVLELPIRSQKPSDYQFSLSAFWIHVYDLPLDWYNNVMAERLGNAIGIYEEVDSRNDYHFWGASLRILVRIDITHPLR
        F  E+DR R++  SPWHFD  LLVLE P+        +F+L+ FWI ++ +P+   +  +   LG  IG   EVD  N     G  +R+ VR++I  PL+
Subjt:  FTTEEDRTRIVRQSPWHFDKYLLVLELPIRSQKPSDYQFSLSAFWIHVYDLPLDWYNNVMAERLGNAIGIYEEVDSRNDYHFWGASLRILVRIDITHPLR

Query:  RIIKINIDGSGVGSWIPLCYKKLPEFCAHCGIIEDPTVEDNMDYEVPNVSSV-QPDMRL---HQPPTLIQEPQRQQAVNLSLAH
        R ++++I G G  S + L Y++L   C  CG+++    E  +D  +P ++ V QP+  +     PP  +   + ++ +  S+ H
Subjt:  RIIKINIDGSGVGSWIPLCYKKLPEFCAHCGIIEDPTVEDNMDYEVPNVSSV-QPDMRL---HQPPTLIQEPQRQQAVNLSLAH

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]2.8e-3044Show/hide
Query:  FTTEEDRTRIVRQSPWHFDKYLLVLELPIRSQKPSDYQFSLSAFWIHVYDLPLDWYNNVMAERLGNAIGIYEEVDSRNDYHFWGASLRILVRIDITHPLR
        F    DR RI+R  PW FD+ L++++ P+   KP D  F   + W+H +DL L   N  MA RLGNAIG++E+V+S  +   WG+ LR+ VR D+  PL 
Subjt:  FTTEEDRTRIVRQSPWHFDKYLLVLELPIRSQKPSDYQFSLSAFWIHVYDLPLDWYNNVMAERLGNAIGIYEEVDSRNDYHFWGASLRILVRIDITHPLR

Query:  RIIKINIDGSGVGSWIPLCYKKLPEFCAHCGIIEDPTVEDNMDYEVPNVS
        R IK+N+DG   G WIP+ Y++LP+F  HCG + D  ++D  D  V +VS
Subjt:  RIIKINIDGSGVGSWIPLCYKKLPEFCAHCGIIEDPTVEDNMDYEVPNVS

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]6.4e-3539.63Show/hide
Query:  MDPNSLVEDWARLSLTTTEKEITVVTD--------------------------------------RVAVECTCQFLG-------FTTEEDRTRIVRQSPW
        MD  +L+ DW +  LT+ E EI +  D                                      +V  + T + +G       F  E D  R+++  PW
Subjt:  MDPNSLVEDWARLSLTTTEKEITVVTD--------------------------------------RVAVECTCQFLG-------FTTEEDRTRIVRQSPW

Query:  HFDKYLLVLELPIRSQKPSDYQFSLSAFWIHVYDLPLDWYNNVMAERLGNAIGIYEEVDSRNDYHFWGASLRILVRIDITHPLRRIIKINIDGSGVGSWI
         FDK L+VL+ P  S+  S+ +F+  AFWIH++DLP+ W N  MA RLGNAIG + +VD       WGASLRI V IDIT PLRR IKINIDG   G WI
Subjt:  HFDKYLLVLELPIRSQKPSDYQFSLSAFWIHVYDLPLDWYNNVMAERLGNAIGIYEEVDSRNDYHFWGASLRILVRIDITHPLRRIIKINIDGSGVGSWI

Query:  PLCYKKLPEFCAHCGII
        P+ Y++LP+FC  CG+I
Subjt:  PLCYKKLPEFCAHCGII

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]1.4e-2643.18Show/hide
Query:  FTTEEDRTRIVRQSPWHFDKYLLVLELPIRSQKPSDYQFSLSAFWIHVYDLPLDWYNNVMAERLGNAIGIYEEVDSRNDYHFWGASLRILVRIDITHPLR
        F    DR +I +  PW FD+ L+++  P+    PS+  F+    W+  +DLPL      MA RLGNA+G +EE D  +    WG++LR+ V +DI+ PLR
Subjt:  FTTEEDRTRIVRQSPWHFDKYLLVLELPIRSQKPSDYQFSLSAFWIHVYDLPLDWYNNVMAERLGNAIGIYEEVDSRNDYHFWGASLRILVRIDITHPLR

Query:  RIIKINIDGSGVGSWIPLCYKKLPEFCAHCGI
        R IK+N+DG   G+WIP+ Y++LP+FC HCG+
Subjt:  RIIKINIDGSGVGSWIPLCYKKLPEFCAHCGI

TrEMBL top hitse value%identityAlignment
A0A1R3JW24 Reverse transcriptase5.7e-2128.45Show/hide
Query:  VAVECTCQFLGFTTEEDRTRIVRQSPWHFDKYLLVLELPIRSQKPSDYQFSLSAFWIHVYDLPLDWYNNVMAERLGNAIGIYEEVDSRNDYHFWGASLRI
        +A+E       F +E D  R++  SPW FDK+LL+      +  P DY F+ + FWI +Y+LPL   N  +AE+LG  +G    VD   D   W   LR+
Subjt:  VAVECTCQFLGFTTEEDRTRIVRQSPWHFDKYLLVLELPIRSQKPSDYQFSLSAFWIHVYDLPLDWYNNVMAERLGNAIGIYEEVDSRNDYHFWGASLRI

Query:  LVRIDITHPLRRIIKINIDGSGVGSWIPLCYKKLPEFCAHCGIIEDPTVEDNMDYEVPNVSSVQPDMRLHQPPTLIQEPQRQQAVNLSLAHYSLSNDLML
         V ID+T PLRR I +     G      L Y++LP FC +CG+I    V D  D E  N+     +  +H    L   P + +                +
Subjt:  LVRIDITHPLRRIIKINIDGSGVGSWIPLCYKKLPEFCAHCGIIEDPTVEDNMDYEVPNVSSVQPDMRLHQPPTLIQEPQRQQAVNLSLAHYSLSNDLML

Query:  YGSTRENGGLDDIIARCNRCLSRQLLEIFNGANSRGESQTAADVSLLQNLSKKVEGDGSETVASQHPS--DCSLPANGVGDAKEKLKL-----------K
              NG L    ++     SR+ L I    +   +    A   L +++ K++    S  +A    S  D  +  NG   +K+KL L            
Subjt:  YGSTRENGGLDDIIARCNRCLSRQLLEIFNGANSRGESQTAADVSLLQNLSKKVEGDGSETVASQHPS--DCSLPANGVGDAKEKLKL-----------K

Query:  GVVSVNEGEEEAIGTTRAGVATVMHLKEGSNKGPKWKKRAR
         V  V+EG E    +   GV+     K        WK+RAR
Subjt:  GVVSVNEGEEEAIGTTRAGVATVMHLKEGSNKGPKWKKRAR

A0A5C7HRG8 Uncharacterized protein1.1e-2132.07Show/hide
Query:  FTTEEDRTRIVRQSPWHFDKYLLVLELPIRSQKPSDYQFSLSAFWIHVYDLPLDWYNNVMAERLGNAIGIYEEVDSRNDYHFWGASLRILVRIDITHPLR
        F  E+DR R++  SPWHFD  LLVLE P+        +F+L+ FWI ++ +P+   +  +   LG  IG   EVD  N     G  +R+ VR++I  PL+
Subjt:  FTTEEDRTRIVRQSPWHFDKYLLVLELPIRSQKPSDYQFSLSAFWIHVYDLPLDWYNNVMAERLGNAIGIYEEVDSRNDYHFWGASLRILVRIDITHPLR

Query:  RIIKINIDGSGVGSWIPLCYKKLPEFCAHCGIIEDPTVEDNMDYEVPNVSSV-QPDMRL---HQPPTLIQEPQRQQAVNLSLAH
        R ++++I G G  S + L Y++L   C  CG+++    E  +D  +P ++ V QP+  +     PP  +   + ++ +  S+ H
Subjt:  RIIKINIDGSGVGSWIPLCYKKLPEFCAHCGIIEDPTVEDNMDYEVPNVSSV-QPDMRL---HQPPTLIQEPQRQQAVNLSLAH

A0A6J1BSZ1 uncharacterized protein LOC1110054811.4e-3044Show/hide
Query:  FTTEEDRTRIVRQSPWHFDKYLLVLELPIRSQKPSDYQFSLSAFWIHVYDLPLDWYNNVMAERLGNAIGIYEEVDSRNDYHFWGASLRILVRIDITHPLR
        F    DR RI+R  PW FD+ L++++ P+   KP D  F   + W+H +DL L   N  MA RLGNAIG++E+V+S  +   WG+ LR+ VR D+  PL 
Subjt:  FTTEEDRTRIVRQSPWHFDKYLLVLELPIRSQKPSDYQFSLSAFWIHVYDLPLDWYNNVMAERLGNAIGIYEEVDSRNDYHFWGASLRILVRIDITHPLR

Query:  RIIKINIDGSGVGSWIPLCYKKLPEFCAHCGIIEDPTVEDNMDYEVPNVS
        R IK+N+DG   G WIP+ Y++LP+F  HCG + D  ++D  D  V +VS
Subjt:  RIIKINIDGSGVGSWIPLCYKKLPEFCAHCGIIEDPTVEDNMDYEVPNVS

A0A6J1DU55 uncharacterized protein LOC1110231353.1e-3539.63Show/hide
Query:  MDPNSLVEDWARLSLTTTEKEITVVTD--------------------------------------RVAVECTCQFLG-------FTTEEDRTRIVRQSPW
        MD  +L+ DW +  LT+ E EI +  D                                      +V  + T + +G       F  E D  R+++  PW
Subjt:  MDPNSLVEDWARLSLTTTEKEITVVTD--------------------------------------RVAVECTCQFLG-------FTTEEDRTRIVRQSPW

Query:  HFDKYLLVLELPIRSQKPSDYQFSLSAFWIHVYDLPLDWYNNVMAERLGNAIGIYEEVDSRNDYHFWGASLRILVRIDITHPLRRIIKINIDGSGVGSWI
         FDK L+VL+ P  S+  S+ +F+  AFWIH++DLP+ W N  MA RLGNAIG + +VD       WGASLRI V IDIT PLRR IKINIDG   G WI
Subjt:  HFDKYLLVLELPIRSQKPSDYQFSLSAFWIHVYDLPLDWYNNVMAERLGNAIGIYEEVDSRNDYHFWGASLRILVRIDITHPLRRIIKINIDGSGVGSWI

Query:  PLCYKKLPEFCAHCGII
        P+ Y++LP+FC  CG+I
Subjt:  PLCYKKLPEFCAHCGII

A0A6J1DX30 uncharacterized protein LOC1110248747.0e-2743.18Show/hide
Query:  FTTEEDRTRIVRQSPWHFDKYLLVLELPIRSQKPSDYQFSLSAFWIHVYDLPLDWYNNVMAERLGNAIGIYEEVDSRNDYHFWGASLRILVRIDITHPLR
        F    DR +I +  PW FD+ L+++  P+    PS+  F+    W+  +DLPL      MA RLGNA+G +EE D  +    WG++LR+ V +DI+ PLR
Subjt:  FTTEEDRTRIVRQSPWHFDKYLLVLELPIRSQKPSDYQFSLSAFWIHVYDLPLDWYNNVMAERLGNAIGIYEEVDSRNDYHFWGASLRILVRIDITHPLR

Query:  RIIKINIDGSGVGSWIPLCYKKLPEFCAHCGI
        R IK+N+DG   G+WIP+ Y++LP+FC HCG+
Subjt:  RIIKINIDGSGVGSWIPLCYKKLPEFCAHCGI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATCGGTGCCTGGTGGCTTCCGACACCGAGAGCAAGACTGGGTAAGGAGAACTGTCGATTGTTGGTTATCAACCAGTGGAGTTTTAGTCACGAGTAATTGGAGGGA
GCGACGATCTACGATTAGTGGTCAGAGTAGAGGTGGGGCTGAGGGAGAGCCTGATGTCATCTCCCTTAATTCAGCGACTTTGACAGATCTTTCCATACATGAGCTATGCG
CCTTTATGGCAAGATCTGCTGTTTCAATCTCCGGCGATTTTGGCCAGAGCTCTTTTAGCCTTCGGGCTGCTATATCAGTGGAGGCTAGGGGGCTGAGATTCCCATCGATC
TTCGAGGCGTCTTCAGTTATCTTACTATATTGCTTCTATCCGTGTTGTGTGGTGCTTTTATCGAAAATCATGGATCCTAACTCTTTGGTTGAGGATTGGGCTAGACTTAG
CCTCACAACAACCGAAAAAGAAATCACAGTGGTTACGGACCGGGTTGCGGTGGAATGTACATGTCAATTCTTGGGGTTCACGACGGAAGAAGATAGGACGAGAATTGTGC
GACAGAGCCCCTGGCATTTTGATAAATATCTTTTGGTGTTAGAGCTCCCGATCAGGTCACAAAAGCCATCAGATTATCAATTCTCACTCTCGGCCTTCTGGATTCATGTG
TACGACCTTCCTTTGGATTGGTACAACAATGTCATGGCGGAACGGTTAGGAAATGCTATTGGTATTTATGAAGAAGTGGATAGCCGGAATGACTACCATTTTTGGGGAGC
AAGCCTTCGAATCTTGGTAAGGATTGACATCACTCATCCTCTTCGGCGCATAATCAAAATCAATATTGATGGGTCGGGGGTAGGAAGTTGGATTCCACTCTGTTACAAGA
AGTTGCCTGAATTCTGTGCCCATTGTGGAATTATTGAAGATCCGACGGTCGAGGATAATATGGATTACGAGGTTCCGAATGTTTCATCCGTACAGCCGGATATGAGGTTA
CATCAACCCCCAACTCTGATCCAAGAACCCCAACGACAACAAGCGGTCAATCTAAGTCTTGCTCACTACTCCTTATCCAATGATCTAATGTTATACGGATCCACGAGAGA
AAATGGGGGACTTGATGACATTATTGCTCGTTGTAACCGCTGCCTATCACGACAACTGCTGGAAATCTTCAATGGTGCAAATTCAAGGGGCGAATCTCAAACTGCTGCAG
ATGTCTCTTTGTTGCAGAATCTGTCTAAGAAGGTGGAAGGGGATGGGTCTGAGACGGTAGCAAGTCAACATCCGTCGGACTGTTCCTTGCCGGCGAATGGCGTTGGTGAT
GCTAAGGAAAAGCTGAAGCTCAAGGGCGTGGTAAGTGTCAATGAGGGTGAAGAAGAAGCAATTGGTACGACTCGAGCTGGGGTTGCCACAGTCATGCATTTGAAGGAAGG
AAGCAACAAGGGTCCTAAATGGAAGAAGCGGGCCCGGGCAGGTTATGTTCCTATTGGGCTTTCTGTGCGAGGGTTTGAGGAATTCCAAAAGAGGAAGGATGAACCAATAT
TACTATCTCCTGATAACATAAAGCGCCCAAAGATGGAAGAGGAGTCTGAGAAGGAGGCAGGGACTGTTGGACAACCCCGCCTGGATCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGACATCGGTGCCTGGTGGCTTCCGACACCGAGAGCAAGACTGGGTAAGGAGAACTGTCGATTGTTGGTTATCAACCAGTGGAGTTTTAGTCACGAGTAATTGGAGGGA
GCGACGATCTACGATTAGTGGTCAGAGTAGAGGTGGGGCTGAGGGAGAGCCTGATGTCATCTCCCTTAATTCAGCGACTTTGACAGATCTTTCCATACATGAGCTATGCG
CCTTTATGGCAAGATCTGCTGTTTCAATCTCCGGCGATTTTGGCCAGAGCTCTTTTAGCCTTCGGGCTGCTATATCAGTGGAGGCTAGGGGGCTGAGATTCCCATCGATC
TTCGAGGCGTCTTCAGTTATCTTACTATATTGCTTCTATCCGTGTTGTGTGGTGCTTTTATCGAAAATCATGGATCCTAACTCTTTGGTTGAGGATTGGGCTAGACTTAG
CCTCACAACAACCGAAAAAGAAATCACAGTGGTTACGGACCGGGTTGCGGTGGAATGTACATGTCAATTCTTGGGGTTCACGACGGAAGAAGATAGGACGAGAATTGTGC
GACAGAGCCCCTGGCATTTTGATAAATATCTTTTGGTGTTAGAGCTCCCGATCAGGTCACAAAAGCCATCAGATTATCAATTCTCACTCTCGGCCTTCTGGATTCATGTG
TACGACCTTCCTTTGGATTGGTACAACAATGTCATGGCGGAACGGTTAGGAAATGCTATTGGTATTTATGAAGAAGTGGATAGCCGGAATGACTACCATTTTTGGGGAGC
AAGCCTTCGAATCTTGGTAAGGATTGACATCACTCATCCTCTTCGGCGCATAATCAAAATCAATATTGATGGGTCGGGGGTAGGAAGTTGGATTCCACTCTGTTACAAGA
AGTTGCCTGAATTCTGTGCCCATTGTGGAATTATTGAAGATCCGACGGTCGAGGATAATATGGATTACGAGGTTCCGAATGTTTCATCCGTACAGCCGGATATGAGGTTA
CATCAACCCCCAACTCTGATCCAAGAACCCCAACGACAACAAGCGGTCAATCTAAGTCTTGCTCACTACTCCTTATCCAATGATCTAATGTTATACGGATCCACGAGAGA
AAATGGGGGACTTGATGACATTATTGCTCGTTGTAACCGCTGCCTATCACGACAACTGCTGGAAATCTTCAATGGTGCAAATTCAAGGGGCGAATCTCAAACTGCTGCAG
ATGTCTCTTTGTTGCAGAATCTGTCTAAGAAGGTGGAAGGGGATGGGTCTGAGACGGTAGCAAGTCAACATCCGTCGGACTGTTCCTTGCCGGCGAATGGCGTTGGTGAT
GCTAAGGAAAAGCTGAAGCTCAAGGGCGTGGTAAGTGTCAATGAGGGTGAAGAAGAAGCAATTGGTACGACTCGAGCTGGGGTTGCCACAGTCATGCATTTGAAGGAAGG
AAGCAACAAGGGTCCTAAATGGAAGAAGCGGGCCCGGGCAGGTTATGTTCCTATTGGGCTTTCTGTGCGAGGGTTTGAGGAATTCCAAAAGAGGAAGGATGAACCAATAT
TACTATCTCCTGATAACATAAAGCGCCCAAAGATGGAAGAGGAGTCTGAGAAGGAGGCAGGGACTGTTGGACAACCCCGCCTGGATCCATGA
Protein sequenceShow/hide protein sequence
MTSVPGGFRHREQDWVRRTVDCWLSTSGVLVTSNWRERRSTISGQSRGGAEGEPDVISLNSATLTDLSIHELCAFMARSAVSISGDFGQSSFSLRAAISVEARGLRFPSI
FEASSVILLYCFYPCCVVLLSKIMDPNSLVEDWARLSLTTTEKEITVVTDRVAVECTCQFLGFTTEEDRTRIVRQSPWHFDKYLLVLELPIRSQKPSDYQFSLSAFWIHV
YDLPLDWYNNVMAERLGNAIGIYEEVDSRNDYHFWGASLRILVRIDITHPLRRIIKINIDGSGVGSWIPLCYKKLPEFCAHCGIIEDPTVEDNMDYEVPNVSSVQPDMRL
HQPPTLIQEPQRQQAVNLSLAHYSLSNDLMLYGSTRENGGLDDIIARCNRCLSRQLLEIFNGANSRGESQTAADVSLLQNLSKKVEGDGSETVASQHPSDCSLPANGVGD
AKEKLKLKGVVSVNEGEEEAIGTTRAGVATVMHLKEGSNKGPKWKKRARAGYVPIGLSVRGFEEFQKRKDEPILLSPDNIKRPKMEEESEKEAGTVGQPRLDP