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Lag0038607 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038607
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr2:21311372..21311854
RNA-Seq ExpressionLag0038607
SyntenyLag0038607
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAY61101.1 hypothetical protein CUMW_207140, partial [Citrus unshiu]3.4e-0827.86Show/hide
Query:  TDAAVNPLAGGSGYGAVIFGGDSQICGAMEFFDQTRHTPLAAEVNALIHGLRLLQRMQYTRARVFSDSVSLIKMINGNSDISTDMFHWILQIQEMRDSFE
        TDAA N     +G GAVI   + Q+        +   +   AE  A+  GL++ +        + SDS  ++ ++N      ++++  +L+IQ++++SF+
Subjt:  TDAAVNPLAGGSGYGAVIFGGDSQICGAMEFFDQTRHTPLAAEVNALIHGLRLLQRMQYTRARVFSDSVSLIKMINGNSDISTDMFHWILQIQEMRDSFE

Query:  VISFHYVSRHCNGKADYLAKHALSSGSSMLWLGNFPQELV
         +S  Y  R CN  A  LAK AL    +++W G++P +++
Subjt:  VISFHYVSRHCNGKADYLAKHALSSGSSMLWLGNFPQELV

XP_015384866.1 uncharacterized protein LOC107176592 [Citrus sinensis]5.2e-0934.04Show/hide
Query:  DAAVNPLAGGSGYGAVIFGGDSQICGAMEFFDQTRHTPLAAEVNALIHGLRLLQRMQYTRARVFSDSVSLIKMINGNSDISTDMFHWILQIQEMRDSFEV
        DAA+N   G +G GAVI   +S+I  A     +       AE  A+  GL + +    +   V +D   + K+IN      T++   I +IQ+ R  F+ 
Subjt:  DAAVNPLAGGSGYGAVIFGGDSQICGAMEFFDQTRHTPLAAEVNALIHGLRLLQRMQYTRARVFSDSVSLIKMINGNSDISTDMFHWILQIQEMRDSFEV

Query:  ISFHYVSRHCNGKADYLAKHALSSGSSMLWLGNFPQELVSM
        ISFHY  R CN  A  LAK AL S S+++W    P ++ S+
Subjt:  ISFHYVSRHCNGKADYLAKHALSSGSSMLWLGNFPQELVSM

XP_024047996.1 uncharacterized protein LOC112101553 [Citrus clementina]5.2e-0934.04Show/hide
Query:  DAAVNPLAGGSGYGAVIFGGDSQICGAMEFFDQTRHTPLAAEVNALIHGLRLLQRMQYTRARVFSDSVSLIKMINGNSDISTDMFHWILQIQEMRDSFEV
        DAA+N   G +G GAVI   +S+I  A     +       AE  A+  GL + +    +   V +D   + K+IN      T++   I +IQ+ R  F+ 
Subjt:  DAAVNPLAGGSGYGAVIFGGDSQICGAMEFFDQTRHTPLAAEVNALIHGLRLLQRMQYTRARVFSDSVSLIKMINGNSDISTDMFHWILQIQEMRDSFEV

Query:  ISFHYVSRHCNGKADYLAKHALSSGSSMLWLGNFPQELVSM
        ISFHY  R CN  A  LAK AL S S+++W    P ++ S+
Subjt:  ISFHYVSRHCNGKADYLAKHALSSGSSMLWLGNFPQELVSM

XP_024956542.1 uncharacterized protein LOC112498908 [Citrus sinensis]2.6e-0827.59Show/hide
Query:  TDAAVNPLAGGSGYGAVIFGGDSQICGAMEFFDQTRHTPLAAEVNALIHGLRLLQRMQYTRARVFSDSVSLIKMINGNSDISTDMFHWILQIQEMRDSFE
        TDAA N     +G GAVI   + Q+        +   +   AE  A+  GL++ +        + SDS  ++ ++N      ++++  +L+IQ++++SF+
Subjt:  TDAAVNPLAGGSGYGAVIFGGDSQICGAMEFFDQTRHTPLAAEVNALIHGLRLLQRMQYTRARVFSDSVSLIKMINGNSDISTDMFHWILQIQEMRDSFE

Query:  VISFHYVSRHCNGKADYLAKHALSSGSSMLWLGNFPQELVSMSNS
         +S  Y  R CN  A  L K AL    +++W G++P +++  S+S
Subjt:  VISFHYVSRHCNGKADYLAKHALSSGSSMLWLGNFPQELVSMSNS

XP_030483444.1 uncharacterized protein LOC115700033 [Cannabis sativa]5.2e-0932.39Show/hide
Query:  MFTDAAVNPLAGGSGYGAVIFGGDSQICGAMEFFDQTRHTPLAAEVNALIHGLRLLQRMQYTRARVFSDSVSLIKMINGNSDISTDMFHWILQIQEMRDS
        ++ DAA++      G+GA+IF  D Q+  A+    Q   +   AE  AL+ GL   Q +     RVFSDS+SL+  + G +    ++      I+ +  S
Subjt:  MFTDAAVNPLAGGSGYGAVIFGGDSQICGAMEFFDQTRHTPLAAEVNALIHGLRLLQRMQYTRARVFSDSVSLIKMINGNSDISTDMFHWILQIQEMRDS

Query:  FEVISFHYVSRHCNGKADYLAKHALSSGSSMLWLGNFPQELV
        F  +S  +VSR+ N +A  LAKHAL   + + W+   P   V
Subjt:  FEVISFHYVSRHCNGKADYLAKHALSSGSSMLWLGNFPQELV

TrEMBL top hitse value%identityAlignment
A0A2H5Q972 Uncharacterized protein (Fragment)1.6e-0827.86Show/hide
Query:  TDAAVNPLAGGSGYGAVIFGGDSQICGAMEFFDQTRHTPLAAEVNALIHGLRLLQRMQYTRARVFSDSVSLIKMINGNSDISTDMFHWILQIQEMRDSFE
        TDAA N     +G GAVI   + Q+        +   +   AE  A+  GL++ +        + SDS  ++ ++N      ++++  +L+IQ++++SF+
Subjt:  TDAAVNPLAGGSGYGAVIFGGDSQICGAMEFFDQTRHTPLAAEVNALIHGLRLLQRMQYTRARVFSDSVSLIKMINGNSDISTDMFHWILQIQEMRDSFE

Query:  VISFHYVSRHCNGKADYLAKHALSSGSSMLWLGNFPQELV
         +S  Y  R CN  A  LAK AL    +++W G++P +++
Subjt:  VISFHYVSRHCNGKADYLAKHALSSGSSMLWLGNFPQELV

A0A6J1DX30 uncharacterized protein LOC1110248741.6e-0830.77Show/hide
Query:  TDAAVNPLAGGSGYGAVIFGGDSQICGAMEFFDQTRHTPLAAEVNALIHGLRLLQRMQYTRARVFSDSVSLIKMINGNSDISTDMFHWILQIQEMRDSFE
        TDAA       + +G +I      +  A         +PL AE+  ++ GL+      +T   V SDS+  I++I        D  +W+++IQ +   F 
Subjt:  TDAAVNPLAGGSGYGAVIFGGDSQICGAMEFFDQTRHTPLAAEVNALIHGLRLLQRMQYTRARVFSDSVSLIKMINGNSDISTDMFHWILQIQEMRDSFE

Query:  VISFHYVSRHCNGKADYLAKHALSSGS-SMLWLGNFPQELVSM
         ISF + SR CN  A  LAK  ++S S +  WL NFP  L+ +
Subjt:  VISFHYVSRHCNGKADYLAKHALSSGS-SMLWLGNFPQELVSM

A0A7J6GCK1 Uncharacterized protein (Fragment)4.7e-0833.82Show/hide
Query:  TDAAVNPLAGGSGYGAVIFGGDSQICGAMEFFDQTRHTPLAAEVNALIHGLRLLQRMQYTRARVFSDSVSLIKMINGNSDISTDMFHWILQIQEMRDSFE
        TDA++     G G  AVI      +  A   F     + L AE NA+  G++L  R   T A+V SDS SLIK +N ++   TD  H +  I+ +R+ F+
Subjt:  TDAAVNPLAGGSGYGAVIFGGDSQICGAMEFFDQTRHTPLAAEVNALIHGLRLLQRMQYTRARVFSDSVSLIKMINGNSDISTDMFHWILQIQEMRDSFE

Query:  VISFHYVSRHCNGKADYLAKHALSSGSSMLWLGNFP
         + F + +R CN  A+ LAK +  +  S +W    P
Subjt:  VISFHYVSRHCNGKADYLAKHALSSGSSMLWLGNFP

A0A7J6HCI0 Uncharacterized protein4.7e-0833.82Show/hide
Query:  TDAAVNPLAGGSGYGAVIFGGDSQICGAMEFFDQTRHTPLAAEVNALIHGLRLLQRMQYTRARVFSDSVSLIKMINGNSDISTDMFHWILQIQEMRDSFE
        TDA++     G G  AVI      +  A   F     + L AE NA+  G++L  R   T A+V SDS SLIK +N ++   TD  H +  I+ +R+ F+
Subjt:  TDAAVNPLAGGSGYGAVIFGGDSQICGAMEFFDQTRHTPLAAEVNALIHGLRLLQRMQYTRARVFSDSVSLIKMINGNSDISTDMFHWILQIQEMRDSFE

Query:  VISFHYVSRHCNGKADYLAKHALSSGSSMLWLGNFP
         + F + +R CN  A+ LAK +  +  S +W    P
Subjt:  VISFHYVSRHCNGKADYLAKHALSSGSSMLWLGNFP

A0A803PAK3 Uncharacterized protein3.6e-0831.91Show/hide
Query:  TDAAVNPLAGGSGYGAVIFGGDSQICGAMEFFDQTRHTPLAAEVNALIHGLRLLQRMQYTRARVFSDSVSLIKMINGNSDISTDMFHWIL-QIQEMRDSF
        TDAA+N +   SG+GAV+     QI  AM        TP   E  AL+H L+ ++ +Q     + ++S+S++K ++ + ++ +D FH +L  I  +  +F
Subjt:  TDAAVNPLAGGSGYGAVIFGGDSQICGAMEFFDQTRHTPLAAEVNALIHGLRLLQRMQYTRARVFSDSVSLIKMINGNSDISTDMFHWIL-QIQEMRDSF

Query:  EVISFHYVSRHCNGKADYLAKHALSSGSSMLWLGNFPQELV
              +V R  N  A  LA++ALS  S+  W+G  P  L+
Subjt:  EVISFHYVSRHCNGKADYLAKHALSSGSSMLWLGNFPQELV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G04625.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.8e-0427.84Show/hide
Query:  GAMEFFDQTRHTPLAAEVNALIHGLRLLQRMQYTRARVFSDSVSLIKMINGNSDISTDMFHWILQIQEMRDSFEVISFHYVSRHCNGKADYLAKHAL
        GA          P+ +E+ AL+  ++      Y +     D+  + +++NG S  +  +F+WI  I   R  FE   F +  R  N  AD LAK  L
Subjt:  GAMEFFDQTRHTPLAAEVNALIHGLRLLQRMQYTRARVFSDSVSLIKMINGNSDISTDMFHWILQIQEMRDSFEVISFHYVSRHCNGKADYLAKHAL

AT1G10000.1 Ribonuclease H-like superfamily protein2.2e-0533.33Show/hide
Query:  TPLAAEV----NALIHGLRLLQRMQYTRARVFSDSVSLIKMINGNSDISTDMFHWILQIQEMRDSFEVISFHYVSRHCNGKADYLAKHAL
        +PLAAE     +A++H L+L    + +   V SDS S++  +N N  ++ ++F  +++I+ +R+ F  ISF ++ R  N  AD  AK +L
Subjt:  TPLAAEV----NALIHGLRLLQRMQYTRARVFSDSVSLIKMINGNSDISTDMFHWILQIQEMRDSFEVISFHYVSRHCNGKADYLAKHAL

AT1G27870.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein6.3e-0533.67Show/hide
Query:  LAAEVNALIHGLRLLQRMQYTRARVFSDSVSLIKMINGNSDISTDMFHWILQIQEMRDSFEVISFHYVSRHCNGKADYLAKHALSSGSSML---WLGN
        L +E+ ALI  ++      Y R     D+  L  +ING S +   + +WI  I      FE I F+++ RH N  AD LAK  L + S  L   W+ N
Subjt:  LAAEVNALIHGLRLLQRMQYTRARVFSDSVSLIKMINGNSDISTDMFHWILQIQEMRDSFEVISFHYVSRHCNGKADYLAKHALSSGSSML---WLGN

AT1G77815.1 BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT1G27870.1)5.4e-0435.44Show/hide
Query:  YTRARVFSDSVSLIKMINGNSDISTDMFHWILQIQEMRDSFEVISFHYVSRHCNGKADYLAKHALSSGS---SMLWLGN
        Y R     D+  L  +ING S +   + +WI  I      FE I F+++ RH N  AD LAK  L + S   + LW+ N
Subjt:  YTRARVFSDSVSLIKMINGNSDISTDMFHWILQIQEMRDSFEVISFHYVSRHCNGKADYLAKHALSSGS---SMLWLGN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCACGGACGCTGCAGTAAATCCATTGGCAGGAGGATCTGGTTATGGGGCTGTTATTTTCGGAGGGGACAGTCAAATTTGCGGTGCCATGGAATTTTTTGACCAAAC
ACGACATACACCTCTAGCAGCGGAAGTTAATGCATTGATTCATGGGTTACGACTACTTCAACGGATGCAATATACACGTGCTCGTGTTTTTTCAGATTCAGTATCGCTGA
TCAAAATGATTAATGGGAACTCAGACATTTCTACCGACATGTTTCATTGGATATTGCAAATCCAAGAGATGCGTGATTCCTTTGAGGTCATATCTTTCCATTATGTATCT
AGACATTGTAATGGGAAAGCTGATTATCTGGCGAAACATGCTCTATCTTCGGGTAGCTCTATGCTTTGGTTAGGAAATTTTCCTCAAGAGCTAGTATCAATGAGTAATTC
GACTCATTGCAAATGTAATGTTTCGTGTATTTTTCTAAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTCACGGACGCTGCAGTAAATCCATTGGCAGGAGGATCTGGTTATGGGGCTGTTATTTTCGGAGGGGACAGTCAAATTTGCGGTGCCATGGAATTTTTTGACCAAAC
ACGACATACACCTCTAGCAGCGGAAGTTAATGCATTGATTCATGGGTTACGACTACTTCAACGGATGCAATATACACGTGCTCGTGTTTTTTCAGATTCAGTATCGCTGA
TCAAAATGATTAATGGGAACTCAGACATTTCTACCGACATGTTTCATTGGATATTGCAAATCCAAGAGATGCGTGATTCCTTTGAGGTCATATCTTTCCATTATGTATCT
AGACATTGTAATGGGAAAGCTGATTATCTGGCGAAACATGCTCTATCTTCGGGTAGCTCTATGCTTTGGTTAGGAAATTTTCCTCAAGAGCTAGTATCAATGAGTAATTC
GACTCATTGCAAATGTAATGTTTCGTGTATTTTTCTAAAGTAA
Protein sequenceShow/hide protein sequence
MFTDAAVNPLAGGSGYGAVIFGGDSQICGAMEFFDQTRHTPLAAEVNALIHGLRLLQRMQYTRARVFSDSVSLIKMINGNSDISTDMFHWILQIQEMRDSFEVISFHYVS
RHCNGKADYLAKHALSSGSSMLWLGNFPQELVSMSNSTHCKCNVSCIFLK